LOCUS       XM_039088449            7861 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor interacting protein 1
            (Nrip1), transcript variant X4, mRNA.
ACCESSION   XM_039088449
VERSION     XM_039088449.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088449.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7861
                     /gene="Nrip1"
                     /gene_synonym="RIP140"
                     /note="nuclear receptor interacting protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 17 ESTs, 1 long SRA read, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 140 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304157"
                     /db_xref="RGD:1311850"
     CDS             658..4146
                     /gene="Nrip1"
                     /gene_synonym="RIP140"
                     /codon_start=1
                     /product="nuclear receptor-interacting protein 1 isoform
                     X1"
                     /protein_id="XP_038944377.1"
                     /db_xref="GeneID:304157"
                     /db_xref="RGD:1311850"
                     /translation="MTHGEELGSDVHPDSIVLTYLEGLLMHQAAGGSGTAVDKKSAGH
                     SEEDQNFNLSGSAFPTCQSNGPTLSTQTYQGSGMLHLKKARLLQSSEDWNAAQRKRLS
                     DSIVNLNVKKEALLVGMVDSVPKGKQDSTVLASLLQSFSSRLQTVALSQQIRQSLKEQ
                     GYALSHESLKVEKDLRCYGVASSHLKTLLKKSKTKDQKSGTTLPDVTPNLIRDSFVES
                     SPHHVGQSGTKVMSEPLSCAARLQAVASMVEKRASPAASPKPSVACSQLALLLSSEAH
                     LQQYSREHALKTQSAHQAASERLAAMARLQENGQKDMSSFQLSKGVSGHLDGQARTLP
                     QSSKLAASKNNAAVFQNPMCGVPSSPKNTSYKNSLERNNIKQAANNSLLLHLLKSQTI
                     PTPMNGHSQHERGSSFESSTPTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCKHR
                     TEKPETERPVSLENLTQSLLNTWDPKVPGVDIKEDQDTSTNSKLNSHQKVTLLQLLLG
                     HKTEESVERNASPQEVHSDVTKFSPQNYTRTSVIESPSTNRTTPVSTPPLHTSSQGES
                     PINLSQHSLVIKWNSPPYACSTPASKLTNTVTGHLMDLTKGKESQAEKPAPSEGAQNS
                     ATFSASKLLQNLAQCGMQSSVPGEEQRPSKQLLSGHTDKPLGLIDRLNSPLLSNKANA
                     AEENKAFSSQPAGPEPGLPGCEIENLLERRTVLQLLLGNSNKGKSEKKERAPALDEAR
                     QEHSERPGNEQILMVKIKSEPCDDFQTHNTNVHLNHDAKSTPFLGGTPTIQRSSAALP
                     VSEDLKSEPASPQDFSFSKNGLLSRLLRQNQESYPADDQDKSHRNSELTPLESKNFCM
                     VPKKRKLYTEPLENPFKKMKNSAVDNANNHGGPEVLYGSLLNQEELKFSRNDLDYKYS
                     AGHSSASDGEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVTDNKKKGHKNNVP
                     NSKPEFSISSLNGLMYGSPQPGSCVDHRTFSYPGMVKTPLSSPFPEHLGCVGSRPEPG
                     LLNGCSVPVPGEKGPIKWVITDVEKNEYEKDSPRLTKTNPILYYMLQKGGNSVTTQET
                     QDKDIWGEPSSAESLSQVTVKEEMLPAAETKAAFFNLRSPYNSHMGNNASRPHSTNGE
                     AYGPLGNVLTIKKECE"
ORIGIN      
        1 tcggcggcgg agggaggagc gcggctgcgg cgggcgggcg gcgagcgagg cgctcaaagt
       61 cagcctcgca gacattgcag cagagccccg aactcgggag gcgacggcga ccgcggcgca
      121 ggcggaggac gagccggccc cagcccgccg gtgcgcagcg cccgtggcct cgcgcggccg
      181 cagggcacgg ctaacctggg aaggagggag cgacgcggat cggcggcccg gagccgcggc
      241 ggcctcggtg tggagtgtga gcggtggcag agctgttctc aggacccatt attttaacgt
