LOCUS       XM_017592142            6250 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor subfamily 6, group A,
            member 1 (Nr6a1), transcript variant X1, mRNA.
ACCESSION   XM_017592142
VERSION     XM_017592142.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001100861.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017592142.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6250
                     /gene="Nr6a1"
                     /note="nuclear receptor subfamily 6, group A, member 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 17 ESTs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 33 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362125"
                     /db_xref="RGD:1564740"
     CDS             210..1697
                     /gene="Nr6a1"
                     /codon_start=1
                     /product="nuclear receptor subfamily 6 group A member 1
                     isoform X1"
                     /protein_id="XP_017447631.2"
                     /db_xref="GeneID:362125"
                     /db_xref="RGD:1564740"
                     /translation="MERDERPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELD
                     PGTNGETDGLTLGQGHIPVSVPDDRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRS
                     ICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGP
                     VQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSPGNRVSESNQPSPGSTLSSSRSVE
                     LNGFMTFRDQYMGMSVPPHYQYIPHLFSYSGHSPLLPPQARSLDPQSYSLIHQLMSAE
                     DLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCL
                     LSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYH
                     KFHQLKVSNEEYACMKAINFLNQDIRGLSSASQLEQLNKRYWYICQDFTEYKYTHQPN
                     RFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSTVKE"
ORIGIN      
        1 acgtcagagg agggagctgg ccagtgctga gggggcgcgg cgcggagggg cgcggagccg
       61 ggtggctcag gggcccagag tgttcggcgg ccgagagcct gccggcccct gacagccccc
      121 tcccccccgg tggaagacca ggacgacgac tacgagggcg caggtcatgg cggaacatcg
      181 aagccagcga gggccctgag caccgccgca tggagcggga cgaacggcca cctagcggag
      241 ggggaggcgg cgggggctcg gcggggttcc tggagccgcc cgccgcgctc cctccgccgc
      301 cgcgcaacgg tttctgtcag gatgaattgg cagagcttga tccaggcact aatggggaga
      361 ctgatggttt aacacttggc caaggccata tacctgtttc tgttccagat gatcgagcgg
      421 aacaacgaac atgtctcatc tgtggggacc gtgctacagg cttacactat gggatcatct
      481 cctgcgaggg ctgcaagggt tttttcaaga ggagcatttg caataaacgg gtgtatcggt
      541 gcagtcggga caagaactgt gtcatgtccc ggaagcagag gaacagatgc cagtactgcc
      601 gcctgctcaa gtgtctccag atgggcatga acaggaaggc tatcagagaa gacggcatgc
      661 ctggaggccg gaacaagagc attgggccag tccagatatc agaagaagag attgaaagaa
      721 tcatgtctgg acaggagttt gaggaagaag ccaatcactg gagcaaccat ggtgacagtg
      781 accacagttc tcctgggaac agggtttcag agagcaacca gccctcacca ggctccacac
      841 tgtcatccag taggtctgtg gaactaaatg gattcatgac cttcagggat cagtacatgg
      901 ggatgtcggt gcctccacat tatcagtaca taccacacct ttttagctat tctggccact
      961 caccactttt gcccccacaa gctcgaagcc tggaccctca gtcctacagt ctgattcatc
     1021 agctgatgtc agcggaagac ctggagccat tggggacacc tatgttgatt gaagatgggt
