LOCUS       XM_039108271            7595 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor subfamily 2, group C,
            member 2 (Nr2c2), transcript variant X7, mRNA.
ACCESSION   XM_039108271
VERSION     XM_039108271.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7595
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7595
                     /gene="Nr2c2"
                     /gene_synonym="Tr4"
                     /note="nuclear receptor subfamily 2, group C, member 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 53 ESTs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:50659"
                     /db_xref="RGD:3201"
     CDS             442..2232
                     /gene="Nr2c2"
                     /gene_synonym="Tr4"
                     /codon_start=1
                     /product="nuclear receptor subfamily 2 group C member 2
                     isoform X2"
                     /protein_id="XP_038964199.1"
                     /db_xref="GeneID:50659"
                     /db_xref="RGD:3201"
                     /translation="MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDAS
                     GSSKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERL
                     LGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCI
                     INKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLR
                     SPLIATPTFVADKDGSRQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGT
                     LANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADG
                     IDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASR
                     LLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNH
                     LQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGL
                     TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGL
                     IGNVSIDSIIPYILKMETAEYNGQITGASL"
ORIGIN      
        1 tgcaaatgta atgttgcaag tgttagtttt ttcttcttac tgtggtgctg gggacggccc
       61 tgccattgag taacatccct agtcccaaaa tggtgaattg gaaaaatata aagaaccaac
      121 tggagtggaa agcttatgag cagttgatgg ctgaagctgc ttgggaggta gaaaaccaac
      181 attgacatca agaattccag gaattcaaga gatggttcag gaagtgggca aggcctataa
      241 agctgtgaca gtgaagtaat ggtggtagca aaagaaaggt tctctaatga tcttgcttca
      301 ccatggctac aaatatggag gggctggttc agcacagagt ggggacccag caggtggctg
      361 aggtacccag gtgaccactc agcacgttga tcctcgcctt tggtaccacg tacacagacc
      421 tctcggccgg aatctccagg gatgaccagc ccctccccgc gcatccagat aatttccacc
      481 gactctgcgg tagcctcacc tcagcgcatt cagattgtaa cagaccagca gacaggacaa
      541 aagatccaga tagtcaccgc agtggacgcc tctggatcct ctaaacagca gttcatccta
      601 accagcccag atggagctgg aactgggaag gtgatcctgg cttctccgga gacatccagt
      661 gccaagcagc tcatattcac cacctcagac aaccttgtcc ctggcaggat ccagatcgtc
      721 acggattctg cttctgtgga gcgattgctg gggaaggcag acgtccagcg gccccaggtg
      781 gtggagtact gtgtggtctg tggtgacaaa gcctctggcc gacactatgg ggctgtcagt
      841 tgtgaaggtt gcaaaggttt cttcaaaagg agtgtgagga agaatctgac ctatagctgt
      901 cgtagcagcc aagactgcat catcaacaag caccaccgca accgctgcca gttctgccgg
      961 ctgaagaagt gcctggagat gggcatgaag atggagtctg tacagagtga acggaagccc
     1021 tttgatgtgc aacgggagaa accaagcaat tgtgctgctt ccactgagaa gatctatatc
     1081 cggaaagacc tgagaagtcc tctgatagcc actcccacat ttgtggcaga caaagatgga
     1141 tcaagacaga ctggtcttct tgatccaggg atgcttgtga acatccaaca gcctttgata
     1201 cgtgaggatg gtacagttct tttggccacg gattccaagg ctgaaacaag ccaaggagct
     1261 ctaggtacac tggcaaatgt agtgacctct ctggccaacc tgagtgaatc tttgaacaat
     1321 ggtgatgctt cagaaatgca gccagaggac cagtctgcaa gtgaaattac acgggcattt
     1381 gacaccctag cgaaagcact taataccaca gatagtgctt cacctccaag cctggcagat
     1441 gggatagatg ctagtggagg agggagtatc catgtcatca gcagagatca gtcaacaccc
