LOCUS       XM_008766266            7402 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear protein, co-activator of
            histone transcription (Npat), transcript variant X2, mRNA.
ACCESSION   XM_008766266
VERSION     XM_008766266.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008766266.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008766266.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7402
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7402
                     /gene="Npat"
                     /note="nuclear protein, co-activator of histone
                     transcription; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 42 ESTs, 2 long SRA reads, 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:315666"
                     /db_xref="RGD:1311947"
     CDS             1838..5884
                     /gene="Npat"
                     /codon_start=1
                     /product="protein NPAT isoform X2"
                     /protein_id="XP_008764488.2"
                     /db_xref="GeneID:315666"
                     /db_xref="RGD:1311947"
                     /translation="MKAKETSNDVPTIMSSLWKKLDHTLSQIRSMQSSPGFAAHQRAR
                     TRNGIAEIKRQRWLASQAAPVSSELLVLPYASGQFTTSPLAATQTIKPTGQISTPVRS
                     NIVVVNHSQTQNTVTNTAGESLNIIPGPQERKTQTSLMSPGRRKSESQKKSLPSSGAH
                     SSRNLQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDSNIAQVPKQTE
                     SSLTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNI
                     SQSVSSQSVETNPNIVIPEETNLTIKSSFETEESDGQSGQPPFCTSYQNEDVVLNDLK
                     SGNNHDVLPQESQGNFSQISANIQKTAVPAEQKCALDITFESVSNLSDFNQRGSATEC
                     DEHCSELYTSQMPTDAGAAVGEESSLSPDSLNQSQYQPDQPRVPVTSFVSLGGETNDK
                     NLILSGKNSQLLSQSTPLTGKPSKSQFCENSNNIIKVKTNSHASESPDSSDTHSSKDE
                     TNSKSPVAAQTQPDCQDNSPLQSRTSPVIIEGLGVNVTEKIEISIEETSPSDKQLPND
                     SASVDLNPMGSESEPLQSENTQEPPSVKDGDTIFLSLSGHNGCEEVALVPGEGNPVKN
                     NHSLSSESGGSVGVSAETQNTDGKASDPAEVDASSIVSLKIIISDDPFVSSDAELNSA
                     VSSISGENLPTIILSSKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKP
                     EEPTVNSTQNEDGIAFSANVAPCVPKDGGFIQLMPATSTAFGNSSNILIATCMTDPTA
                     LGPTVSQSNVVVLPGSSAPLTAQPPPQQLQTPPKSNSAFAVSQAVSPNFSQGSAIIIA
                     SPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSITQFPIPQKSQK
                     AQGLRNKPITGKQVNNLTSLSSLSEACHTQSRTEASDKNTATELGKKMEDTTIPLSAE
                     RVAPPSRPFESHRRVLCFDSTVSSVANTQGPLYKVTSQNKEKKETSFPRLDSPILSST
                     LKSPTNNAIKREREKTVPKILSKSETASSRHTTVKEVQSEKKVSPIETTLESFHKATA
                     NKENELCSDGERPKNPDTSKLPGGQQNGSLKNEKAMASLQELTRKQATPSNNKNATTV
                     SGTVKDQKQEQSKPAGSLTGLETLQDVPLHNPANRTADSDLPGPRTTGAGAGEKHKEE
                     PTDSMKAPASRRCGEEGSVPRAMIPAVTADLPACSPASETGSENSVSMAAHTLMILSR
                     AAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELDECERNSRTSSKNLANSSVPMKKK
                     KIKKKKLPSSFPAGMDVDKFLLSLHYDE"
ORIGIN      
        1 cggaaagact aggggctggg ggggagagtt gtcccgggtg gggaagcttt gaggagtggt
