LOCUS       XM_039088447            8090 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor interacting protein 1
            (Nrip1), transcript variant X2, mRNA.
ACCESSION   XM_039088447
VERSION     XM_039088447.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088447.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8090
                     /gene="Nrip1"
                     /gene_synonym="RIP140"
                     /note="nuclear receptor interacting protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 18 ESTs, 1 long SRA read, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304157"
                     /db_xref="RGD:1311850"
     CDS             887..4375
                     /gene="Nrip1"
                     /gene_synonym="RIP140"
                     /codon_start=1
                     /product="nuclear receptor-interacting protein 1 isoform
                     X1"
                     /protein_id="XP_038944375.1"
                     /db_xref="GeneID:304157"
                     /db_xref="RGD:1311850"
                     /translation="MTHGEELGSDVHPDSIVLTYLEGLLMHQAAGGSGTAVDKKSAGH
                     SEEDQNFNLSGSAFPTCQSNGPTLSTQTYQGSGMLHLKKARLLQSSEDWNAAQRKRLS
                     DSIVNLNVKKEALLVGMVDSVPKGKQDSTVLASLLQSFSSRLQTVALSQQIRQSLKEQ
                     GYALSHESLKVEKDLRCYGVASSHLKTLLKKSKTKDQKSGTTLPDVTPNLIRDSFVES
                     SPHHVGQSGTKVMSEPLSCAARLQAVASMVEKRASPAASPKPSVACSQLALLLSSEAH
                     LQQYSREHALKTQSAHQAASERLAAMARLQENGQKDMSSFQLSKGVSGHLDGQARTLP
                     QSSKLAASKNNAAVFQNPMCGVPSSPKNTSYKNSLERNNIKQAANNSLLLHLLKSQTI
                     PTPMNGHSQHERGSSFESSTPTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCKHR
                     TEKPETERPVSLENLTQSLLNTWDPKVPGVDIKEDQDTSTNSKLNSHQKVTLLQLLLG
                     HKTEESVERNASPQEVHSDVTKFSPQNYTRTSVIESPSTNRTTPVSTPPLHTSSQGES
                     PINLSQHSLVIKWNSPPYACSTPASKLTNTVTGHLMDLTKGKESQAEKPAPSEGAQNS
                     ATFSASKLLQNLAQCGMQSSVPGEEQRPSKQLLSGHTDKPLGLIDRLNSPLLSNKANA
                     AEENKAFSSQPAGPEPGLPGCEIENLLERRTVLQLLLGNSNKGKSEKKERAPALDEAR
                     QEHSERPGNEQILMVKIKSEPCDDFQTHNTNVHLNHDAKSTPFLGGTPTIQRSSAALP
                     VSEDLKSEPASPQDFSFSKNGLLSRLLRQNQESYPADDQDKSHRNSELTPLESKNFCM
                     VPKKRKLYTEPLENPFKKMKNSAVDNANNHGGPEVLYGSLLNQEELKFSRNDLDYKYS
                     AGHSSASDGEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVTDNKKKGHKNNVP
                     NSKPEFSISSLNGLMYGSPQPGSCVDHRTFSYPGMVKTPLSSPFPEHLGCVGSRPEPG
                     LLNGCSVPVPGEKGPIKWVITDVEKNEYEKDSPRLTKTNPILYYMLQKGGNSVTTQET
                     QDKDIWGEPSSAESLSQVTVKEEMLPAAETKAAFFNLRSPYNSHMGNNASRPHSTNGE
                     AYGPLGNVLTIKKECE"
ORIGIN      
        1 tcggcggcgg agggaggagc gcggctgcgg cgggcgggcg gcgagcgagg cgctcaaagt
       61 cagcctcgca gacattgcag cagagccccg aactcgggag gcgacggcga ccgcggcgca
      121 ggcggaggac gagccggccc cagcccgccg gtgcgcagcg cccgtggcct cgcgcggccg
      181 cagggcacgg ctaacctggg aaggagggag cgacgcggat cggcggcccg gagccgcggc
      241 ggcctcggtg tggagtgtga gcggtggcag agctgttctc aggacccatt attttaacgt
      301 ttgggagaag cacatcctaa aggtgcgcag tagactgagg tggacgggag aatctgaaga
      361 ctccggtgac atcagagcca cttttcaacg accttctcaa cttcctttcc cacatagcag
