LOCUS       NM_001415104            3177 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus nuclear receptor binding protein 2 (Nrbp2), mRNA.
ACCESSION   NM_001415104 XM_006241885
VERSION     NM_001415104.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3177)
  AUTHORS   McKnight,N.C., Jefferies,H.B., Alemu,E.A., Saunders,R.E.,
            Howell,M., Johansen,T. and Tooze,S.A.
  TITLE     Genome-wide siRNA screen reveals amino acid starvation-induced
            autophagy requires SCOC and WAC
  JOURNAL   EMBO J 31 (8), 1931-1946 (2012)
   PUBMED   22354037
REFERENCE   2  (bases 1 to 3177)
  AUTHORS   Larsson,J., Forsberg,M., Brannvall,K., Zhang,X.Q., Enarsson,M.,
            Hedborg,F. and Forsberg-Nilsson,K.
  TITLE     Nuclear receptor binding protein 2 is induced during neural
            progenitor differentiation and affects cell survival
  JOURNAL   Mol Cell Neurosci 39 (1), 32-39 (2008)
   PUBMED   18619852
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Dec 21, 2022 this sequence version replaced XM_006241885.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.26112.1,
                                           SRR21887622.3364339.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-257               JAXUCZ010000007.1  109685332-109685588 c
            258-380             JAXUCZ010000007.1  109684763-109684885 c
            381-482             JAXUCZ010000007.1  109684593-109684694 c
            483-572             JAXUCZ010000007.1  109684408-109684497 c
            573-613             JAXUCZ010000007.1  109684201-109684241 c
            614-708             JAXUCZ010000007.1  109684000-109684094 c
            709-732             JAXUCZ010000007.1  109683852-109683875 c
            733-816             JAXUCZ010000007.1  109683699-109683782 c
            817-872             JAXUCZ010000007.1  109683561-109683616 c
            873-968             JAXUCZ010000007.1  109683388-109683483 c
            969-1101            JAXUCZ010000007.1  109682840-109682972 c
            1102-1204           JAXUCZ010000007.1  109682625-109682727 c
            1205-1255           JAXUCZ010000007.1  109682476-109682526 c
            1256-1391           JAXUCZ010000007.1  109682262-109682397 c
            1392-1445           JAXUCZ010000007.1  109681316-109681369 c
            1446-1509           JAXUCZ010000007.1  109681168-109681231 c
            1510-1565           JAXUCZ010000007.1  109681027-109681082 c
            1566-3177           JAXUCZ010000007.1  109679330-109680941 c
FEATURES             Location/Qualifiers
     source          1..3177
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..3177
                     /gene="Nrbp2"
                     /note="nuclear receptor binding protein 2"
                     /db_xref="GeneID:680451"
                     /db_xref="RGD:1591749"
     exon            1..257
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..1634
                     /gene="Nrbp2"
                     /codon_start=1
                     /product="nuclear receptor-binding protein 2"
                     /protein_id="NP_001402033.1"
                     /db_xref="GeneID:680451"
                     /db_xref="RGD:1591749"
                     /translation="MAAPEPAPRRGREREREDESEDESDILEESPCGRWQKRREQVNQ
                     GNMPGIQSTFLAMDTEEGVEVVWNELHFGDRKAFAAHEEKIQTMFEQLALVDHPNIVK
                     LHKYWLDASEARARVIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALS
                     FLHACSPPIIHGNLTSDTIFIQHNGLIKIGSVWYRIFSNALPDDLRSPIRTEREELRN
                     LHFFPPEYGEVNDGTAVDIFSFGMCALEMAVLEIQANGDTRVTEEAIARARHSLSDPN
                     MREFILSCLARDPARRPSAHNLLFHRVLFEVHSLKLLAAHCFIQHQYLMPENVVEEKT
                     KAMDLHAVLAEMPQPHGPPMQWRYSEVSFLELDKFLEDVRNGIYPLMNFAAARPLGLP
                     RVLAPPPEEAQKAKTPTPEPFDSETRKVVQMQCNLERSEDKARWHLTLLLVLEDRLHR
                     QLTYDLLPTDSAQDLAAELVHYGFLHEDDRTKLAAFLETTFLKYRGTQA"
     exon            258..380
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            381..482
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            483..572
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            573..613
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            614..708
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            709..732
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            733..816
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            817..872
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            873..968
