LOCUS       XM_006255825            5959 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuropilin 1 (Nrp1), transcript
            variant X1, mRNA.
ACCESSION   XM_006255825
VERSION     XM_006255825.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006255825.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006255825.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5959
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5959
                     /gene="Nrp1"
                     /gene_synonym="Nrp"
                     /note="neuropilin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 82 ESTs, 2 long
                     SRA reads, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 84 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:246331"
                     /db_xref="RGD:621588"
     CDS             606..3374
                     /gene="Nrp1"
                     /gene_synonym="Nrp"
                     /codon_start=1
                     /product="neuropilin-1 isoform X1"
                     /protein_id="XP_006255887.1"
                     /db_xref="GeneID:246331"
                     /db_xref="RGD:621588"
                     /translation="MERGLPLLCATLALALALAGAFRSDKCGGTIKIENPGYLTSPGY
                     PHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRDCKYDYVEVIDGENEGGRLWGK
                     FCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTAPTGVIKS
                     PGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGVFCRYDRLEIWDGFP
                     EVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSISEDFKCM
                     EALGMESGEIHSDQITASSQYGTNWSVERSRLNYPENGWTPGEDSYREWIQVDLGLLR
                     FVTAVGTQGAISKETKKKYYVKTYRVDISSNGEDWITLKEGNKAIIFQGNTNPTDVVF
                     GVFPKPLITRFVRIKPASWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITAS
                     NQGDRNWMPENIRLVTSRTGWALPPSPHPYINEWLQVDLGDEKIVRGVIIQGGKHREN
                     KVFMRKFKIAYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRAFTPLSTRFIRIYP
                     ERATHSGLGLRMELLGCEVEVPTAGPTTPNGNPVDECDDDQANCHSGTGDDFQLTGGT
                     TVLATEKPTIIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDSHAQLRWRVLTSKTGP
                     IQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQSSAHCMTFWYHMSGSHVGTLRVKL
                     HYQKPEEYDQLVWMVVGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDI
                     SINNHIPQEDCAKPTDLDKKNTEIKIDETGSTPGYEEGKGDKNISRKPGNVLKTLDPI
                     LITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLN
                     PQSNYSEA"
ORIGIN      
        1 gacgcgtgat ccacaccacc tggggcgcgg gtgactaggg atttggagtt ccttgaagta
       61 gcagctaacc ccgggctctc agaactcctg ggctccggga tcctcagcct agctcagtcc
      121 tggggtgcag agatctcgcc aagacaaccc ggacctcctc tgggcgccag ctcctcggct
      181 ccaacccgtc cagaatcaag cgggattttt tttttctttc cctctagaaa ttggctttgg
      241 tgtgtcgccc gccctctccc ctcctcctcg caactcctcc cctctttttt tcctccttct
      301 tcttcttcct gagacatggc ccgggcagtg gctcctggaa gaggaacaag tgtgggaaaa
      361 gggagaggaa atcggagcta aatgacagga tgcaggcgac ttgagacaca aaaagagacg
      421 cgcttctcgc gaattcaggc attgcctcgc cgctagcctt ccccgccaag accggctgag
      481 gattttatgg ttcttaagcg gacttaagag cgttgtttcg gattgttaag attcccgttt
      541 gctgggtttt cctccctcaa tcgtgctctc ccgcggctgc ctggggactg gctcggcgaa
