LOCUS       XM_039078162            6214 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X11, mRNA.
ACCESSION   XM_039078162
VERSION     XM_039078162.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078162.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6214
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6214
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 24 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             396..3170
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X11"
                     /protein_id="XP_038934090.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRL
                     TISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQ
                     SLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKL
                     PPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERSFFIRMKSTLT
                     KRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDC
                     HMFVTRVNMDLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNK
                     GQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIA
                     QLPHLPEKASESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSG
                     SACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGSMQIKVERYVE
                     SEADLRLQPCESLTSDSAKDSDSATEAGAQASSKHQKRKRRRKRQKGGSTSRRRLSSA
                     SSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESP
                     YSMTKPPTSEHFPSPQGQGGSSGGGGALHVTIPDSVLTPPGADGTAGRKTQFSGTAPV
                     ASDPLSPPLSASPRDKHPGGGAGSGGSGPGTSNSLLYTGDLEALQRLQAGNVVLPLVH
                     RVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDP
                     KTPMEMLYHHVHRLNMSGPFGSAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIH
                     AAQTLERKED"
ORIGIN      
        1 cccctcccct tcttctctca gctgggctcg cgcggcgctg ctagagcagc cagtgaaagc
       61 aacatcctgg aaagaggggg gagcaacagt gccccccaaa agggagaaaa ggccccaccc
      121 tgacacgttt tgctgtttgc aagtccctcg cacacacccc cccccgcacc tcctcctcgc
      181 caccaccccc ccacctcagc ccgctgcgcg cacatcaaag cgcctctccg ccgcgcacag
      241 tggccgcggc tcactaatgg gattgcaggc tggtgcctgg ctccgctgct gccgccgccg
      301 ctcgcgccgc tgctgccgcc gccgcccgaa cccgagcccg agaccccgcc agtccgagcc
      361 cagagcagac gcgcctgggg ctccaagccg cggcgatgat ccgaatcttt ccggatttca
      421 gcgtgcaggt gacggccgcg gcggccggcg gggcagccgc tggggtaccg gccggtgcgg
      481 gcatggggag ggccggcgcc gcggccaacg gcaccccgca gaacgtccag ggcatcacct
      541 cctaccagca gcgtttacaa gcactgagaa aggagaaatc cagagatgct gctcgctccc
      601 gccggggaaa agaaaacttt gagttctatg aattggccaa gctgttgcct cttcctgccg
      661 ccatcaccag ccagctcgac aaggcgtcca tcattcgact tacaattagt tatctcaaga
      721 tgagggactt tgccaaccaa ggggaccctc catggaatct gaggatggaa ggccctccac
      781 caaacacctc tgtaaaaggt gcacaacgaa ggcggagccc gagtgcactg gccattgaag
      841 tatttgaagc acatttggga agccacattt tgcagtccct ggatggcttc gtatttgcac
      901 taaatcaaga aggaaaattt ttgtacattt ctgaaaccgt ctctatctac ctaggcctct