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1101
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1204
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1255
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1391
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1392..1445
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1509
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1565
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1566..3177
                     /gene="Nrbp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aattcccgga gctgagaagg gctcgcggcg gccgctccgc tgggctccag gttgggctgc
       61 cgggcgctgg gccagggcgg gcgggagagc gacgggggct tgcgcggagg gcggcggcct
      121 gggctcgccg agccatggcg gccccggagc cggcgccgag gagaggccgg gaacgcgagc
      181 gggaggacga gagcgaggac gagagcgaca tcctggagga gagcccgtgt ggccgctggc
      241 agaagcggcg ggagcaggtg aaccaaggga acatgcccgg gattcagagc acctttctgg
      301 ccatggacac ggaagagggg gtagaagtgg tgtggaacga actccacttc ggggatagga
      361 aggcctttgc ggcccatgag gagaagatcc agaccatgtt tgagcagctg gcgctggtgg
      421 accaccccaa catcgtcaag ctgcacaagt attggctgga tgcctctgag gcccgcgcga
      481 gggtcatctt catcacagaa tacgtgtcgt ctggcagcct caagcagttc ctcaaaaaga
      541 ccaagaagaa ccacaaggcc atgaacgccc gggcctggaa gcgctggtgt acgcagatcc
      601 tgtctgcact cagttttttg cacgcctgca gtccccccat catccacgga aacctgacca
      661 gcgacacgat cttcattcag cacaatggcc tcatcaagat cggctctgtg tggtaccgca
      721 tcttctccaa tgcacttcct gacgatctcc ggagccctat aagaactgaa cgggaggagc
      781 tccgaaacct gcactttttc ccaccagagt atggcgaggt caacgatggg actgctgtgg
      841 acatcttctc ctttgggatg tgtgcactgg agatggcggt cttggagatc caagccaacg
      901 gggatacccg agtcacagaa gaagctattg ctcgggccag gcactcgctg agtgacccca
      961 acatgcggga attcatcctc tcctgcctgg cccgggaccc tgcccgccga ccctcagccc
     1021 acaacctcct cttccaccga gtgctctttg aggtgcactc gctgaagctg ctggcagccc
     1081 actgtttcat ccagcaccag tacctcatgc ctgagaatgt ggtagaggaa aagaccaagg
     1141 ccatggacct ccatgcagtg ttggctgaga tgccccagcc ccatggaccc ccaatgcagt
     1201 ggcggtactc agaggtttcc ttcttggagc tggacaaatt cctagaggat gtcaggaatg
     1261 gcatctatcc actcatgaat ttcgctgctg ctcggccctt gggacttcct cgtgtgttgg
     1321 ccccaccccc agaggaggcc caaaaggcca aaactccaac cccagaaccc tttgactcgg
     1381 agaccaggaa ggtggtccag atgcagtgca acctggaaag aagcgaggac aaggctcggt
     1441 ggcaccttac tctgcttttg gtgcttgagg accggttaca tcggcagctg acctatgatc
     1501 tgctcccaac cgacagtgcc caggacctcg ccgccgaact agtgcactat ggcttcctgc
     1561 acgaggatga ccggacaaag ctagcagcct ttctggagac cacttttctc aagtaccgtg
     1621 ggacacaagc gtgacctttc cagtcctgac agcccagcag agataccagg actcagggtt
     1681 gtccacttgt caaagagccc cacactgctc aaagctgcct tctgcctgtg ttccctggaa
     1741 ctgaatacag gtcttgctag tgaagacccc tcccccacag ctttctgcag cagtgtggga
     1801 ccctggggtg gtgatggagc cctgagcctg gatgggagtg gatacaggtc agttagggga
     1861 cccacactct atctggtact ggacaacagc catgccttca ggtggcagaa acctaggaag
     1921 gagcctggtc tcaaaagtaa tagggccctt caggtgtcag acacagtgct gggcatcagg
     1981 cagaccaaac ctgacctgat tggagactca tagattagag agcttggatt agacctgtgg
     2041 ccaggaaatt ccatggtcac cgctcagacc agtcccgatt gccttgcaga cctgccttga
     2101 gccgtctctc tgatctttca cacatttgag accaggacct gtgtcctcca caaagccctt
     2161 gggtaggatc tttctgttca tcaaccctct ggcctaaggg ctcagaggtc aggcgtccac
     2221 tgcatcccct ccccggggaa gtcaatgtgt ttgagtctga ggatgtgggt tcctctttct
     2281 ccttaaccca acttgtctct cattcttgct gatttcagag tcctggtaaa ttcttcccct
     2341 cagaaccacc ctgatttctt ggttcttgaa ccgcctcctc tcttccaact tcaaatttaa
     2401 ggtcttaaac gtttttaaat gtgtatataa atgtaatgcc tccacgttcc ttttgaaacc
     2461 ttcacgtgtg aaaccaggaa ggctcactac tgtactatta atagttccac attgctgctg
     2521 ttaacacata tcatagaccc agtggtttga gacaacacac atacagttct gtacatcaaa
     2581 agtttaatac tagattaaga cccaggctaa gttcctttct ggaagttggg gctcacctcc
     2641 tgctccttca agctattggc agaattcact tccctacgat ggtaaggtag aaattcctgt
     2701 tttcttacag ctgccaacta agagcccttc tcagcttcta gaggccacca atttttctta
     2761 gctcttcttc tatccccttc aagaccagca gcatcaagtt gaatcttgtc atggactaac
     2821 tgtctggttc tccactgctg gggagtttcg gggccttttg tgagttggtt ggacccacct
     2881 gggtaacctg ggatgatatc cttctcaggg tctgtagatt aaccacatct gcacagtacc
     2941 ttttgctctg gagactaatc atcctgggtc ttggtgctta gagagtagac gtggatggtg
     3001 gatgtcgtta ctatgttgcc ttccatgcca ccttagccca aaccaaaacc tatattaagc
     3061 aaagttgtca tgggacattt aataaattaa atgaactctc attgtgcatg gtctgacata
     3121 gtctattttt aaaatccaca acagattgta cagataatta aactgaactt gtaagca
//