       61 ctgctcgcgt ccaagttcag gctagcggag aggcttggtc cctcggcggc ctcggacatt
      121 tgaagcttcc ttggtgtggg gatgtccctt ttcaccgtgc tgcgcgatgg gggcagccga
      181 agagagaagg aagctcggcg tggaacacct ggggcctgga ttccgaggca cagccaggcc
      241 cgctgggaca cctgaaggat tgtcgtctgt gtgatggacg gggctgtgtg tcccccccac
      301 cccaccccac cctttccctt gtcagagccg ggactgataa agggaaaagg gggagaaaac
      361 cccgcttccc cggccgccca gtgttgtgga ctttacgacg cccttaccca taacccgacc
      421 ttagcactag gaatttggga cacagggagg tctccacact tctggcccac cgtagaggct
      481 tgaaacgcca attgcatatt tcagaacggc agtgtgtcgt gttcttgagc agatatttag
      541 gaggtacgac aactgacttc tggctgcaca cgttctagcc ctcgttttcc tccatttttg
      601 aaaagggctt gttcatagac cactggtcgg tcggggaata ctgtctacga gaaagactgt
      661 tttcgttgtt tgtcctttga aataataaaa cggattgtac tgcatggatc aagagactct
      721 taggctcaaa actgaacagt gactttgaaa cattatttgc gacatcttta aaagaaaatg
      781 gtcagagtat gaggaatcct tccatagttt ccaaagccgt tacgaacatt tgctttgtgc
      841 cctatccaaa aaaataaaaa ttgcacgttt ggcaggacat atttaagagg ctctgaacgg
      901 tgaaacttaa acactaaaac taatgttttg aatgtttaat tttttttcta cttaatcaga
      961 cttgggtagt taacctaaat ttatacctgt gatttttaaa gttagctttc ttgtaattct
     1021 taaatttatt aggctcataa gaaaactgat gaaaagtaga cccacagtgt aaatattttt
     1081 tcccctgtac gtagtgtgta ggtaagaact gcgactttta gcagtctaat gatccaaata
     1141 aaattccttg atccaagcct caaaaatggc ttcttgaatt tggcagtatg aacattgtaa
     1201 aagtagataa ttaatatgag tttttttccg tttttttttt tcttcagatt ttatgggatg
     1261 tttaacagca acccagattt ctctccatta gataccagta ggatgtcatt cctagctgta
     1321 agaaaggggg tagggagggg ctttacacac ttttacacac tgtcagcata tcccctgaag
     1381 agaaagccct gccttgttaa aaccttaagg aaatgacagg atcttcctaa ttggaatagt
     1441 taggtttgtg tcccactaac acgctgtaac tttgtctctt aatgcctgga aactctcgtt
     1501 aaaaaatcat ctttgttatt cagattccgc tttcagtgcc ttgaattcca actcgcctcc
     1561 cattctgttt tggaattgtg atgtctttcc atatgctcta cttggaattc atgtatattc
     1621 ttttgcaaac attgctgaag catctcaaaa tggaatcact tttgagcttg gttacttaca
     1681 acaagaaaac ctcacatcta cttgccagac ttttattttg gaaagttcaa atttaaaaga
     1741 atatgcagaa cactgtactg atgaaggttt tattccagcc tgcttactgt ccttatttgg
     1801 aaaaaacttg acaacaattt taaatgagta tgtagctatg aaagcaaaag aaacatcaaa
     1861 tgatgtccca acaataatgt catctctgtg gaagaagctg gaccacacgc tctctcagat
     1921 caggagcatg cagagttctc cagggtttgc tgcccatcag agagctcgaa caagaaatgg
     1981 aattgcagaa atcaagcggc agcgatggct ggcatctcaa gcagctcccg ttagctcaga
     2041 gttgctggtt ttaccttacg cttcaggaca gttcaccact tctcctttgg cagccacaca
     2101 aactatcaaa ccaactggac agatttcaac tccagtgagg tcaaatattg tggtggtcaa
     2161 ccattcacag acacaaaata ctgtaactaa tacagctgga gaatctttga atatcattcc
     2221 tggtcctcag gaaaggaaaa ctcaaaccag tttaatgtct cctggtagac gtaaaagtga
     2281 atcacaaaag aagagtctcc cgtcatctgg agcacattca tcaaggaatc ttcaggatcc
     2341 aaatgcattt gcagtagaaa aacaaatggt cattgaaaat gcaagagaga aaatattaag
     2401 caacaaatct cttcaagaaa aactagcaga aaacataaat aagtttttga ctagtgatag
     2461 taatattgct caagtaccta aacagacaga aagcagcctg acagagccag aaacgtcaat
