LOCUS       XM_039103854            4665 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nephronectin (Npnt), transcript
            variant X3, mRNA.
ACCESSION   XM_039103854
VERSION     XM_039103854.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103854.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4665
                     /gene="Npnt"
                     /note="nephronectin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 ESTs, 9 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 70 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:686753"
                     /db_xref="RGD:1593709"
     CDS             261..1988
                     /gene="Npnt"
                     /codon_start=1
                     /product="nephronectin isoform X3"
                     /protein_id="XP_038959782.1"
                     /db_xref="GeneID:686753"
                     /db_xref="RGD:1593709"
                     /translation="MAVLLVAVLASSLYLQVAADFDGRWPRQIVSSIGLCRYGGRIDC
                     CWGWARQSWGQCQPFYVLRQRLARIRCQLKAVCQPQCKHGECVGPNKCKCHPGFAGKT
                     CNQDLNECGLKPRPCKHRCMNTFGSYKCYCLNGYMLMPDGSCSSALSCSMANCQYGCD
                     VIKGQIRCQCPSPGLQLAPDGRTCVDIDECATGRVSCPRFRQCVNTFGSYICKCHTGF
                     DLMYIGGKYQCHDIDECSLGQHQCSSYARCYNIHGSYKCQCKDGYEGDGLNCVYIPKV
                     MIEPSGPIHMPERNGTILKGDGGYANRIPDAGSTRWPLKTPYIPPPVITNRPTSKPTA
                     RPTPNPTPQPTPPPPPPLPTELRTTPLPPTPERPATSPTTVAPATQVVTVDNRIQTDP
                     QKPRGDVFIPRQPSNDLFEIFEIERGVSADEEAKDDPGILIHSCNFDHGLCGWIREKD
                     SDLHWEPTRDPAGGQYLTVSAAKAPGGKAARLVLPLGHLMHSGDLCLSFRHKVTGLHS
                     GALQVFVRKHGTHGSALWGRNGGHGWRQTQITLRGADVKSVIFKGEKRRGHTGEIGLD
                     DVSLKRGRC"
ORIGIN      
        1 gcagggaggg cggcgggcgg cgcggcgcgt ccctcccgcc tcgcccctcc ccgcgggcgg
       61 cgcggctccc gccgcagcgc ctccccttgc ctggagggag ccggaggggc tctgccagcc
      121 agccgcagac ttgcccggct gcgcgccgcg cccagtgcgt cccagcagcc gcgggtgccg
      181 cgccgaaggc ggccgagaga tcccgggacg cgcagcttcc cgcaaccccc cccagcgccc
      241 tggcgtcctg gtcggccggc atggctgtgc tcctagtggc ggtgctagcg tcctcgctct
      301 acctgcaggt ggctgccgac ttcgacggga ggtggcccag gcaaatagta tcttccattg
      361 gcctatgtcg ctatggtggc aggattgact gctgctgggg ctgggctcgc cagtcctggg
      421 gacagtgtca acctttctac gtcttaaggc agagactagc aaggataagg tgccagctca
      481 aagctgtgtg ccaaccacag tgcaaacacg gagagtgcgt cgggccaaac aagtgcaaat
      541 gtcaccctgg atttgctggg aaaacctgca accaagattt aaacgagtgt ggcctgaagc
      601 ctcggccctg caagcacagg tgcatgaaca ccttcggcag ctacaagtgc tactgtctca
      661 acggatacat gctgatgccg gacgggtcct gctcaagtgc tctctcgtgt tccatggcaa
      721 actgtcagta tggctgtgat gtgatcaaag gccaaatccg atgccaatgt ccttcccctg
      781 gcctgcagct agctcctgat gggaggacct gtgtggatat cgacgagtgt gcgactggaa
      841 gagtctcctg cccccggttt aggcagtgcg tcaacacgtt tgggagctac atctgcaagt
      901 gtcacactgg tttcgacctc atgtacattg gaggcaaata tcaatgtcac gacattgacg
      961 agtgctccct tggacaacac cagtgcagca gctatgctcg atgctacaac atacatggct
     1021 cctacaagtg ccaatgtaaa gatggatatg agggggacgg actgaactgt gtgtatatcc
     1081 cgaaagtcat gattgaacct tcaggtccaa ttcatatgcc agagagaaat ggtacaatct
     1141 taaagggtga tggaggatac gctaatagga ttcctgatgc tggaagtact aggtggcccc
     1201 tgaagacacc atatattcct cctcctgtca ttaccaacag gcccacctcc aagccaacag
     1261 caagacctac accaaaccca acaccacagc ctactccacc acccccgcca cccctcccaa
     1321 cagagctcag aacaacccca ctaccaccaa ccccagaaag gccagccacc agccccacca
     1381 ctgtggcacc tgctacacaa gtagtcaccg tcgacaacag gatacagacg gatccccaga
     1441 aacccagagg agatgtgttc attccgaggc agccttcgaa tgacctgttt gaaatatttg
     1501 aaatcgaaag aggagtcagc gctgatgagg aagcgaagga cgacccaggc attctcatac
     1561 acagctgtaa ttttgaccat ggactttgtg gatggatcag agaaaaggat agcgacttgc