      301 ttgggagaag cacatcctaa agatactgtt ctgtgcgttt ggcgaagagc agaagatgaa
      361 gaaagaaaag gagtgtgttc cctaagacct gggtgccatg ccagcgctgc gctaaggaag
      421 ttgcgagact ggtccttgcg tagccggtaa tcagggctgt agtctgcatt ggagtttgcc
      481 tgcctcttag acgtcactgc cagaagatac cctggtcagg atgtaacagt gcttgtctgc
      541 ctgactgcca tgggaggtga ttgactgacg ctcgcttcct gaaggcggat cttaccgaca
      601 agaaaagcat ctttaaagtg aacagaagcc gagcccctgt aagcacttgt attgaacatg
      661 actcatggag aagagcttgg ctctgatgtg catccggatt ctattgtttt aacttaccta
      721 gaaggattac taatgcatca ggcagcaggg ggatcaggta ctgccgtcga caaaaagtct
      781 gctggccaca gcgaagaaga ccagaacttt aacctctctg gcagtgcctt tcccacctgt
      841 caaagcaatg gtcccactct cagtacacag acataccagg gatctggcat gctgcacctc
      901 aaaaaagcca gactgctgca gtcttctgag gactggaacg cggctcagcg gaagaggctg
      961 tccgattcca tcgtgaattt aaacgtaaag aaggaggctt tgctggttgg catggttgac
     1021 agtgtgccta aaggcaaaca ggatagcaca gtactggcct ctttgctcca gtcattcagc
     1081 tccaggctgc agactgttgc tctgtcacag cagattagac agagcctcaa ggagcaagga
     1141 tatgccctca gccacgagtc gttgaaagtg gagaaggatt taaggtgcta cggcgtggcc
     1201 tcaagtcact taaaaactct gctgaagaaa agtaaaacta aggatcagaa gtcaggtacc
     1261 accctccctg atgtgactcc gaaccttatc agagatagct ttgttgagtc atcacctcat
     1321 catgtcggac aaagtggaac aaaggtcatg agtgagccct tgtcatgtgc tgcaagatta
     1381 caggctgttg ccagcatggt ggagaaaagg gctagtcccg ccgcctcccc caagcccagt
     1441 gttgcctgca gccagctagc gctgctcctt tccagtgagg cccacctgca gcagtactct
     1501 cgggaacacg ctctcaaaac acagagtgca catcaggcag caagtgaaag gctcgccgcc
     1561 atggccagat tgcaggagaa cggtcagaag gacatgagca gtttccagct ctctaagggg
     1621 gtgtctggcc atctcgacgg gcaggccaga acactgccac agtcaagcaa actggcggct
     1681 agcaagaata acgcagcagt ctttcagaat ccaatgtgcg gtgttccttc ctctcccaaa
     1741 aacacaagct ataagaactc tctggaaaga aacaacataa agcaagccgc taataacagt
     1801 ttgcttttac atcttctcaa aagccagacc atccccacgc cgatgaacgg gcacagccag
     1861 cacgagagag gaagtagttt tgagagtagc acacccacca cgatcgatga gtactctgat
     1921 aacaatccta gcttcacaga tgacagcagt ggggatgaaa gctcatactc caattgcgtt
     1981 cccatagacc tgtcctgcaa acaccggacc gagaaaccgg aaaccgagcg tcccgtttct
     2041 cttgagaacc taacccagtc cttgttaaac acgtgggatc ccaaagtgcc cggtgttgac
     2101 atcaaagaag atcaagatac ctcaacaaat tccaagctga attcacacca gaaagtcact
     2161 cttcttcaat tgctgcttgg ccataaaact gaggaaagtg ttgaaaggaa tgccagccct
     2221 caggaagtcc acagcgatgt gactaagttc agtcctcaga attacacaag gacttcagtc
     2281 attgagagcc ccagcaccaa caggactacc ccagtgagca ctccaccgct gcacacgtcc
     2341 agtcaaggag aatctcccat caatctttct caacactctc tggtcatcaa gtggaattcc
     2401 ccgccatatg cctgcagtac tcccgcttca aaactaacaa ataccgtgac tggccacctg
     2461 atggacctca caaaaggcaa agaatcacaa gcagagaaac cagccccgag tgaaggtgca
     2521 caaaattcgg cgacgttcag cgccagcaaa ctgttacaga atttggctca gtgcggaatg
     2581 cagtcttccg tgccagggga agagcagaga cccagcaaac agctgttaag tggacacaca
     2641 gacaaacctc tcggtctgat cgataggtta aatagccctc tgctctcaaa taaagcaaat
     2701 gcagctgaag aaaacaaagc cttcagcagt cagcctgcag ggcctgaacc aggacttcct
     2761 ggttgtgaga tagaaaacct actggaaaga cgcactgtcc ttcagttgct cctgggaaat
