LOCUS       XM_039081460            4299 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear protein, co-activator of
            histone transcription (Npat), transcript variant X3, mRNA.
ACCESSION   XM_039081460
VERSION     XM_039081460.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081460.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4299
                     /gene="Npat"
                     /note="nuclear protein, co-activator of histone
                     transcription; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 41 ESTs, 3 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:315666"
                     /db_xref="RGD:1311947"
     CDS             148..2781
                     /gene="Npat"
                     /codon_start=1
                     /product="protein NPAT isoform X3"
                     /protein_id="XP_038937388.1"
                     /db_xref="GeneID:315666"
                     /db_xref="RGD:1311947"
                     /translation="MLLPSDVARLVLGYLQQENLTSTCQTFILESSNLKEYAEHCTDE
                     GFIPACLLSLFGKNLTTILNEYVAMKAKETSNDVPTIMSSLWKKLDHTLSQIRSMQSS
                     PGFAAHQRARTRNGIAEIKRQRWLASQAAPVSSELLVLPYASGQFTTSPLAATQTIKP
                     TGQISTPVRSNIVVVNHSQTQNTVTNTAGESLNIIPGPQERKTQTSLMSPGRRKSESQ
                     KKSLPSSGAHSSRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDS
                     NIAQVPKQTESSLTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFD
                     YGKTKNNKNISQSVSSQSVETNPNIVIPEETNLTIKSSFETEESGSAIIIASPVQPVL
                     QGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQKAQGLRNK
                     PITGKQVNNLTSLSSLSEACHTQSRTEASDKNTATELGKKMEDTTIPLSAERVAPPSR
                     PFESHRRVLCFDSTVSSVANTQGPLYKVTSQNKEKKETSFPRLDSPILSSTLKSPTNN
                     AIKREREKTVPKILSKSETASSRHTTVKEVQSEKKVSPIETTLESFHKATANKENELC
                     SDGERPKNPDTSKLPGGQQNGSLKNEKAMASLQELTRKQATPSNNKNATTVSGTVKDQ
                     KQEQSKPAGSLTGLETLQDVPLHNPANRTADSDLPGPRTTGAGAGEKHKEEPTDSMKA
                     PASRRCGEEGSVPRAMIPAVTADLPACSPASETGSENSVSMAAHTLMILSRAAIARTT
                     ATPLKDNTQQFRTSSRSTTKKRKIEELDECERNSRTSSKNLANSSVPMKKKKIKKKKL
                     PSSFPAGMDVDKFLLSLHYDE"
ORIGIN      
        1 ttggagtggc acgaaagagg cgggacaaat tgccgcgggt tcagcaccgc cagtggaacc
       61 gggagatgcg gcggcgccgg gactgtcgcc gtgtttgctc tgagttgagt ctcgtccctt
      121 caggcggctc cctgtgcagc tcggatcatg ctgttaccct cggatgtagc caggctggta
      181 ttgggttact tacaacaaga aaacctcaca tctacttgcc agacttttat tttggaaagt
      241 tcaaatttaa aagaatatgc agaacactgt actgatgaag gttttattcc agcctgctta
      301 ctgtccttat ttggaaaaaa cttgacaaca attttaaatg agtatgtagc tatgaaagca
      361 aaagaaacat caaatgatgt cccaacaata atgtcatctc tgtggaagaa gctggaccac
      421 acgctctctc agatcaggag catgcagagt tctccagggt ttgctgccca tcagagagct
      481 cgaacaagaa atggaattgc agaaatcaag cggcagcgat ggctggcatc tcaagcagct
      541 cccgttagct cagagttgct ggttttacct tacgcttcag gacagttcac cacttctcct
      601 ttggcagcca cacaaactat caaaccaact ggacagattt caactccagt gaggtcaaat
      661 attgtggtgg tcaaccattc acagacacaa aatactgtaa ctaatacagc tggagaatct
      721 ttgaatatca ttcctggtcc tcaggaaagg aaaactcaaa ccagtttaat gtctcctggt
      781 agacgtaaaa gtgaatcaca aaagaagagt ctcccgtcat ctggagcaca ttcatcaagg
      841 aatcttcagg atccaaatgc atttgcagta gaaaaacaaa tggtcattga aaatgcaaga
      901 gagaaaatat taagcaacaa atctcttcaa gaaaaactag cagaaaacat aaataagttt
      961 ttgactagtg atagtaatat tgctcaagta cctaaacaga cagaaagcag cctgacagag
     1021 ccagaaacgt caattgatga actcctagga cttccgagtg aaatccacat gtctgaagaa
     1081 gcaatacaag atatactgga gcagacagaa tcagacccag cctttcaggc actctttgat
     1141 ctatttgact atggtaaaac aaagaacaat aaaaacatat cacaaagtgt ctctagtcaa
     1201 tcagtggaga ctaatcctaa tatagtcata cctgaagaaa ctaatctaac aattaaaagt