     2521 tgatgaactc ctaggacttc cgagtgaaat ccacatgtct gaagaagcaa tacaagatat
     2581 actggagcag acagaatcag acccagcctt tcaggcactc tttgatctat ttgactatgg
     2641 taaaacaaag aacaataaaa acatatcaca aagtgtctct agtcaatcag tggagactaa
     2701 tcctaatata gtcatacctg aagaaactaa tctaacaatt aaaagttctt ttgaaacaga
     2761 agaatcagat gggcaatctg gtcagcctcc attttgtaca tcctatcaaa acgaagatgt
     2821 agtgttaaat gatctgaaga gtggcaacaa ccatgacgtt cttccacagg agtcccaggg
     2881 aaacttctcc caaataagcg ctaacattca aaaaacagct gtacctgctg aacagaagtg
     2941 tgcccttgac attacctttg agtctgtgtc taacttaagt gattttaacc aaagaggaag
     3001 cgctactgaa tgtgatgaac attgttctga gttatacacc agtcagatgc ccactgacgc
     3061 tggagcggct gtgggtgaag agagttctct gtctccagat tcactgaacc agtctcagta
     3121 tcagcctgat cagccccgcg tgccagtcac ttcatttgta tctcttggtg gtgagaccaa
     3181 tgacaaaaac ttaattctct cggggaaaaa ttcccagctt ttgtcccaaa gtactccact
     3241 aactggaaag ccatctaaaa gtcaattttg tgaaaattct aataatataa taaaagtaaa
     3301 aactaattct catgcttctg agtcaccaga ttctagtgac actcacagca gtaaagatga
     3361 aactaacagt aaatcaccag ttgctgccca gacacaacca gattgccaag ataattctcc
     3421 actgcaaagc agaacatctc ctgtgattat tgaaggttta ggtgtaaatg tgactgaaaa
     3481 aatagaaatt agtattgaag aaacatcccc ttcagataaa cagctaccta atgattcagc
     3541 ttctgttgac ttaaatccta tgggaagcga gtcagagcca cttcagtctg agaacactca
     3601 agagcctcct tctgtgaaag atggagatac tatttttctc tctttgagtg gacataacgg
     3661 ctgtgaagaa gttgcactgg ttcctggaga aggtaatcct gtaaaaaata atcattcact
     3721 ttcttcagaa tctggtggtt cggtgggagt ctctgctgag acccaaaata ctgatggcaa
     3781 agctagcgac ccagcagagg tagatgcgtc aagcattgtc tctctcaaaa tcatcattag
     3841 tgatgaccca tttgtttcct cagatgcaga gcttaacagt gctgtgtcta gtatcagtgg
     3901 agaaaactta ccaacgataa ttctgtcttc taaatctcct gccaaaaatg cagaattcgt
     3961 tacatgccta tcttcagaag aaactgcaag tgctgttgta tctgttgaag taggtgattc
     4021 tggctccatg gagcagaacc ttttagtgct caaacctgag gaacccacgg taaacagcac
     4081 tcagaatgaa gatggcattg ctttttcagc caatgttgca ccatgtgttc ctaaggacgg
     4141 aggattcata caattgatgc ctgctacaag cacggcgttt ggcaattcaa gtaacattct
     4201 gatagctacc tgtatgactg acccaacagc cttgggacca actgtcagtc agtctaatgt
     4261 agtagtgttg cccgggagtt ctgcaccttt gactgcacag cctcctccac agcagttaca
     4321 gacgccacct aagtctaaca gtgcatttgc tgtcagccaa gccgtgtcac caaacttttc
     4381 acaaggatct gccatcataa ttgcttctcc agtacagcct gttcttcaag gaatggtggg
     4441 gatgatacct gtgtctgtag ttggacagaa tggaaataca ttctccactc ctcctcagca
     4501 ggtccttcat atgcctttag cagcacctgt ttgtaataga agtatcactc aattccccat
     4561 tcctcaaaaa tcccagaagg ctcagggact cagaaacaag cctattacag gaaaacaggt
     4621 aaataatttg acaagcttgt ccagtctttc agaagcatgt catacacaaa gtagaactga
     4681 agcttctgat aagaatacag ccactgaact tgggaaaaaa atggaagaca ctacaattcc
     4741 cctatcagca gagagggtag ctcctcccag caggccattt gaaagtcata ggcgggtgct
     4801 ttgttttgat agtactgttt cttctgttgc aaatacacag gggccactat ataaagtgac
     4861 ctcccaaaac aaagaaaaga aggaaacatc ttttcctcgc cttgactcac ccattctgtc
     4921 ctctacctta aaatcaccta ctaataatgc catcaagaga gagagggaaa aaactgtgcc