     2821 tccaacaaag ggaagagtga gaagaaagag agagctcccg cactggacga ggctcgtcag
     2881 gagcattcgg agagacccgg aaatgaacag atactgatgg tgaaaattaa atctgagccc
     2941 tgtgatgact tccagaccca caacacaaac gtgcatttaa accacgatgc caagagcacc
     3001 ccgttcttag gcgggactcc caccatccag aggagctcgg cggccttacc agtgtcagag
     3061 gacttgaaat cagagcctgc ttcacctcag gatttttctt tctcaaagaa cggtctgtta
     3121 agtcgactgc tgagacagaa tcaagagagt tacccagcag atgatcagga caagagtcac
     3181 agaaacagtg agctgacacc cctggaatcc aagaactttt gcatggtccc taaaaaaagg
     3241 aagctttata cggaaccact agaaaaccca tttaaaaaga tgaaaaatag tgccgtagat
     3301 aatgccaata atcatggtgg ccccgaagta ctctatgggt cgctgcttaa tcaggaggag
     3361 ctgaaattta gcagaaatga tctcgactat aaatactctg ctggtcacag ttcagccagc
     3421 gatggtgaac ataggagttg ggccagagag agcaaaagct tcaacgttct taagcagctg
     3481 cttctctcag agaactgtgt gcgagatttg tccccacaca ggagtaactc tgtcaccgac
     3541 aataaaaaga aaggacacaa aaacaacgtg cccaatagca aacctgaatt cagcatttct
     3601 tctttaaatg gactgatgta tggttcccct cagcctggca gttgtgtgga tcataggaca
     3661 ttttcatacc caggaatggt aaaaacccct ctgagctctc ctttcccaga gcacttgggc
     3721 tgtgtagggt ccaggccaga acctgggctt ttgaatggct gttctgtgcc cgtgcccggt
     3781 gagaagggac ccattaagtg ggtcatcaca gatgtggaga agaatgagta tgaaaaagac
     3841 tctccgagac tgaccaaaac caacccaatc ctctattaca tgctccagaa aggaggcaac
     3901 tctgttacca cacaagaaac acaggacaaa gacatctggg gggagccttc atctgccgag
     3961 agtctctcac aggttacagt caaggaagag atgcttcctg ccgcagaaac taaagctgct
     4021 ttcttcaatc tcagaagccc ttacaacagc catatgggaa ataatgcttc ccgcccgcac
     4081 agtacaaacg gagaagcgta tggacccctg ggaaacgtgc tcaccataaa aaaagagtgc
     4141 gagtgaaggt gtacctgcca tgtcatttgg gatcttttta gaactgatcg gtgtgaactt
     4201 gagacccgta tagataagag catgatttga gaaaagcatg ctgtaatcga aactccttcc
     4261 ttttgaaagt atcggtcact ggtgatgttt aaatatgcac actcatttcc gcttaacatt
     4321 agatgtcatg gggaagctag aggtttggtt gtttagtatt tctgtatgca tcagatgaca
     4381 actgtgacta gcctacgaat gaacctgttt tataactgta aacattaaaa tgcacaactt
     4441 caccagtagt ggattgatgc aacttgctgt ctttattggg gtctctcatt tcctatctca
     4501 gaagccagtc tacacaacat gtttgtaaca tgcacattgt tagctatttg gaagacaacc
     4561 aaattaggaa aaacccagaa gcctcgtgct gattcacacc tcatccgtct aaaagtaaga
     4621 aaaggcaatg cttacatttt tcacttttgc tagacaaaat tctttttaac tcttggaagg
     4681 gtttttgcgc ttcccaatgt gtctgccccg ccccagacct tttcaatatc gatttcttta
     4741 aaccttgtac tatttagtaa caattgatta caatagaggg gagtttacta gatccttaaa
     4801 aataaaaggc gatttccatt ttttaaatat tttgactact ttactaaatt aatactcctc
     4861 ctttttcaaa attcgagaag gtaatgctca ccttcgggca gtttcctgaa taattgacta
     4921 cttagaaatc atttttaaca aaagcagaaa tgggttttct cgggatggtt ttcaccatct
     4981 cttttgaaag ttaatcctca ccactcctgt gggacctgta acccttacaa ccagggtttc
     5041 ttcattctgg acacagaacc tgcattcgta ccatctgact atttggagaa gttgtttaac
     5101 atgcagattc ataggcagcc tctcaggtct acagaacagg gtctctgagt ggacccagga
     5161 gtcttccttc tgcctgaatc ctgacgtgtt ctgtatgtgt ttcttctgca cactgatgtt
     5221 tgaaaactgt ggcttaatga cttttccaga acatggaact ttaaagaaac tatttgatgc
     5281 ctatattttc ccccaataca gtcacatatc cactcaaaat ttgcaatatc gtagttccta
