LOCUS       XM_003749366            2944 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor subfamily 1, group H,
            member 5 (Nr1h5), mRNA.
ACCESSION   XM_003749366
VERSION     XM_003749366.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749366.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749366.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2944
                     /gene="Nr1h5"
                     /note="nuclear receptor subfamily 1, group H, member 5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 2 Proteins, and 76% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:690430"
                     /db_xref="RGD:1596077"
     CDS             210..1724
                     /gene="Nr1h5"
                     /codon_start=1
                     /product="bile acid receptor-like"
                     /protein_id="XP_003749414.1"
                     /db_xref="GeneID:690430"
                     /db_xref="RGD:1596077"
                     /translation="MANTYVTTSDGYYLAEPTQYYDILPEQLHYQLCDTDFQEPPYSQ
                     YSTAQFPPALQSPSLQSHFSTYGLEPQYSGGSWCGLDTRESSQSTYVVVHDDEDEFPG
                     TQRCRPTCSLRWKGQDELCMVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYSCKNG
                     GHCEMDMYMRRKCPECRLKKCKAVGMLAECLLTEIQCKSKRLRKSFKHRPTLSSAIQV
                     EDEGTDTKHVSSTSRSGKGAQDDMTLTAEERRLLNTIVTAHRKSMVPVGEISALLQEY
                     SNPELSFLRLSEASILHANWLMKFTKGLPGFENLTAEDQTALQKESKTEVMFLHVAQL
                     YGGRDSTSGSTVRPAKPSAGTLEVHNHRGDECVYSSENFFKEGYPSATLTGITREFIA
                     SLSYFYRRMRELNITDTEYALLTATTVLFSDRPYLKNKQHVENLQEPVLQLLFKYSKM
                     YHPEDPQHFAHLIGRLTELRTLSHSHSEILSTWKTKDPRLVMLFSEKWDLHSLY"
ORIGIN      
        1 gctggttttg aacttactgt gaagtcctgg ttgtttatac ctgagctctt cctgctcagt
       61 ctctacagtg ctgaaatctc atgcatgtgc caccatgcct agcttacact gtaatgtaat
      121 aaaatcgtaa gcagtctgtt ataatccccc ctcccaggtt ttattctgaa agcgtttagc
      181 attgttgaag gaaacaactg gaccagagaa tggcaaatac ctatgtcacc acgtctgatg
      241 ggtactacct cgctgaaccc acacagtatt atgatatttt gccagaacaa ctccattacc
      301 agctatgtga cacagatttc caagagccac cctacagtca atattctact gctcagttcc
      361 ctcctgcttt acagtccccg tctttacaaa gccatttcag cacatatggc ttggagccac
      421 agtacagtgg tggcagctgg tgcggactcg atacccgaga atctagccag tccacttatg
      481 tggttgtgca tgatgatgaa gatgaattcc ctgggacaca aaggtgcaga ccgacttgtt
      541 ctttacgctg gaagggacaa gatgagctct gcatggtctg tggtgataag gcgtcaggat
      601 atcactacaa tgcacttacc tgtgagggct gcaaaggttt tttccgacgt agcattacca
      661 aaaatgcagt gtattcctgc aagaacggcg gccactgtga aatggacatg tacatgcgca
      721 gaaagtgccc agagtgcaga ctgaaaaagt gtaaggcggt ggggatgttg gcggaatgtt
      781 tgctcacaga gatccaatgt aagtcaaaaa gacttcgcaa gagctttaag cacaggccga
      841 ccctgtcctc ggccatccaa gtggaagatg aaggaacaga cacgaaacac gtgtcatcca
      901 cctccagatc tggaaaaggg gctcaggacg acatgactct aactgcagag gaacgtcgcc
      961 ttctgaatac catagtgact gctcatcgaa agtccatggt tcctgtaggg gaaataagtg
     1021 cacttctgca ggagtattcc aaccccgaac taagtttttt gagactctca gaggcatcaa
     1081 tcctgcatgc gaattggcta atgaaattta ccaagggact cccaggattt gaaaatttaa
     1141 ctgctgagga tcagactgca ttacagaaag agtcaaaaac tgaagtgatg tttcttcatg
     1201 tagcccagct ttatggtggg agagactcaa cctctggaag tactgtgaga ccagcaaagc
     1261 cctcagctgg gacactggag gtgcataatc ataggggtga tgaatgtgtt tattcttcgg
     1321 aaaacttttt caaggaaggc tacccttcgg ccactctaac cggtattact agagaattca
     1381 ttgcttcact gtcttacttc tacagaagaa tgagagaact taatataaca gatactgaat
     1441 atgctctgct tacagcgact acagtgcttt tctcagatcg tccatacctt aaaaataagc
     1501 agcacgtaga aaacctacaa gaaccagtcc tgcaactttt gtttaagtat tcaaaaatgt
     1561 atcatccaga agacccacag cacttcgctc acctcatagg gaggcttact gagctgagga
     1621 ctctgagtca cagccactct gaaatcctta gcacttggaa aacaaaggac cccaggttgg
     1681 ttatgctatt ctctgagaaa tgggatttgc actcactcta ttgaaaattt agagtcaaca
     1741 ctaaaggttt gccttaaaat gtcaaaatca aaattggatg aatgatttga aaaatgtgaa
     1801 caaatccact gagttatcat acatcgccat ggagacctta agtgctcatc acgtggactt
     1861 ttcaactctt agatgaacac tccaggattc ttctcaagat tggatgcaaa ggaaaaaata
     1921 atggagctat gtggtggcac agtctctata cttgagagac agaggcaaga ggaccttaca
     1981 tttaaggcag tcctgggtga tgtaatgaga cctcatctca gaagaagaaa gagaagaatt
     2041 aatggccatt gttttttctc gagtcctcac ctgaagaaac tatttttttg tttagttaaa
     2101 atacataatg tatagatgtg aacaaaggtt agttatgatt aggataaggc agtttgtgtg
     2161 cctcaccaat taaggataca cgatggagta gaagccaatg cttagaacct ctgtttcatg
     2221 agtgactaaa gaagaacaaa accttttcaa attgtatctg ctttgtattt ttaataagta
     2281 tgtgctaatt gcacagaatg gtagtttcat tatgaaagtt tcatacatat atattaggta
     2341 tttccagcgt atttgccacc cacactgtgc tctccaccca ataccagtac ccttctcatc
     2401 cccctaatat ttccccttcc ccttccatgc cctaaagcac cagattcaca catgcaagaa
     2461 aatattcgat tccagtctga gtctggtttg tttcctttga catgaagata tcatctattt
     2521 ctcctgcaag tgacatattt tcattcctct taaggactgg attgtgtgtg tatatctgta
     2581 catagcacat tctatttatc catcatctgc tgacggcacc tgactggatt gtgtgtgtat
     2641 atctgtacat agcacattct atttatccat ccatctgctg atggcacctg actggattgt
     2701 gtatgtatat ctgtacatag cacattctat ttatccaatc catctgctga tggcatctag
     2761 tttgattctg taccttggcc actgtgaatt gaaagaccag gaaaaattca gaccccctag
     2821 caaacagagt agagtcaaaa atgtaggtca gccagttcag tgactctgtt ccaggaactg
     2881 gctgaccata aaagttagat taaaatctta agaacaatct tgagaaacag gaagcttctc
     2941 cttg
//