     1501 atcattgaag tcgaaggccc tctcctttca gacacacatg tcacatttaa gcttacaatg
     1561 cctagtccta tgccagagta cctcaatgta cattacatct gcgagtctgc atcccgcctg
     1621 cttttcctct ccatgcactg ggcaaggtca atcccagcct tccaggcact tggacaggac
     1681 tgcaatacca gcctggtacg ggcctgctgg aatgagctct tcactcttgg cctggcccag
     1741 tgtgcccagg tcatgagtct ctccaccatc ctggcagcca ttgtcaacca cttacagaac
     1801 agcatccagg aagataagct ttctggtgac cggataaagc aagtcatgga gcacatctgg
     1861 aagctgcagg agttctgtaa cagcatggca aaactggata tagacggcta tgagtacgca
     1921 taccttaaag ctatagttct ctttagtccc gatcatccag gtttgacagg cacaagccag
     1981 attgagaaat ttcaggagaa ggcacagatg gaattacaag actatgtgca gaaaacctac
     2041 tcagaagaca catacagatt ggccaggatt cttgtccgcc tgccagcact caggcttatg
     2101 agctccaata taacagaaga actttttttt actggtctca ttggcaatgt ttcaatagac
     2161 agcataattc cctacatcct caagatggag acagcagaat ataatggcca gatcaccgga
     2221 gccagtctat agtgcacagc caacagctgc caacagtggg atgcctccta ggactgtgca
     2281 ggtgcgaggg aagggaagtg tagcagtgtc ttggtgtgca caggtgtctc cagtgtgtta
     2341 gccacttctt cctgttcatc tcagacaata gcaactgaag atgagtagaa ctctttcctg
     2401 ccctaagaaa cgttttcaca ccttttggtg aagcagattt tggaacaatc ttttaattca
     2461 atttgtattt agaaattctc aaagggcaaa aaacaatact gaagttttat aatgtcagag
     2521 actagtatta aaagaaccta agaacagtat gtgtaaatac atttaaaaaa aaagtccttg
     2581 gaattaatag ctactaatta ccagggtaat gttagcactt tctaagcact tatcaaatct
     2641 taacatctta cctgtggaca gggcaaatgg aaaactgtgt ctcttttgtc aaaatgctaa
     2701 tgatttctgt gatcatcagg agacaatcgt tcacatttta taagcggcag cacttctagc
     2761 tgtgtgcaat ggtagtgctg cgctaaattc ctgtgtgggt tcctggcatt gtgtgcaggg
     2821 gacataactt gcagtgaccc aataagggct gctatgctag ccagagatgc ctgtcagggt
     2881 ccttacacac atggtccgga tccttgatgc atgtttgcag actcttccag aacctgggtt
     2941 ccactaatag tcagaattag attgcagctt atcagagtgc ctgtgatgag agtcatgtaa
     3001 ttcttccagt gattgaaagt atacctagat ccttttacca actcatagga actggagcct
     3061 ttgaccaaaa agtgcaagat gggtgatccg cacccttaga catgacctgt tgtccaggtt
     3121 gattgtggct tctgcagcaa gggttcctat tcctggtacg cttggagagg ggccagtatc
     3181 cgtgatcatt cagaacctgt agctgggtgg gagctgtgta tcctcattgc ctggtgaggg
     3241 agttactagc cttagattgc tgaacaaagg catcaagata aatactttct gatcttttaa
     3301 gtattagtga ttccagtgta ctgggccacc atgcttttca attttcccag gaatgtgcta
     3361 ggtccaacaa agctctctgg ggcatttgaa atatcagaag accaccttct ctttcaaaag
     3421 agaatccaaa aacaatcctc agtcggggca catcgtgcag gcctgtaacc ccagcacttg
     3481 ggaggctgag gcacaattat acattgaagg ccaatctgag aaacttaatg aggaaactcc
     3541 ttgtgagttt tcaggggtct ggggagttgg gtagtggtga cttaagtggt agtgtgcttg
     3601 cctagcatgc actaggtcct gggttccatc cccagtacca aaatcaaaaa gaaatcccca
     3661 aattccctca tgtcataatg accatagttc ccaacaagaa agagtacata atccagttcc
     3721 agggaagtag atctgactta aagctctttg cattcccgtg agcatgagac tggaaaaaaa
     3781 gtgggaggtt gggaaagata cttggtattt gcatttagat tagcaaaaat taaaaatacc
     3841 tcctgtaagg ttaagtttgt acctgtttat ggacaaatag agccatgggg ctcaaggcta
     3901 gataggctgt ttccttttga ggagttaatg acactttatt cactgaaagt gggatttcag
     3961 tgcagaagta gctctagctt ctaaattccc agctagattt ggaagccagt gttggagaat
     4021 agcagggatg gccagtatga aatgatggaa aggacataat tttgccagct taaatttttt
     4081 tttaggtata tattcaagat tgagatctgg acacctgtgt agttaaagtg agtctacttt
     4141 aatctctgta gaggtttcct gtagtacatc catacatctt atagctgcta gctttgcttc
     4201 ccttaggatt ttttagtgtg agcaccagtc atttctaggc cattcagggc ctgtacgtcc
     4261 tggctcccat tagatattta gaccacgttt ggataagaag taccaacctc taagatggca
     4321 ttgaaggggc caaaaaaatt tttttttaag atgtagaaaa gagttggtaa atctaatctg
     4381 gtcctttgta agttccatca ttagtaatgg ccaattgaca gggccacttt gggccaaact
     4441 cctccactgg atgtacagat ctttgtggcc ttacctttaa caattgtatc catacagtgt
     4501 tctcatcaac tgaaatcatt tcaaactttg agtgatgctc catcccatcg cttgtcagtg
