LOCUS       XM_039104713            1549 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neural proliferation, differentiation
            and control, 1 (Npdc1), transcript variant X6, mRNA.
ACCESSION   XM_039104713
VERSION     XM_039104713.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104713.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1549
                     /gene="Npdc1"
                     /note="neural proliferation, differentiation and control,
                     1; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 202 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:296562"
                     /db_xref="RGD:1303156"
     CDS             407..1252
                     /gene="Npdc1"
                     /codon_start=1
                     /product="neural proliferation differentiation and control
                     protein 1 isoform X6"
                     /protein_id="XP_038960641.1"
                     /db_xref="GeneID:296562"
                     /db_xref="RGD:1303156"
                     /translation="MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPGEGLPQP
                     RLEEEIDSLARELALKEKEAGHPRLTAQPLPEASQKLLEPATLGFSQWGQQLEPGLPS
                     THGTSSPTPHTSLSARASSGPVQMSPLEPQGRGNGLALVLILAFCLASTAALAVAALC
                     WCRLQREIRLTQKADYTATAKGPTSPTTPRISPGDERLAHSAEMYHYQHQRQQMLCLE
                     RHKDPPKELESASSDEENEDGDFTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHS
                     SPPLQ"
ORIGIN      
        1 tcggaccact aaaaaggcgt gaatcctggg acgcccactg ctagtcaatc ccaagccaga
       61 tttcttggta atgaggcaaa ctgctgtaga gactagagga cgggagacac tcagccgcct
      121 ttagaaaggg ggccccatca ggatgtagag ggaggggggc tccgactaga agagatgtcc
      181 cgcccccgca ggtagagcgc gcaggcgcac ttcggacact tttctctggc cgccgcgcct
      241 ccatcccatc ccggatccat tgccgcaacg tcagcgccgc cgcctcctct tttcctcttc
      301 ctcctccgcc cctctcgctt cccggcttct ccagtcgcgg ttcccggagt gggtaccgag
      361 cccggggccg tggggtgcca tgctgcccgg gtggcggcgc tgaagcatgg cgacgcccgt
      421 ccctccgcct tccccgcggc acctgcggct gctgcggctg ctgctctccg gccttattct
      481 gggagcggcc ctgaatggtg ccaccgcccg ccgcccgggg gagggcctgc cccagcccag
      541 actggaagag gagatcgatt ctctggcccg ggagctggca ctgaaggaga aggaggctgg
      601 gcacccaagg ctcacagcac agcccttgcc tgaggcttcc cagaagctcc tggaacctgc
      661 taccctggga ttctcacagt ggggtcaaca actggagcct ggcctcccct ctactcacgg
      721 aacctcttcg cccacacccc acacctcctt gagcgcccgg gcatcctctg ggcctgtgca
      781 gatgtccccg ctggagcctc aaggccgtgg aaatggcctc gcccttgtac tgatcctggc
      841 gttctgcttg gcaagcacag ctgcactggc tgtggcagcc ctctgctggt gtaggcttca
      901 gcgagagatc cgcctgactc agaaggctga ctacactgcc acagccaagg ggcccacttc
      961 accaacaaca ccacgaatct cgcccgggga cgagcgtctg gcgcatagcg cagagatgta
     1021 tcattatcag caccagagac agcagatgct gtgcctggag cggcataagg accctccaaa
     1081 ggaactggag tcagcctcct ccgatgagga gaatgaagat ggtgacttca ctgtgtacga
     1141 gtgcccaggc ctggcgccaa caggggagat ggaggtgcgc aatccactgt ttgaccattc
     1201 cacgctgtca gcaccagtgc ctggtcccca ttcctcacca ccactgcagt gactcctagg
     1261 ctgatgccca cagcccaccg gtggggacaa gcaagtcctg gtgttcccca tggaaaagaa
     1321 cagcattgtg accctctgca tgcttttggc aggagagagg cgccaacccc tgggctccct
     1381 tgccagggag attctctgcc ttatgtggga gatccagcat ctgcttgcat attctctgtc
     1441 tggtctgaac cctcaaactg gagatgcaag tccaggaacc ctagagccga ggcatggata
     1501 gagagttctg gagataaaag ccaattaaag tctttttcaa acctgtgaa
//