      601 ggaggatgga gagggggctg ccgttgctgt gcgccacgct cgcccttgcc ctcgccctgg
      661 cgggcgcttt ccgcagcgat aaatgtggcg ggactataaa aattgaaaac ccggggtacc
      721 ttacatctcc cggctaccct cattcttacc atccaagtga gaaatgtgaa tggctaatcc
      781 aagctccgga gccctaccag agaatcatga tcaacttcaa cccacatttc gatttggagg
      841 acagagactg caagtatgac tatgtggaag tgatcgatgg agagaatgaa ggtggccgcc
      901 tgtgggggaa gttctgtggg aagatcgcac cttcacctgt ggtgtcttca gggccatttc
      961 tcttcatcaa atttgtctct gactatgaga cccacggggc aggattttcc atccgctatg
     1021 aaatcttcaa gagagggccc gaatgttctc agaactatac agcacctact ggagtgataa
     1081 agtcccctgg gttccctgaa aaatacccca acagcttgga gtgcacctac atcatctttg
     1141 caccaaagat gtctgagata atcctagagt ttgaaagttt tgacctggag caagactcaa
     1201 atcctcccgg aggagtgttc tgtcgctatg accggctgga gatctgggat ggattccctg
     1261 aagttggccc tcacattggg cgttactgtg ggcagaaaac tcctggccgg atccgctcct
     1321 cttcaggcat tctatccatg gtcttctaca ctgacagcgc aatagcaaag gaaggtttct
     1381 cagccaacta cagcgtgctg cagagcagca tctctgaaga tttcaagtgt atggaggctc
     1441 tgggcatgga atctggagag atccattctg accagatcac tgcatcttcc cagtatggta
     1501 ccaactggtc tgttgagcgc tcccgcctga actaccctga aaacgggtgg acaccaggag
     1561 aggactccta cagggagtgg atccaggtgg acttgggcct cctgcgattc gttactgctg
     1621 tggggacaca gggtgccatt tccaaggaaa ccaagaagaa atattatgtc aagacttaca
     1681 gagtagacat cagctccaac ggagaggact ggatcaccct gaaggaggga aataaagcca
     1741 ttatctttca gggaaacacc aatcccacgg atgttgtctt tggagttttc cccaaaccac
     1801 tgataactcg atttgtccga atcaaacctg catcctggga aactggaata tctatgagat
     1861 ttgaagttta tggctgcaag ataacagatt acccttgctc tggaatgttg ggcatggtgt
     1921 ctggacttat ttcagactcc cagattacag catccaacca aggagacagg aactggatgc
     1981 cagaaaacat ccgcctggtg accagtcgaa ccggctgggc cctgccaccc tcaccccacc
     2041 catacatcaa tgaatggctc caagtggacc tgggagatga gaagatagta agaggtgtca
     2101 tcattcaagg tgggaagcac cgagaaaaca aagtgttcat gaggaagttc aagatcgcct
     2161 acagtaacaa tggttctgac tggaaaatga tcatggatga cagcaagcgc aaggctaagt
     2221 cttttgaagg caacaacaac tatgacacac ctgagctccg ggcctttaca cctctctcca
     2281 caagattcat caggatctac cccgagagag ccacacatag tgggctcgga ctgaggatgg
     2341 agctactggg ctgtgaagta gaagtgccta cagctggacc cacgacaccc aatgggaacc
     2401 ccgtggacga gtgtgacgat gaccaggcca actgccacag tggcacaggt gatgacttcc
     2461 agctcacagg aggcaccact gtcctggcca cagagaagcc aaccattata gacagcacca
     2521 tccaatcaga gttcccgaca tacggtttta actgcgagtt tggctggggc tctcacaaga
     2581 cattctgcca ctgggaacat gacagccacg cgcagctcag gtggagggtg ctgaccagca
     2641 agacggggcc cattcaggac cacacaggag atggcaactt catctattcc caagctgatg
     2701 aaaatcagaa aggcaaagta gcccgcctgg tgagccctgt ggtctattcc cagagttctg
     2761 cccactgcat gaccttctgg tatcacatgt ccggctctca tgtgggtaca ctgagggtca
     2821 aactgcacta ccagaagcca gaggaatatg atcaactggt ctggatggtg gtcgggcacc
     2881 aaggagacca ctggaaggaa gggcgtgtct tgctgcacaa atctctgaaa ctgtatcagg
     2941 ttatttttga aggtgaaatc ggaaaaggaa acctcggtgg gattgctgtg gatgatatca
     3001 gtattaacaa ccacattcct caggaggact gtgcaaaacc aacagaccta gataaaaaga
     3061 acacagaaat taaaatagat gaaacaggga gcaccccagg atatgaagaa gggaaaggcg
     3121 acaagaacat ctccaggaag ccaggcaatg tgcttaagac cctggacccc atcctgatca
     3181 ccatcatagc catgagtgcc ctgggggtgc tcctgggtgc agtctgtgga gttgtgctgt
     3241 actgtgcctg ttggcacaat gggatgtcgg aaaggaacct atctgccctg gagaactata
