LOCUS       XM_039082020            1191 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuroplastin (Nptn), transcript
            variant X4, mRNA.
ACCESSION   XM_039082020
VERSION     XM_039082020.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082020.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1191
                     /gene="Nptn"
                     /gene_synonym="Sdfr1; SDR-1"
                     /note="neuroplastin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 13 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:56064"
                     /db_xref="RGD:620296"
     CDS             166..1176
                     /gene="Nptn"
                     /gene_synonym="Sdfr1; SDR-1"
                     /codon_start=1
                     /product="neuroplastin isoform X2"
                     /protein_id="XP_038937948.1"
                     /db_xref="GeneID:56064"
                     /db_xref="RGD:620296"
                     /translation="MSGSSLPGALALSLLLVSGSLLPGPGAAQNAGFVKSPMSETKLT
                     GDAFELYCDVVGSPTPEIQWWYAEVNRAESFRQLWDGARKRRVTVNTAYGSNGVSVLR
                     ITRLTLEDSGTYECRASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRD
                     SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCV
                     YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG
                     VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVFS
                     KP"
ORIGIN      
        1 gcttggacgc tgcggcggta ggaggaggac ggggaaggac ggagctcggc cgctgctgcc
       61 tccctcgttc actccctcgc gctctcgccc gccccctccc tccctcccct cccttccccg
      121 gccccggccc cggcccattc gctgctcgct ctccggctag ggaggatgtc gggctcgtcg
      181 ctccccggcg ccctggccct ctcgctcttg ctggtctctg gctcgctcct cccagggcca
      241 ggcgctgctc agaacgctgg gtttgtcaag tcgcccatgt cagaaactaa gctcacaggg
      301 gacgcctttg agctgtactg tgatgtggtc gggagtccca cgccagagat ccagtggtgg
      361 tacgcagaag tcaaccgggc agagtctttc agacagctgt gggacggtgc tcggaagcgc
      421 cgtgtcaccg taaacaccgc ctacgggtca aacggcgtga gtgtgctgag aataacccgg
      481 ctcaccttgg aggactctgg gacttacgag tgcagggcaa gcaacgaccc caaacggaat
      541 gacttgaggc aaaacccttc cataacatgg attcgagccc aggccaccat aagcgtcctt
      601 cagaaaccaa gaattgtcac cagcgaagag gtcattattc gagacagcct ccttcctgtc
      661 accctgcagt gtaacctcac ttccagctct cacaccctta tgtacagcta ctggacaaag
      721 aatggggtag aactcactgc cacccgtaag aatgccagca acatggaata caggatcaat
      781 aagccaagag ctgaggattc aggcgaatac cactgtgtat atcattttgt cagcgctcct
      841 aaagcaaatg ccaccattga agtgaaagct gctcctgaca tcactggcca taaacgcagt
      901 gaaaacaaaa atgaagggca ggatgctatg atgtattgca agtctgttgg ctacccccac
      961 ccggaatgga tgtggcgcaa gaaggagaat ggtgtgtttg aggagatttc caatagctct
     1021 ggtcgcttct tcatcatcaa caaggagaat tacactgaat tgaatattgt gaatctccaa
     1081 atcacagaag atcctggaga gtatgaatgt aatgccacca actccattgg ctctgcctcc
     1141 gtttccacag tcctcagggt gttctccaaa ccctagacct tgtccttcag g
//