      961 cacaagtgga gctgacaggc agcagcgtct ttgactatgt ccaccctggg gaccacgtgg
     1021 agatggcaga gcagctgggc atgaagctcc cgcctgggcg gggcctcctc tcgcagggca
     1081 ccacagagga cgcggccagt tcggcatctt cctcctctca gtcagagacc cctgagccag
     1141 tggagacaac cagccccggt ctgctaacta ctgacaacac ccttgaacgg tcctttttca
     1201 tccgaatgaa atctactctg accaaacgcg gagtgcacat caagtcgtcg ggatataagg
     1261 tgatccacat aacaggccgg cttcgcctca gagtgtcgct gtcccacggg aggaccgtcc
     1321 ccagccaaat catgggtctc gtggttgtgg ctcatgcctt gcctccccct acgatcaatg
     1381 aagtcagaat tgactgccat atgttcgtca ctcgagtaaa catggacctc aatatcattt
     1441 actgtgaaaa taggattact gactacatgg atctgactcc tgtagacatc gtagggaaaa
     1501 gatgctacca cttcatccat gccgaagacg tggaaggcat caggcacagt cacctggact
     1561 tgctgaataa gggtcagtgt gtgaccaagt actatcgctg gatgcagaag aatggaggtt
     1621 acatctggat acagtctagc gccaccatag ccattaatgc gaagaacgcg aatgagaaga
     1681 acatcatctg ggtgaattat cttctcagca atccagagta caaggacaca cccatggaca
     1741 ttgcgcaact cccacatttg ccagagaaag cttcagaatc ctcagagaca tccgactcag
     1801 agtcagactc taaagacacc tcaggtatta cagaggacaa cgagaactcc aagtccgacg
     1861 agaagggcaa tcagtccgaa aacagcgaag atccagagcc tgaccgcaag aagtcaggca
     1921 gcgcgtgcga caacgacatg aactgcaacg acgacggtca cagctccagc aacccggaca
     1981 gccgtgacag cgacgacagc ttcgagcact cggactttga acaccccaag gcggccgagg
     2041 acggcttcgg cgcgctgggc tccatgcaga tcaaagtgga gcgctacgtg gagagcgagg
     2101 cagatctgcg gctgcagccc tgcgagtccc tcacgtcgga cagcgccaag gactcagaca
     2161 gcgcgacaga ggcgggcgcg caggcgtcca gcaagcacca gaagcgcaag cggcggcgga
     2221 aacggcagaa gggcggcagc accagtcgcc ggcgcctgtc cagcgcgtcc agcccaggcc
     2281 tggacgccgg tcttgtggag cctccgcggc tgctgtcttc gccgcacagc gcttcggtgc
     2341 tcaagatcaa gacagagatc gccgaaccca tcaacttcga caacgacagc agcatctgga
     2401 actacccacc caaccgggag atctccagga acgagtcccc atacagcatg accaagcccc
     2461 ccacctccga gcacttccca tccccccagg gccagggagg cagcagcgga ggcgggggag
     2521 cgctacacgt gaccatcccc gactcggtcc tcaccccacc gggcgctgat ggcactgctg
     2581 gccgcaagac tcagttcagc ggaacagccc cggtggcctc tgatccactg tcgcccccgc
     2641 tctcggcgtc cccgcgggac aagcaccctg gaggcggggc ggggagtggt gggagtggcc
     2701 ctggtacgtc caactccttg ctgtacactg gggacctgga ggctctgcag aggttgcaag
     2761 cgggcaatgt cgtgcttccg ctggtacacc gggtgaccgg gaccctggcg gccaccagca
     2821 cagccgcaca gagggtctac accacaggca ccatccgcta cgcaccggct gaggtgaccc
     2881 tggccatgca gggcaacctg ctacccaatg cgcatgctgt taacttcgtg gacgttaaca
     2941 gcccaggctt cggcctcgac cccaagacgc ccatggagat gctctaccac cacgtgcacc
     3001 gactcaacat gtcaggacca tttggcagcg ccgtgagcgc ggccagcctc acacagatgc
     3061 caggtggcaa cgtgttcacc acggctgagg gactcttctc cacgctgccc ttcccggtct
     3121 acagcaacgg aatccacgcg gcacagactc tggagcgcaa ggaggactga gcgggcccca
     3181 ctcaggaggc atcgtcgttt tcgtttagac ctttcattct agcactttga atttgagctg
     3241 gccagcgtct tctcgcaaca cggtggcccc attccacccc cctctttctt tcagtggact
     3301 tattctttct tgtaaagacg tttatttttt gccttcagag ggtcagatga ccggttgcct