      421 aggctcaggg cgagacagac gggatttaag tgacttcagc gttggacaaa ccaggcagag
      481 aaggaaccac cagagtcact ggactgctgt gtactcgctg ccctgcggtg agccaacata
      541 gcagactagg gatactgttc tgtgcgtttg gcgaagagca gaagatgaag aaagaaaagg
      601 agtgtgttcc ctaagacctg ggtgccatgc cagcgctgcg ctaaggaagt tgcgagactg
      661 gtccttgcgt agccggtaat cagggctgta gtctgcattg gagtttgcct gcctcttaga
      721 cgtcactgcc agaagatacc ctggtcagga tgtaacagtg cttgtctgcc tgactgccat
      781 gggaggtgat tgactgacgc tcgcttcctg aaggcggatc ttaccgacaa gaaaagcatc
      841 tttaaagtga acagaagccg agcccctgta agcacttgta ttgaacatga ctcatggaga
      901 agagcttggc tctgatgtgc atccggattc tattgtttta acttacctag aaggattact
      961 aatgcatcag gcagcagggg gatcaggtac tgccgtcgac aaaaagtctg ctggccacag
     1021 cgaagaagac cagaacttta acctctctgg cagtgccttt cccacctgtc aaagcaatgg
     1081 tcccactctc agtacacaga cataccaggg atctggcatg ctgcacctca aaaaagccag
     1141 actgctgcag tcttctgagg actggaacgc ggctcagcgg aagaggctgt ccgattccat
     1201 cgtgaattta aacgtaaaga aggaggcttt gctggttggc atggttgaca gtgtgcctaa
     1261 aggcaaacag gatagcacag tactggcctc tttgctccag tcattcagct ccaggctgca
     1321 gactgttgct ctgtcacagc agattagaca gagcctcaag gagcaaggat atgccctcag
     1381 ccacgagtcg ttgaaagtgg agaaggattt aaggtgctac ggcgtggcct caagtcactt
     1441 aaaaactctg ctgaagaaaa gtaaaactaa ggatcagaag tcaggtacca ccctccctga
     1501 tgtgactccg aaccttatca gagatagctt tgttgagtca tcacctcatc atgtcggaca
     1561 aagtggaaca aaggtcatga gtgagccctt gtcatgtgct gcaagattac aggctgttgc
     1621 cagcatggtg gagaaaaggg ctagtcccgc cgcctccccc aagcccagtg ttgcctgcag
     1681 ccagctagcg ctgctccttt ccagtgaggc ccacctgcag cagtactctc gggaacacgc
     1741 tctcaaaaca cagagtgcac atcaggcagc aagtgaaagg ctcgccgcca tggccagatt
     1801 gcaggagaac ggtcagaagg acatgagcag tttccagctc tctaaggggg tgtctggcca
     1861 tctcgacggg caggccagaa cactgccaca gtcaagcaaa ctggcggcta gcaagaataa
     1921 cgcagcagtc tttcagaatc caatgtgcgg tgttccttcc tctcccaaaa acacaagcta
     1981 taagaactct ctggaaagaa acaacataaa gcaagccgct aataacagtt tgcttttaca
     2041 tcttctcaaa agccagacca tccccacgcc gatgaacggg cacagccagc acgagagagg
     2101 aagtagtttt gagagtagca cacccaccac gatcgatgag tactctgata acaatcctag
     2161 cttcacagat gacagcagtg gggatgaaag ctcatactcc aattgcgttc ccatagacct
     2221 gtcctgcaaa caccggaccg agaaaccgga aaccgagcgt cccgtttctc ttgagaacct
     2281 aacccagtcc ttgttaaaca cgtgggatcc caaagtgccc ggtgttgaca tcaaagaaga
     2341 tcaagatacc tcaacaaatt ccaagctgaa ttcacaccag aaagtcactc ttcttcaatt
     2401 gctgcttggc cataaaactg aggaaagtgt tgaaaggaat gccagccctc aggaagtcca
     2461 cagcgatgtg actaagttca gtcctcagaa ttacacaagg acttcagtca ttgagagccc
     2521 cagcaccaac aggactaccc cagtgagcac tccaccgctg cacacgtcca gtcaaggaga
     2581 atctcccatc aatctttctc aacactctct ggtcatcaag tggaattccc cgccatatgc
     2641 ctgcagtact cccgcttcaa aactaacaaa taccgtgact ggccacctga tggacctcac
     2701 aaaaggcaaa gaatcacaag cagagaaacc agccccgagt gaaggtgcac aaaattcggc
     2761 gacgttcagc gccagcaaac tgttacagaa tttggctcag tgcggaatgc agtcttccgt
     2821 gccaggggaa gagcagagac ccagcaaaca gctgttaagt ggacacacag acaaacctct
     2881 cggtctgatc gataggttaa atagccctct gctctcaaat aaagcaaatg cagctgaaga