     4981 caagatttta tctaaatcag aaactgcctc cagtcgacac accactgtga aagaagtcca
     5041 gtctgaaaag aaagtttccc ccatagaaac gacccttgaa tctttccata aagcaacagc
     5101 aaacaaggag aatgaactgt gcagtgatgg ggaaaggccg aagaatccag acacctcaaa
     5161 actgcctggc gggcagcaga atgggagctt gaagaatgaa aaagccatgg cctcactgca
     5221 ggaattgacc agaaaacaag ccacaccctc aaacaataaa aatgccacta ctgtaagtgg
     5281 gactgtgaag gatcaaaaac aagagcagag taaacctgcc ggctcgttaa ctgggctaga
     5341 aactctgcag gatgttccac tacacaaccc agcaaatagg actgctgata gtgacttgcc
     5401 gggaccccgg acgactggcg caggagcagg agaaaagcat aaagaagagc ctactgacag
     5461 tatgaaggcc cctgctagta gacgctgtgg tgaggaaggc agcgtgccca gagcaatgat
     5521 cccagctgtc actgctgact tgcctgcctg cagcccagcc agtgaaacgg gcagcgaaaa
     5581 cagcgtgagc atggctgccc acacgctcat gattctctct agagcagcaa ttgctaggac
     5641 tacagcaact cctctaaaag ataacacgca gcaatttaga acatcttcaa ggagcactac
     5701 gaagaaacga aaaattgagg aattagatga gtgtgagagg aactcccgca cttctagtaa
     5761 aaatcttgca aattcatcag taccaatgaa aaagaagaaa atcaagaaaa agaagctacc
     5821 tagttcattt ccagcaggaa tggatgtgga caagttcttg ctatcactgc attatgatga
     5881 gtgaaggaca ccctgacata gagaccagta gctatttaaa actagtgtcc ttcagactgc
     5941 gcgtaggaaa tgggatagag acagactgca aacatgacct gcactttgac tgtactgagg
     6001 tttcacttta tatctaagtc atgctgtttc tgaagcagct tcctagtttg taaatagact
     6061 ttcatggaat atttgtattt tagacaaaaa gaacatacgc agaaatgtaa gtaaaccctg
     6121 tctgcaaaac tgtatagctg tgacactgta tattgtacat gtgtacattg tgtaaaatag
     6181 agcttaaatc aacctaacgt tcccacactg tcttgattga cttcctgtga tgcccgaggc
     6241 ttattcttct ggagtagttt ctcatctcct ttggaggaag atgatgatta ttcttataaa
     6301 ttaccttcag ccaatactag ataagccact aagtaaaaaa taataatgat gaccacctca
     6361 actggttagt aaaatatcta atcagaaaac aacagtttga tgatttcccc ctagagtcaa
     6421 tattttatca ccctaaataa atttcagtaa aatctatatt tctgaagttt tatactttat
     6481 tctgatcatc tatcctcttt gttttaaaga gatttttata aaccatttat taagtgttct
     6541 gatatttcac ttacaacttt ttgaaatttt ttacagaaca ttaagtggtt agactattga
     6601 gccataaaaa tttgagttgt gtagtagtcg agatttcttg attatatgta aactttccct
     6661 aagcactggg aatacaaaga attgcactaa ttcatagact tttcatatac tagtgaccaa
     6721 tgcacattaa tttaaatctt gtatgtaaaa gcttatatgg aggattgtct tctggtgtct
     6781 tcgaaagtca tgtccatctt aagatgtaaa aatgaaaatc atagttatat tgtaatttag
     6841 tttaccctca aatgggatat gtaaataact gtgtttatac ataacctata gaacctcgcg
     6901 ttctttaaag tgttataaat aattactctc aaaaggtcct taggggagtg agaggtgcct
     6961 tctctgttag actgactcat aaacaacagt caagttgaaa agctggctta aactttaaag
     7021 gaatgacaga aattatcatt aatacttgac cgattgtgcc tagatattga agtgttttct
     7081 taagttctta ctgcttaaat atcagtatat taaggttttt ttctacgggt gtatatttta
     7141 ttaaaaagtc actttcttca accatttttt gtactgggcc tttaagaaat aaatccatcc
     7201 aactgtaaca acaaaaaacg tcttcaatat ataaattatg tctttttact tgctagattt
     7261 tactgtacag atttatattt tgagaaattt tatatgacta tgatatatac ctaagggact
     7321 aagcatacag ctaatgttta tataactcag cttgggtcta tcctacggtt aggtttgaat
     7381 aaatatattt tcattaactt ta
//