     3301 actttgaact tgtggatggt gtaaagttga aaaaagataa actgaaccca cagagtaatt
     3361 actcagaggc gtgaaggcac ggagctggag ggaacaaggg aggagcgcgg caggagaaca
     3421 gtggaggcgc agggactctg ttactctgct ttcactgtaa gctgggaagg gcggggactc
     3481 tgttactccg ctttcactgt aagctcggaa gggcatccgc gatgccatgc caggcttttc
     3541 tcaggagctt caatgagcat cacctacaga cacaagcagg tgactgcggt aacaacagga
     3601 atcatgtaca gcctgctttc ttctcttggt ttcgtttggg taatcagaag ccagttgaga
     3661 ccaagtgtga ctgacttcat ggttcatcct acttggcccc ctttttcctc tctttctcct
     3721 taccctgtgg tggattcttc tcggaaactg caaaatccaa gatgctggca ctaggcgttg
     3781 ttcagtgggc tctttcgatg gacatgtgac ctatagccca gtgcctagag catattagca
     3841 taaccacatt tcaggggaca ccaatgtccg cttttgcatc gctacgtgca gcgagcacag
     3901 gaaaaagaaa aaagaaagaa agaaaaagaa ttagactatt ttgtttgcaa agtactgtgg
     3961 cctcagtacc catctagcgt gtcagctctg tttaccaagc aataccgaca gatttttctt
     4021 gatgttttcc agtgttgtac tgaatctcgt gtttgtgacc tccattcaga gataccatac
     4081 cctgcagcca ccaaactgct agcacccggg tgtcccgctg atgaccacca caaaagtctt
     4141 cggcactggc tagtcttcgt cctctcaagt gcctttttgt ttgtgtactg gttccttgtg
     4201 tcccgtggat gacccactct gtttctggtg aaaacccttc tcttcaatca gacctggtgg
     4261 cccactgact aagaagaaag tatattttag tgtgctatgc caaccccggg aaggcaaggg
     4321 ctctgaagac ctggcaatgt ggcttaatca ttctgatttt ttccgaagtt caatgtcaat
     4381 gtctcttgac cctttgtata aagctgcaat gttctctctc gttctttcct atgggatgta
     4441 ttttcagata caaactctca gttctttctt tccttcttct ctcctttttg cctctggaaa
     4501 gcgaagcatt tgccactgtc cagaatgaac cttgcagctt taacctgctg gcgatggcaa
     4561 acaattttac tagactttat gttttaagat aattaaataa ggggaattcc taactttgtc
     4621 ctccagagtc taactttggg tttcttgtta actggttaaa gtgacagtat cttttttcct
     4681 taagccacat gcttatacat tctgattaga ctgatgtctg atataaatgt ctgcatctaa
     4741 tggaaatcat aagttgaaag agaaaagagt accaactggc tttcagatga gacccgcagg
     4801 aagcactgta taaaatcccc aagtctaaaa ggatgtgaaa actttacatc caaatatgca
     4861 aaatgagccc tgaaaaacct tcttgttttg ttattaggtc agaggaggat aatgaaaaga
     4921 atagctcatt taagaaataa acaattatca tgatgcctga ggcaaaacaa ttttaagacc
     4981 agtcacaagg ggtacataaa accaaacaaa tgtttagaac aatccattca gcagaaaccc
     5041 tgagaaaaat aaattttaat gaatgcttct agaaacatcc aatggctcat aaagaaaaaa
     5101 gcctacctta ggactggcaa gatattggcc tcgacagcac agagaggtaa tatcttaacc
     5161 caaagcagct tccggctggt gaatttctgt cttgatgggc tgtccataag aactcccagc
     5221 tctttccctt cctagtgtgg ctgcaggtct ccctcagtta catttcttag agatcacatt
     5281 tgcttactgg acaaatggtt tttgttcacg ctggtttagt gagatttgag aatgtctttt
     5341 tttccaggga agtattgatc actaaaataa aggatatgtt tttattccca gaggcatcaa
     5401 attcacttgt tataatcatt ctggggggaa aagcattaag taagactttg tttctaaggc
     5461 aacaaacttg accagtgtcc tcagccaagg aaaaaatgat actgcaactt taaattttaa
     5521 agtaccttgc actgataaat atatttaaaa gttatatgtt tataaagtta ttaatttgta
     5581 aaggcagtgt tacaaaatgt tcagtttata ttgttttaga ttgtttcgta atttttaaag
     5641 gtgtaaaata acgtattttt tctttattga aatctataag actttccgta gtaagatgtc
     5701 tcgttttttc tggtatatta ttgcttcatg ttttgtaccc tcataaaatt ttgtgcaaat
     5761 tttttttaca gaaattttta ttttctatga tgatatgtat gacacttgta aattgtttca
     5821 aaatgaacag cgaagcctta acttgaaatt tgtattctct gagtagcata aaaaccacct
     5881 agaatgaact gtaacttaag ctcgaaacta cacattccaa agaagcagtt gaattaaaca
     5941 ttttcataaa aatcccaaa
//