     2941 aaacaaagcc ttcagcagtc agcctgcagg gcctgaacca ggacttcctg gttgtgagat
     3001 agaaaaccta ctggaaagac gcactgtcct tcagttgctc ctgggaaatt ccaacaaagg
     3061 gaagagtgag aagaaagaga gagctcccgc actggacgag gctcgtcagg agcattcgga
     3121 gagacccgga aatgaacaga tactgatggt gaaaattaaa tctgagccct gtgatgactt
     3181 ccagacccac aacacaaacg tgcatttaaa ccacgatgcc aagagcaccc cgttcttagg
     3241 cgggactccc accatccaga ggagctcggc ggccttacca gtgtcagagg acttgaaatc
     3301 agagcctgct tcacctcagg atttttcttt ctcaaagaac ggtctgttaa gtcgactgct
     3361 gagacagaat caagagagtt acccagcaga tgatcaggac aagagtcaca gaaacagtga
     3421 gctgacaccc ctggaatcca agaacttttg catggtccct aaaaaaagga agctttatac
     3481 ggaaccacta gaaaacccat ttaaaaagat gaaaaatagt gccgtagata atgccaataa
     3541 tcatggtggc cccgaagtac tctatgggtc gctgcttaat caggaggagc tgaaatttag
     3601 cagaaatgat ctcgactata aatactctgc tggtcacagt tcagccagcg atggtgaaca
     3661 taggagttgg gccagagaga gcaaaagctt caacgttctt aagcagctgc ttctctcaga
     3721 gaactgtgtg cgagatttgt ccccacacag gagtaactct gtcaccgaca ataaaaagaa
     3781 aggacacaaa aacaacgtgc ccaatagcaa acctgaattc agcatttctt ctttaaatgg
     3841 actgatgtat ggttcccctc agcctggcag ttgtgtggat cataggacat tttcataccc
     3901 aggaatggta aaaacccctc tgagctctcc tttcccagag cacttgggct gtgtagggtc
     3961 caggccagaa cctgggcttt tgaatggctg ttctgtgccc gtgcccggtg agaagggacc
     4021 cattaagtgg gtcatcacag atgtggagaa gaatgagtat gaaaaagact ctccgagact
     4081 gaccaaaacc aacccaatcc tctattacat gctccagaaa ggaggcaact ctgttaccac
     4141 acaagaaaca caggacaaag acatctgggg ggagccttca tctgccgaga gtctctcaca
     4201 ggttacagtc aaggaagaga tgcttcctgc cgcagaaact aaagctgctt tcttcaatct
     4261 cagaagccct tacaacagcc atatgggaaa taatgcttcc cgcccgcaca gtacaaacgg
     4321 agaagcgtat ggacccctgg gaaacgtgct caccataaaa aaagagtgcg agtgaaggtg
     4381 tacctgccat gtcatttggg atctttttag aactgatcgg tgtgaacttg agacccgtat
     4441 agataagagc atgatttgag aaaagcatgc tgtaatcgaa actccttcct tttgaaagta
     4501 tcggtcactg gtgatgttta aatatgcaca ctcatttccg cttaacatta gatgtcatgg
     4561 ggaagctaga ggtttggttg tttagtattt ctgtatgcat cagatgacaa ctgtgactag
     4621 cctacgaatg aacctgtttt ataactgtaa acattaaaat gcacaacttc accagtagtg
     4681 gattgatgca acttgctgtc tttattgggg tctctcattt cctatctcag aagccagtct
     4741 acacaacatg tttgtaacat gcacattgtt agctatttgg aagacaacca aattaggaaa
     4801 aacccagaag cctcgtgctg attcacacct catccgtcta aaagtaagaa aaggcaatgc
     4861 ttacattttt cacttttgct agacaaaatt ctttttaact cttggaaggg tttttgcgct
     4921 tcccaatgtg tctgccccgc cccagacctt ttcaatatcg atttctttaa accttgtact
     4981 atttagtaac aattgattac aatagagggg agtttactag atccttaaaa ataaaaggcg
     5041 atttccattt tttaaatatt ttgactactt tactaaatta atactcctcc tttttcaaaa
     5101 ttcgagaagg taatgctcac cttcgggcag tttcctgaat aattgactac ttagaaatca
     5161 tttttaacaa aagcagaaat gggttttctc gggatggttt tcaccatctc ttttgaaagt
     5221 taatcctcac cactcctgtg ggacctgtaa cccttacaac cagggtttct tcattctgga
     5281 cacagaacct gcattcgtac catctgacta tttggagaag ttgtttaaca tgcagattca
     5341 taggcagcct ctcaggtcta cagaacaggg tctctgagtg gacccaggag tcttccttct
     5401 gcctgaatcc tgacgtgttc tgtatgtgtt tcttctgcac actgatgttt gaaaactgtg
     5461 gcttaatgac ttttccagaa catggaactt taaagaaact atttgatgcc tatattttcc