     1621 actgggagcc aaccagggac ccagcaggtg gacagtatct cacagtgtct gcagccaaag
     1681 ccccgggggg aaaggctgcc cgcttggtgt tacctctcgg ccacctcatg cattcagggg
     1741 acctgtgcct gtcctttagg cacaaggtga ctgggctgca ctcgggcgcc ctgcaggtgt
     1801 ttgtgagaaa acatggtacc cacggatcag ccctgtgggg aagaaatggt ggccatggct
     1861 ggaggcaaac ccagatcacc ttgcgagggg ctgacgtcaa aagcgtcatc ttcaaaggtg
     1921 aaaaaaggcg tggtcacacg ggggagattg gattggatga tgtgagcttg aaaagaggtc
     1981 gctgctgaga agaccattgg cagcgcccca gctcgcagtg aatttgtcgc tttcccttgt
     2041 ttcccaatgc ttgccttctc atctccctct gatcaggccc agggcaggag tggatcagga
     2101 ggaaggctgc ttggtgactc aggtcttggt ggcctgtttt tgtgcaatcc cagtgaccgg
     2161 tgacactctc gaagttcagg agcatctgga gacacctcca ggcccctctg gggtggtacc
     2221 ttctacctgt gtcttcttta ggaaggactt tggtgtgtgt gacccgtgcc atccttcatc
     2281 gggattacag agtgggcctg ctagccaatt acgggagacg tttcattcag tgcaaatgct
     2341 attctgcgat ctgtccagtg ttgtaccatg agtagtattg acttggctta cagtacgatg
     2401 tgcagcgtgc ttgtgaaatt agtgtaccct tttcacttaa gttacttctg gcctgacctc
     2461 aactctgact tttactgcca tacacttttt aacggaaggt gcacaacata ttaagataca
     2521 tttattcttg taaactgtgt ctttctatta aagacagtta tatagggtgg tcatggaatt
     2581 tctgattagt agtactgtgt ttgtgtaaat gtgctattaa tataagtatt tacgtgttcc
     2641 taaatattca cagactctag ttgcaaggtc aaaggcagct tatgatcccc tgagttaaaa
     2701 aataaatggt gacctgtcat ctatgacctt aaactggcag caagaaaact agcagaggtg
     2761 tgcaactgtc tggtagtgga gtaatggctt tctttctatg tccttgagct tgatctatgc
     2821 agaagagagt agaccattaa gggaagagag gacctgcagt taatatataa aacccctata
     2881 aaccaacagc ttttaccatt gttactcacc tccattggta agaagctttg taaagatact
     2941 gtgtgggggg agtggacgac taggggaagg tccatgagac aggagtttct aatgagcttt
     3001 aaattggcaa ggtttccacg agtgtagctc acgatgttac ctgaggctgg gatgggaagc
     3061 cggtctgtgc actgaggcga tgcacgcaat gctggaagga cactcacgca ctaaagaaca
     3121 agattggaat tttaatatcc acagagctcc aactgcgtct cctccctgtc agacctctct
     3181 gtattaaaaa cgcataactt taacgagtca actttctcct tacagctctc tcatttctga
     3241 ttaagtaatc gaaatatttt tctgctgtct ttgccaggag acatacagat gattaaaggg
     3301 ttggaaaaaa agatctatgg tgaaaagcta aaggaactgg gaatgttccg cctggagaag
     3361 agaagactga ggggcagacc atgggtgctc ttccaggctg cgaacggttg gcaccgagag
     3421 cttggagagc agccgttctc catgtgtact gagaatagga ccagaggaaa cagggttagg
     3481 gtagagtgtg agggggcatt tcctggcagg gacagttgct gagcccaatc ctttacaaaa
     3541 aacaagtgtg agtcatattt gttctctctc tctctctctc tctctctctc tctctctctc
     3601 tctctctctc tctctccctg tctctccctc agtctctccg tctctctctc ttccttccct
     3661 ttacttatat ctccatctct ctccccccct cactgttttc ttcttttcct ctccatcttc
     3721 tctctccctt ccctccattg aaacaaaact acataaaatt ttatgtattt aaggtgcact
     3781 tatttcaagg taaattaccg aattgtggga tctagaagac gctttggtcc tcacagttgt
     3841 ccataacaag ggcaatcttc agaacgaaac taagtggtct gggctgagct ctaagttagg
     3901 cttttggctc ttgacctcct gctgggaagg gttcaaaagg tcgagctcac taaaatgctc
     3961 ttcactcaac agccaaccta gcagtattaa aagaacaaat ccccaaatta tttactcctg
     4021 gagaggttgt gtcacacagg tgctgtcctc tctcactgat gtcctaatat ggcggtgcta
     4081 gtgttttatt ccagggtaag gtgcaacccc ccatggtttg ttgagtaggt gcttagactt
     4141 gttcttcaga gatcccaaga aacatgactg agagattttg tctggtgcat tgcctctggt
     4201 ttgcattgac aagttaacat ggctactgag gtcgtgtcaa ccacagcacc gttagccctc
     4261 cccgtcacct cttcccgtgg ctcactttct cactgggagc cttccaagtt ccacaagccg
     4321 gtaatgcttt ctgaacaggt ccaagggact tggccgttta gctcaataga ggcagggttg
     4381 gagtttctga tgtagaagaa cacctaaaat gctcttaggt ccattttttc atgatccatt
     4441 tcctgtttgg tcatgtaact gcacagcaga agaagaaagg ggaaagtaat tgagaagttc
     4501 acacttaggt gccaataaga cattgcactg gtggaagaag ttatccaaag tactgtagaa
     4561 catcttgttt attatttaat gttttctaaa gtgaaaaatg tttgtggttt tcaaaatgga
     4621 cgaacaaaag caatctttgt aaataaaaca ctgttaatag tgcta
//