     4561 aacctatgaa ggtcagccca tttcttagaa atagcccagc tctgtctggg cttcagcttt
     4621 cagggcgttc taccctggat ttatgaatct gtgatactcc acatctggta aagcagggct
     4681 gacctgtcta gacactcctc tcagggaggt ggacagacaa acgctaacct ggctacttta
     4741 tggggtaggc tggggtgggg agatacacac caacctggct aactgggctc ttttccataa
     4801 atatctcaaa ggttgatagt tccatgttaa aatttgggat agaataggac aggagatgta
     4861 gacagagacc agattcccta agcaggtcgt cttagttact cctcaaaatg ttatagtgtg
     4921 tcactgtcct tccagtttgc agagtgtgtt gaagagcttc tttactgcct agcctctttc
     4981 tgaggctgca gttggggttg tgccatcttg agtttttgaa gttcaagtga gtcacttatg
     5041 cccttggaat ggttttctag tttgtcagtg tcagaattag atgtggacgg tgttctgaga
     5101 tagtcacggc atcaaccagg gtggtcaatg tggccctcaa atggagcagt atcatccaca
     5161 ctacatagaa ctgtttcttg aaccggtaat actgctcatg tatgtctgct ggtcaatatc
     5221 cctgaaagct ggacctattg tctggaacct gatgtcatgg ggatctggaa gcctgctgct
     5281 gctttccagg ggctgttggt gctgctgaaa ctctaaatcc aggccttgaa aagcatcgcc
     5341 tgacagctgt ttttttccag ggggaaggtc ctgacaaaac agatgcccac ttcttccttt
     5401 gcctaactaa ctaccagtct ccagattatg tggttctttg caaaaagtct taactcttat
     5461 gtcaatttct aaagacaact ccaaaatgag atgaggttga cctaggtgtt ttgtacaagg
     5521 ttctggacct cctcattgag tgcctcccat cagtgtgtac tttctgtgca caacctgtcc
     5581 cttcagccac actgtgcatg tccagagtta caggcctaga tgactgaatg aatgtacatg
     5641 tgttcatatt atcttctttg tacagtgtat ataatgtgtg tacataggtg tacattatgt
     5701 atacagactt atagccacat attcaaactt ctatgttatc aagagttgat gctagcgttg
     5761 ctaatgtgaa tagatgtggg tgttacaagg ttcccttaac aggagcattg tgctggtgag
     5821 tttcttacca acttcatttt cctgaggcgg ggagctgcct ggaccaggtg acacttactc
     5881 ctgcataagg aagccttgag ccagaaaggt cctgatagga ggacagttct ctaagtttat
     5941 aagggcccag aagctggaag agatgttagc ctaatatcca aaactaagga taaacctgct
     6001 tttcacaaac cagtttagcc taactggaag gaacttggtg actgagaccc tcagtcttct
     6061 ccaaagcttg gagctttgtg tggctcagag atgggcattc cggagctgca gcagcctccc
     6121 ttgtttaccc tgggctctgt cagcaagact gagcaagact tgggtgctct ctgctggttt
     6181 aaaaaaaaaa aaagcctacc aaacattctc tgaaaacaat gcgatagcta acttgtggca
     6241 tataaaaacc acaattagca aattatccta acttaactac attctgtaaa agttgtattt
     6301 aatagtaaga aagctaaggt tgacattttc ctcatccacc aggtctattc tatttgtccc
     6361 ctctgattgg ggttttctag gctgagatgt ggacttggga gacagggccc agcttggccg
     6421 aggctgctag tggccacagt gagcaggcac ctggcttgga tgaagccagg ggcaaaagct
     6481 tgcctgaccc gcaggttgct ctgtgtttga agtaagttac tggagtgtta agactgcagt
     6541 ccttagtgcc ttcggtgaga tatgggtctt ttggcttcag cttcccactt gtgtccctgg
     6601 cctcaccctt tgtggttgtt caatcttgcc tgtgtcgttg cctgttgtga caatcacact
     6661 actaaaagtg gctttccaag taaaacacag ggaagcttgg ccgtccctaa atgaatcctt
     6721 ccattttctt tgggggctat tgtcttagca gcaacctaac agaaagctta aaagtggcct
     6781 aggaagggga aaaacataag acatttccaa tgctcagcaa tacgcacttt tagttaattt
     6841 tcagttttga tatatataca tggaatgtag gaaaatgctc aacattatct taagttttag
     6901 tgtttgggta acatttggta tagactgcac attaagaatg gcctttcttc aggaaagtac
     6961 cctcagttgt catcccaaca tccctattca ttcacggatg ccaatgctgc tgcacacaca
     7021 actcaagtgc tggaatattt ttctagtctg ttttcccaat taacttgtaa atcagtgttc
     7081 aactagtttt ataactgaaa agctgcacat ttttttcata gtaacaacta gtttgtacct
     7141 gtagtttgga tttctctgtt aagatataac cttatctgcc ccccacccac cccactccct
     7201 ttttggagaa catctactaa aggaaagtcc agtgtggaat tttcttggga ccggttgtgt
     7261 aactcccgcc cttcatacta tagaaaatgc catggatgcc gttacctttt gattccaggt
     7321 taaaaacctg cagagagctg ccattttgta cagctttttc tccccatgta aatgagctat
     7381 gtaatggcat ttaaaaccgc atgttctttt taaactgaat tttctatcta atcaatgtct
     7441 tcagtcctga aggagaatct gcattgttgt ctgtatagag agttgctgtg catggttacg
     7501 agcgcctttt actaaatgct gttcaatgtg gctttgttgt tgtggcttaa tactacctac
     7561 atgaggttta tactattaaa gtaagttaaa gacta
//
