LOCUS       XM_039082428            1951 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor subfamily 2, group E,
            member 3 (Nr2e3), mRNA.
ACCESSION   XM_039082428
VERSION     XM_039082428.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427660.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1951
                     /gene="Nr2e3"
                     /note="nuclear receptor subfamily 2, group E, member 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 ESTs, 3 Proteins, and 38% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100365683"
                     /db_xref="RGD:2318602"
     CDS             221..1408
                     /gene="Nr2e3"
                     /codon_start=1
                     /product="photoreceptor-specific nuclear receptor"
                     /protein_id="XP_038938356.1"
                     /db_xref="GeneID:100365683"
                     /db_xref="RGD:2318602"
                     /translation="MSSTVSASVVPMAVTASKKESPGRWGLGEDPTGVGPSLQCRVCG
                     DSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCL
                     QAGMNQDAVQNERQPRSLAQVHLESMEPGSDPRPEPVVASPALAGPSPRGPTSVSAAR
                     AMGHHFMASLISAETCAKLEPEDAEENIDVTSNDPEFPASPCNLDGIHETSARLLFMA
                     VKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASSSSQG
                     RLALASAEMRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPDHVEALQDQS
                     QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDM
                     FKN"
ORIGIN      
        1 atcatacact gtgcccagcg aagaggatca tacactgtgt ccagcgccgt gctgggagaa
       61 gtctggactc agagccaagg tggtgagaaa gctccagaag gaggaaacgc tcctaacttg
      121 caaggggagg gaagtagagg acagacagac agaaatggat acataaactg ggtccagcaa
      181 cttctagcag gcaggcaacc cttgggacca tctgtatcca atgagctcta cagtgtctgc
      241 ctccgttgtg cccatggctg tgacggcctc caagaaggag tctccaggta gatggggcct
      301 cggagaggat ccgacaggtg tgggtccctc gctccagtgc cgagtgtgtg gggacagcag
      361 cagtgggaag cactatggca tctatgcctg caatggctgc agcggcttct tcaagaggag
      421 tgtgagacgg aggctcatct acaggtgcca ggtaggggca ggaatgtgcc cagtggataa
      481 ggcccatcga aaccagtgcc aggcctgccg gctgaagaag tgcttacaag caggcatgaa
      541 ccaagatgct gtacagaatg agcgccaacc tcgaagcctg gctcaggtcc acctggagag
      601 catggaacca ggcagtgatc cccgaccaga accggtggtg gcctctcctg ccttggcagg
      661 gcccagtccc cggggcccca catctgtatc tgcagccaga gccatgggtc accactttat
      721 ggccagcctc atctctgctg agacatgtgc taagctggag ccagaggacg ccgaagagaa
      781 tattgacgtc accagcaatg accccgaatt ccccgcatcc ccctgcaatc tggatggcat
      841 ccatgagaca tcagctcgcc tgctcttcat ggccgtcaaa tgggccaaaa acttgcctgt
      901 gttctccaac ctgcctttcc gggaccaggt gatcttgctg gaagaggcat ggaatgagct
      961 tttccttctt ggagccattc agtggtctct gcccctggac agctgcccac tgctggcacc
     1021 gcccgaggcc tccagcagct ctcaaggcag actggccttg gccagtgcag agatgcgctt
     1081 cctgcaggaa actatctccc gcttccgtgc tctggcagtg gaccccacag agtttgcctg
     1141 cctgaaggcc ctggtcctct tcaaacctga aacacgaggt ctgaaggatc ctgatcatgt
     1201 ggaggctttg caggaccagt cccaggtgat gctaagccag cacagcaagg ctcaccaccc
     1261 cagtcagcct gtgaggtttg ggaaattgct tctcctgctc ccatccttga ggttcatcac
     1321 agctgagcgc atcgagctcc tcttcttccg aaagaccata gggaacactc caatggagaa
     1381 gctgctgtgt gacatgttca aaaactagtg ggagtgccaa gggtacaggc tcctgggcaa
     1441 cacatcttcg aagctaaata ttttcctgcc tttctcatcc agtaattcca catgcaggta
     1501 tttgtacctt gcagaaattt ctcccaaaat atattattgg aaagtcatag ctgtcttaat
     1561 attaatgccc taactctgtt tggacagtag aatgcatgga tgtgctgtta cagtcatagg
     1621 agaaacagct gtggcaaaca taaaaataaa aatgaacagg ggtccaggag acagggagac
     1681 attttattgc ctagaagttg aacaaaagcc aggcatgtat atcccgtgtt caagaccagg
     1741 ggcggcgagg ggaagggagg aaggtgggaa tgcaaagaaa aggaaatgag aaaagaaaaa
     1801 tccagaataa accgatagag agaaagccag agtcagctca gggtgggggt ggggaatcgg
     1861 aagagggaaa atggcctcct gctctaggaa tgccctttat ttggttcgga tgataacttg
     1921 acagtcatta aaactcattg agcacttaaa a
//