     1261 tcttttgaaa cagaagaatc aggatctgcc atcataattg cttctccagt acagcctgtt
     1321 cttcaaggaa tggtggggat gatacctgtg tctgtagttg gacagaatgg aaatacattc
     1381 tccactcctc ctcagcaggt ccttcatatg cctttagcag cacctgtttg taatagaagt
     1441 atcactcaat tccccattcc tcaaaaatcc cagaaggctc agggactcag aaacaagcct
     1501 attacaggaa aacaggtaaa taatttgaca agcttgtcca gtctttcaga agcatgtcat
     1561 acacaaagta gaactgaagc ttctgataag aatacagcca ctgaacttgg gaaaaaaatg
     1621 gaagacacta caattcccct atcagcagag agggtagctc ctcccagcag gccatttgaa
     1681 agtcataggc gggtgctttg ttttgatagt actgtttctt ctgttgcaaa tacacagggg
     1741 ccactatata aagtgacctc ccaaaacaaa gaaaagaagg aaacatcttt tcctcgcctt
     1801 gactcaccca ttctgtcctc taccttaaaa tcacctacta ataatgccat caagagagag
     1861 agggaaaaaa ctgtgcccaa gattttatct aaatcagaaa ctgcctccag tcgacacacc
     1921 actgtgaaag aagtccagtc tgaaaagaaa gtttccccca tagaaacgac ccttgaatct
     1981 ttccataaag caacagcaaa caaggagaat gaactgtgca gtgatgggga aaggccgaag
     2041 aatccagaca cctcaaaact gcctggcggg cagcagaatg ggagcttgaa gaatgaaaaa
     2101 gccatggcct cactgcagga attgaccaga aaacaagcca caccctcaaa caataaaaat
     2161 gccactactg taagtgggac tgtgaaggat caaaaacaag agcagagtaa acctgccggc
     2221 tcgttaactg ggctagaaac tctgcaggat gttccactac acaacccagc aaataggact
     2281 gctgatagtg acttgccggg accccggacg actggcgcag gagcaggaga aaagcataaa
     2341 gaagagccta ctgacagtat gaaggcccct gctagtagac gctgtggtga ggaaggcagc
     2401 gtgcccagag caatgatccc agctgtcact gctgacttgc ctgcctgcag cccagccagt
     2461 gaaacgggca gcgaaaacag cgtgagcatg gctgcccaca cgctcatgat tctctctaga
     2521 gcagcaattg ctaggactac agcaactcct ctaaaagata acacgcagca atttagaaca
     2581 tcttcaagga gcactacgaa gaaacgaaaa attgaggaat tagatgagtg tgagaggaac
     2641 tcccgcactt ctagtaaaaa tcttgcaaat tcatcagtac caatgaaaaa gaagaaaatc
     2701 aagaaaaaga agctacctag ttcatttcca gcaggaatgg atgtggacaa gttcttgcta
     2761 tcactgcatt atgatgagtg aaggacaccc tgacatagag accagtagct atttaaaact
     2821 agtgtccttc agactgcgcg taggaaatgg gatagagaca gactgcaaac atgacctgca
     2881 ctttgactgt actgaggttt cactttatat ctaagtcatg ctgtttctga agcagcttcc
     2941 tagtttgtaa atagactttc atggaatatt tgtattttag acaaaaagaa catacgcaga
     3001 aatgtaagta aaccctgtct gcaaaactgt atagctgtga cactgtatat tgtacatgtg
     3061 tacattgtgt aaaatagagc ttaaatcaac ctaacgttcc cacactgtct tgattgactt
     3121 cctgtgatgc ccgaggctta ttcttctgga gtagtttctc atctcctttg gaggaagatg
     3181 atgattattc ttataaatta ccttcagcca atactagata agccactaag taaaaaataa
     3241 taatgatgac cacctcaact ggttagtaaa atatctaatc agaaaacaac agtttgatga
     3301 tttcccccta gagtcaatat tttatcaccc taaataaatt tcagtaaaat ctatatttct
     3361 gaagttttat actttattct gatcatctat cctctttgtt ttaaagagat ttttataaac
     3421 catttattaa gtgttctgat atttcactta caactttttg aaatttttta cagaacatta
     3481 agtggttaga ctattgagcc ataaaaattt gagttgtgta gtagtcgaga tttcttgatt
     3541 atatgtaaac tttccctaag cactgggaat acaaagaatt gcactaattc atagactttt
     3601 catatactag tgaccaatgc acattaattt aaatcttgta tgtaaaagct tatatggagg
     3661 attgtcttct ggtgtcttcg aaagtcatgt ccatcttaag atgtaaaaat gaaaatcata
     3721 gttatattgt aatttagttt accctcaaat gggatatgta aataactgtg tttatacata
     3781 acctatagaa cctcgcgttc tttaaagtgt tataaataat tactctcaaa aggtccttag
     3841 gggagtgaga ggtgccttct ctgttagact gactcataaa caacagtcaa gttgaaaagc
     3901 tggcttaaac tttaaaggaa tgacagaaat tatcattaat acttgaccga ttgtgcctag
     3961 atattgaagt gttttcttaa gttcttactg cttaaatatc agtatattaa ggtttttttc
     4021 tacgggtgta tattttatta aaaagtcact ttcttcaacc attttttgta ctgggccttt
     4081 aagaaataaa tccatccaac tgtaacaaca aaaaacgtct tcaatatata aattatgtct
     4141 ttttacttgc tagattttac tgtacagatt tatattttga gaaattttat atgactatga
     4201 tatataccta agggactaag catacagcta atgtttatat aactcagctt gggtctatcc
     4261 tacggttagg tttgaataaa tatattttca ttaacttta
//