     5521 cccaatacag tcacatatcc actcaaaatt tgcaatatcg tagttcctat attgctgtta
     5581 tatctttgga aatcgggttc agaatacttt ttatgacaaa aaaaaattgg gtagagggga
     5641 caactttcct atctgggtca acatctcagg aaaatctgtg attatttatt tgctctaatt
     5701 agtaagatta acttaattag ccttaggggt ggaataacag ggccacttag caaactcagg
     5761 tgatcccagg atggttggga aacctctctt gaatacaccc ttaccttcta ttcaagctgt
     5821 cctctgcact gcagtgctta tggagctaag agattcaacc caagaaagac atcaaactct
     5881 gattccctga aaccaaatca aagggcactt acctatccat gacaggacct tcacagtccc
     5941 ttcacggatc ggttcatttt aagcaggtat cacaactaaa cactgatact gtcttgaaag
     6001 aacttaatag agagttgagc cacgtggaat ttcagtctcg aaacaagtta gattttaagt
     6061 tccattttta tagtccacag ttcatccacc agacaatatt ttgtttttca attttgagcc
     6121 aggttaacaa ttaattgact tgtggaaaaa ttattgggtc ctcagccgtt acgtaggaag
     6181 aagcttattt gaagttgtcg tacgtacttg aagttgtttc taagattttt ttttatatta
     6241 caaatggaca ttgtttctta attatctaaa attctaaatg gttatttttt tctcaagatg
     6301 atttgtaaat agctaatgga tctgttgtat ggtaatcaga gtgtatatta tgctacgtca
     6361 gagaaaggag aaggcgtatg cttcttctgc tatgaaaaat tccactggcc agtgaagatt
     6421 ctttactcca tgtttatact gtgacaatct cattgtctac actatataaa taagctttac
     6481 actaagtcat tttttcttgg tcatggtgaa agggctggag ccttagaaat ctatcgtggg
     6541 atgctggtgt cctcagttgg aggcagtcgt cttacaatgc aacagcactt aggtcaggga
     6601 aaatgtccag ggccagcatc gctatgcttt gttttgtttc atttctgttg gaatgagaat
     6661 atgtaatgca aaaataaaca ggactataaa gaatgttgtt ctgacttact agagaatatc
     6721 cctcatgttt tgtttagaga aatcttaaag aagagaaagg gcatacatcc acaaattcac
     6781 tgtgtgtgca tatgtaggtt cacatatgca cagacacagt ttcaaggact gttttcgata
     6841 tgtgggcagt ttcttcctaa taaagtcatc tgtgaatggg taccacagct ctcattgaca
     6901 tcagtaaggt agcattacct gtttattctc tgccacatct tacagaagaa taaactggtg
     6961 agagtatata ttttatatat atatataaat gtgtatatat atatatattg acttgttaca
     7021 tgaagatgtt aaaattggtt tttaaaggtg atgtaaataa tgatttcctt aatgaaaaaa
     7081 atacatattt tgtattgttc taatgcaaca gaaaaacctt ttaatttctt tggttcctgt
     7141 atattccatg tattaagtgt aaatataatc agacaggttt aaaaacatgt gcatgtatgt
     7201 atacagttgc aagtctggac aaatgtataa aataaacctt ttatttaagt ttgattacct
     7261 gctgcatgac aagtgcatgg gaaaccctgt gcatccgtgc atttgacaga aaatgtctta
     7321 agtcagatca gatggtcgtc cacaaacgac agtattccat ttctggacat gacctctgcg
     7381 gcttatgatt tgtgagaaaa tgtgctttga atccaagggt cttgtttttt tctttttaat
     7441 caaccacttt caacataaag aactcacata gcgacttcac aaatcgtaaa atcccactga
     7501 aaacataacc aggaacagtt cattgttcct aaatgctgga gtacaggcac attaccattc
     7561 atggtaagag tcttggggtt tacagccagt tttgatgcaa tctgcttagt gatataattt
     7621 gccattttta ttattaaaat ttgatttctt tatgtgatgt catgaattgt acatactaca
     7681 gtgtgaattt ttttttgttt ttttttttaa atcctttagt gtttacttcc tgcagtgaat
     7741 tgaataaatg agaaaaaatg cattgtctct aactttgaaa cgacttattt ttgtgggctt
     7801 tctctggttt ttaggttttt ccattaatgt taaagttcaa ggtcataaag agaaaaggga
     7861 aaagcaatag atcatgtatt ttgtctgttt cagaaaaatg aaagggggag aaagaagcaa
     7921 ctgaccagca agttagtata tttagaaacg tgtaattaaa gcatagctca acatgacagc
     7981 tggcctgtgg tctgtcttcc atttctcagt atgtaactga atgaccacta catgtttttt
     8041 ttaaactgga gtttgtacag tgttccaaaa taaagttaat tagatatata
//