     5341 tattgctgtt atatctttgg aaatcgggtt cagaatactt tttatgacaa aaaaaaattg
     5401 ggtagagggg acaactttcc tatctgggtc aacatctcag gaaaatctgt gattatttat
     5461 ttgctctaat tagtaagatt aacttaatta gccttagggg tggaataaca gggccactta
     5521 gcaaactcag gtgatcccag gatggttggg aaacctctct tgaatacacc cttaccttct
     5581 attcaagctg tcctctgcac tgcagtgctt atggagctaa gagattcaac ccaagaaaga
     5641 catcaaactc tgattccctg aaaccaaatc aaagggcact tacctatcca tgacaggacc
     5701 ttcacagtcc cttcacggat cggttcattt taagcaggta tcacaactaa acactgatac
     5761 tgtcttgaaa gaacttaata gagagttgag ccacgtggaa tttcagtctc gaaacaagtt
     5821 agattttaag ttccattttt atagtccaca gttcatccac cagacaatat tttgtttttc
     5881 aattttgagc caggttaaca attaattgac ttgtggaaaa attattgggt cctcagccgt
     5941 tacgtaggaa gaagcttatt tgaagttgtc gtacgtactt gaagttgttt ctaagatttt
     6001 tttttatatt acaaatggac attgtttctt aattatctaa aattctaaat ggttattttt
     6061 ttctcaagat gatttgtaaa tagctaatgg atctgttgta tggtaatcag agtgtatatt
     6121 atgctacgtc agagaaagga gaaggcgtat gcttcttctg ctatgaaaaa ttccactggc
     6181 cagtgaagat tctttactcc atgtttatac tgtgacaatc tcattgtcta cactatataa
     6241 ataagcttta cactaagtca ttttttcttg gtcatggtga aagggctgga gccttagaaa
     6301 tctatcgtgg gatgctggtg tcctcagttg gaggcagtcg tcttacaatg caacagcact
     6361 taggtcaggg aaaatgtcca gggccagcat cgctatgctt tgttttgttt catttctgtt
     6421 ggaatgagaa tatgtaatgc aaaaataaac aggactataa agaatgttgt tctgacttac
     6481 tagagaatat ccctcatgtt ttgtttagag aaatcttaaa gaagagaaag ggcatacatc
     6541 cacaaattca ctgtgtgtgc atatgtaggt tcacatatgc acagacacag tttcaaggac
     6601 tgttttcgat atgtgggcag tttcttccta ataaagtcat ctgtgaatgg gtaccacagc
     6661 tctcattgac atcagtaagg tagcattacc tgtttattct ctgccacatc ttacagaaga
     6721 ataaactggt gagagtatat attttatata tatatataaa tgtgtatata tatatatatt
     6781 gacttgttac atgaagatgt taaaattggt ttttaaaggt gatgtaaata atgatttcct
     6841 taatgaaaaa aatacatatt ttgtattgtt ctaatgcaac agaaaaacct tttaatttct
     6901 ttggttcctg tatattccat gtattaagtg taaatataat cagacaggtt taaaaacatg
     6961 tgcatgtatg tatacagttg caagtctgga caaatgtata aaataaacct tttatttaag
     7021 tttgattacc tgctgcatga caagtgcatg ggaaaccctg tgcatccgtg catttgacag
     7081 aaaatgtctt aagtcagatc agatggtcgt ccacaaacga cagtattcca tttctggaca
     7141 tgacctctgc ggcttatgat ttgtgagaaa atgtgctttg aatccaaggg tcttgttttt
     7201 ttctttttaa tcaaccactt tcaacataaa gaactcacat agcgacttca caaatcgtaa
     7261 aatcccactg aaaacataac caggaacagt tcattgttcc taaatgctgg agtacaggca
     7321 cattaccatt catggtaaga gtcttggggt ttacagccag ttttgatgca atctgcttag
     7381 tgatataatt tgccattttt attattaaaa tttgatttct ttatgtgatg tcatgaattg
     7441 tacatactac agtgtgaatt tttttttgtt ttttttttta aatcctttag tgtttacttc
     7501 ctgcagtgaa ttgaataaat gagaaaaaat gcattgtctc taactttgaa acgacttatt
     7561 tttgtgggct ttctctggtt tttaggtttt tccattaatg ttaaagttca aggtcataaa
     7621 gagaaaaggg aaaagcaata gatcatgtat tttgtctgtt tcagaaaaat gaaaggggga
     7681 gaaagaagca actgaccagc aagttagtat atttagaaac gtgtaattaa agcatagctc
     7741 aacatgacag ctggcctgtg gtctgtcttc catttctcag tatgtaactg aatgaccact
     7801 acatgttttt tttaaactgg agtttgtaca gtgttccaaa ataaagttaa ttagatatat
     7861 a
//