     1081 acgctgtgac acaggcagaa ctgtttgctc tgctttgccg cctggccgat gagttgctct
     1141 ttaggcagat tgcctggatc aagaagctgc ctttcttctg cgagctctca atcaaggatt
     1201 acacgtgcct cctgagctcc acgtggcagg agttaatcct gctctcgtcc ctcacagttt
     1261 acagcaagca gatctttgga gagctggctg atgtcactgc caagtactca ccctctgatg
     1321 aggaactgca cagatttagt gatgaaggga tggaggtgat tgaacgactc atctacctgt
     1381 atcacaagtt ccatcagcta aaggtcagca atgaggagta tgcatgcatg aaagcaatta
     1441 acttcctgaa tcaagatatc aggggtctga gcagtgcctc acagctggaa caactgaaca
     1501 agcggtattg gtacatttgt caggatttca ctgaatataa atatacacat cagccaaacc
     1561 gctttcctga tctgatgatg tgcttgccag agatccgata catcgcaggc aagatggtga
     1621 atgtgcccct ggagcagctg cccctcctct ttaaggtggt gctgcactcc tgcaagacaa
     1681 gcacagtgaa ggagtgacct gtgccctgca cctccttgga ccacccgcgg tgccttgggt
     1741 aggcaggaca ggctccagag gaaagggcca gagaccagat ggagactgtg gagcagcttc
     1801 ctccatcgca aggagacttg tttgtttgtc tgtttttaac ctcatttttc tatatattta
     1861 tttcacgaca gagttgaatg tatggccttc aacatgatgc acatgctttt gtgtgaatgc
     1921 agcagatgca tttccttgca gtttacagaa tgtgaagatg tttaatgtta ccgtgttgtc
     1981 attgtttaga gataggggtt tttttgtatt ttgagggaga gggtgggatg gactaggtga
     2041 ctatttccat aatgttgaca aagacaacta cctcagtgga aacgggtgta tgaccatccc
     2101 taccttttcc acactttctc agcagatata cacttgtctg ttagagagca cactgccttt
     2161 tttatagcca cagacttctg agtaaaagaa tacaccaaag gagccaagtg gtatagggag
     2221 attgactaat ggccagtggg atgtctgaga ggccattttg attttaatcc tcaacatttg
     2281 atgaggattt accatcatct ggtcccacag gctggaagga cagaaagtct gcccgacctt
     2341 ctgctgcacc cctcccccac acgctgttgg ctgtggctgc tgctgtcatg ttttcatcag
     2401 gtagagccct gacagtcagt cagtctgtag ggcttgcctc ccagcgccct tatggctcat
     2461 agctgcctgg tttcctgacc caggtctacc aggcctacct ccttcagact ccgtccctcc
     2521 ctcttatgaa tttgacttcc tgtcagtcct ttagaaaggc agcaggaaaa tgccatgttc
     2581 tgaattctga tgacatttct gatttgttct tctttaaatt gtttccctta aaaggtaagg
     2641 ggtggcgaag gccaggctgc tgagagagta aagactcctt tggaagtcca tgttctcacc
     2701 ccaccttatc cccacaacca aatccaaaac tgccattttt taacagtaga aagggccaga
     2761 aactttgctc ctaaattttg ttgtaaagtt ctcccattat ttccaaaatg agatgcattt
     2821 gccaggctct agaacagaaa gccaagaccc agagaagccc agctattcct cccaagtatt
     2881 atcagtggtc tggcctacca cagtttgcag ggatggagcc agaagcacct agaagggaaa
     2941 ggggctttaa actacctcat gtttctaagg gcttgactgc tgcttctgca gatgcagcct
     3001 gaaccccctg tgctttactg cctaccccat ctagttctag gaagagttct tgccctccag
     3061 actttggcca ggaccaacta ggtttgtctt agagttattt cagctgcttt cccctttgcc
     3121 tgtaccaggc tgtcctacca ccagtacccc agacagatgc tccactggct tgtatccctt
     3181 gatggggcct gcctcaccca cattatctct ttagcctgct ttgtcaggaa ctgtttacgc
     3241 ttccccagtg gagcctatta acttacccag gaggccaccg catcctgtgc ctcctaggta
     3301 gtctccactt gtcaggtttt ctctctagtg aaatattacg ggtaccagca aagtgacaat
     3361 atgtcctttg atgtccaaag ttcaaagcat tatttcttct catccttatt ccccaggaga
     3421 gagagagaga gagagagaga gagagagaga gagatgtgtt cctcaagatt ccagatagaa
     3481 tgtttttcac atgtttatgg gaagatatat gtattggtgt gtctgtctgt ttctgagctc
     3541 acaatctttt cttgtttgcc tgaattttta tatttaacca accagatcac gttatttggc
     3601 tccgggtcag attctcagct gctttcctca agctagaaat cagagacaca gatcagagac
     3661 agtgcctgtg tgcacacagc agctttcttt gcttagacct ccatttgtca aattgttagt
     3721 tttttaaatt gcttttcaaa ttagcatttt acctgttgtg ttggatgtca aagctctgat
     3781 gagacaagaa catatctctc caataatgta gtattaaaca gagcaagttg ttaatttgta
     3841 gagtggggga aaggttctgc aagttgccat tgtacaaatc catttttaca aatgtttgca
     3901 gcagattcca cagaacaaag agcccattca ttgccaagag ccctgcagaa tctctgagcc
     3961 aagtggctgt gtgttccgag ctggagcctg acctgtggac cgcctttaat gtcttctgca
     4021 cccaggcctt ttatgacatg ggcttctttt aaacagggta aagtaaatgt gatgcattgc
     4081 aaactcaggt attatgagga gaaggtagga gtgtagctag cagcgtggag acattaggtc
     4141 agccactaga tgtatttgtg attttggttt gaaggacaca gagaaaggtt ggaggaggag
     4201 gtttggtatg cttgtttttt gccttttttc cttataatgt ttggttaaca ggcagccttt
     4261 tagctagtgg aagaaggaaa aacttgtgca tgttatatct cattcctctc tctcctgacc
     4321 cctctgaccc aggccactga aagtactcac tttgaatgag aatttttcta ccataaaaat
     4381 aataaagccc ccaaagccat gtggaaaagg agaacccacc tccttgcact atgccgaaac
     4441 atacaggttt ccccttcctt ttcttatgtt tactttcttg acccaagact gaagtggagt
     4501 cttggagctt tgtaattcct gttctctgct ccttttatag accatctgtg tcctctgcaa
     4561 ggtttgctag tctcaccctt agtttggaga aattccctac acctcatctc aaagcactct
     4621 acctggcttc ggacacccag tgcccagggc caacctacaa gtgaaggagg caggcctcta
     4681 gggtagaggg aagtaggcag gaacctccct gtcctgatct tagaacagtg gaagtgtagg
     4741 agaacaccca cacatctctg gctttagaat actggggttt ttttgtttgt ttgtttttta
     4801 attgcagttg ttttaagaaa ttcatccttt tggaccagcc gttccactaa acttggttct
     4861 ttttctttac tgcttttttt aaacttgaaa aaagaaagaa aaaaaaaaga aagaaaagaa
     4921 agcccactaa ctgactcccc caccttggtc tgtgggaatg cccgcaccct ctgccgtcca
     4981 tcctcctccc ttctcctcat gcagtgtctg tgaagtagag tcttatctgt ttcttaggat
     5041 gaaaaacggc aatcaaccca ccaggtgctg gaaactggtc agccttgaag caggcatttc
     5101 tgggaccaca gctcagggat gtgtatttaa ttacagggtc cccagaaagc cctctcttgg
     5161 ctgccacaag tagcatcttt cctggacttg agagtcaggc cctgacaacc tcctcagagt
     5221 gagcagcccc aggctgaact gaaagcaagt ttgccttgcc tattggtctg ggcttcctca
     5281 acacttttga ccgtcctaca cattagtctt tctggtgctc gctcatgaga agcctagacc
     5341 ctctgcccag gacaaaccct tttcttatcc ggcagtccta aatacacctt gctttgggtg
     5401 tcagctgcag gctcaagtga aagatgtggg aaaggctagg gcctgctcca aacccaagaa
     5461 aactgtgcta ctggtggaag ctagtcttct aaaccctgaa gccagccctg ccagccagag
     5521 ggttctcttg ctctttgctg acctttttct tagccgaaat ataatagatg ataatgtttt
     5581 ttatcaagtt tccatggggg ggaaaaagac tacctcttga gtgacatcct ggttgattcc
     5641 tctcttgagg agtcctgtgg gaaaagactg ctgtagctcc cgtgctgttt acatgtttct
     5701 gtcgggaaca aaaccctgga ctgttgtgtt tttgtctgtg ctgccatccc aggcctgtga
     5761 taggagcttg tggctgtatt gtaatgtctg ggcagtgtct ggggagtcct ttccacctgc
     5821 ccagctaggg acaggccatg gctgctagac gaggcctgta ccccccttcc tatgctccat
     5881 agcttggatt tcagggactc tgatggcaag tgagtgcgtc gtgaacctac ctcaggctac
     5941 ctcccagtcc tcccacagtt ctgtgtagga atcgaatgaa tggatgtctc tgagcccttg
     6001 ttcccaaagg gccggccaag ggctgcctgc cagcctggct ccatcaaccc tgcatgacca
     6061 aatgatagtt ggcgggctct gcaggctgct caggccctct gctacctccc acacttgcct
     6121 gctggcaaga agtgggccct gttctgtgaa ttgactacct gtggaaatgt gaccaattag
     6181 tatgaaatgc atgtttagca agtgttaggt actgtatttg aaccaataaa tgtgaatcct
     6241 ctgcacatgc
//