     3361 gccattttgt cttctaagat gtgtgttggg ttgtttggct ttcctttgca tctttattaa
     3421 gatgtcttta atgtgtatat gcctctgcca tagaatactc agtcttgtgg tcaagagatt
     3481 tctcaagtga caaccattgg gtttttcttc ctaaagatct tgatatgatc aagatggaaa
     3541 gacaagcata aatgattgtg ccctgtttga ctaagtcaaa tgaaatgggg tgggtggttt
     3601 ttttgttttc ctgttcctaa ttcctttgaa aatagggaaa tagtatttta gaattttatg
     3661 cagaatttaa ttctttttat gattaagatt ttaagatttt tcttacttgc acataaaata
     3721 atttgggttc ttaaacttaa tttctggcct gtgactagaa tttttttttt aaaaaaaaaa
     3781 aacaaagttg gactaagtgt taattactga aacattaact taatttctaa aaccatggtg
     3841 ctatcattta ttaatctata atgtcttcat acaaaataca gctcccgggc tggattttgg
     3901 aaaagaaaat gtgttctgtc ctggtctgga gtcccgttgc tacagtcagt ctccttggtt
     3961 agttaagaca gagccctcat taacatttgc tgcagaactt aaaaagttgt tttacctccc
     4021 aactaacaaa catagcctca ctttcaattt tatgggtcag taaagccctg ttcaaagggg
     4081 gctttcggac aactcagact gatctgagga acagttgaag tacatactgc catttttgag
     4141 attctttttt ccttactcag tctaactgag gctgattttt cacaacttca gtaacacttc
     4201 agagtaaaag gaggaggaga aatatttaac acgctctttg tttatttggg gttttttgtt
     4261 tgtttgtttg tttctatttc tgctaagaaa aaaacaggtt gtattggggg ggggagtgct
     4321 gatttgatgg aatttatttc cctttgattc ttatttgagt tgaaaccaac aagtttttaa
     4381 aactaaagaa tgggttaata agcttcagac agattaactg caactgaaaa ccgcacattc
     4441 aatgaaaaaa gagaaaaaaa ggaaaaaaga aaaaggaaaa gaaaaaagag cctattttgt
     4501 cttcgttgcc agaaatcagt gtggtgtcaa acactccaag tgactgtcca gtgtcgactc
     4561 ttctcccact tcatttatgg cagcatccaa tcccagatgt gagaactgtg acgtgtgcag
     4621 cgtgtagtgt ccttggccgt gggtcccatt gcagtttctg tgtgttccta tatgcagtgt
     4681 atgctaagct actgtagtcg ttttgtcccc gtcttctccg tgctctgtct ctagtggagt
     4741 ggcacagtcc cattcctgca gtcctagtga atcggtgact cttgggggtt agtgggtttg
     4801 tgtggtggcc tttccctgtg atgtcaccca tatgcttcta ttgtctgcga atcctgtctt
     4861 acttttccaa atcactgctg tttcctttgc tgttgtatac tctccctgcc tcccctggtc
     4921 tttccctgtc tcccctttct ctcctctgct tcccttccct gataccccaa atctatgtca
     4981 ttctcagaga taaaaaagaa aaaaaaagac tcttaactag ctcaaggtta atggagccat
     5041 ctttcccaca acggaattct gggtctgact ttctctgtgg agtactacac agcactgaag
     5101 aataatgctc agatatattg actaaattga tgccatgcag cctcagctgt taacattccc
     5161 agagtccctt gtgctctacc tataagcagt gggtgctttt ctttgctttt ctttcaggtt
     5221 ggctgatgga gcagtatata aagcaattac cagttaaaca gaaaattatt tcaaaggcca
     5281 acattttttt aaacaaaatg ggaggggtta atggaatata gaattgtcat atatatttgt
     5341 ttattcgtgc aatgctaata tagtaactca gctgtccttt gacttgtcac tgtgctgagt
     5401 ggattcctct agaactctgg attccattga ttgggcccag gccacggtgg aataataaca
     5461 gagggaagtt aaatgccaca gagcttagca ctgagcttcc ttgaaggact taaatcagtt
     5521 tagaagatga agaaagccga tggagaaatt taaagattag ttttggaagc tgtactctag
     5581 ctatcgaaca atcaagggaa tgcacctatc agctacaaag aacagccaga cagctgggtt
     5641 ttcctttcct tttataaatg tttctgtgtt gtgtcaaaat gatttctggt gatttaaact
     5701 aacagataat cacagccgct gtccaaatcc atagtgttta aaaattacaa aatgaaaaaa
     5761 aaaaaccact tcattacctg tgaagactgt gtctgtgttt ttaactattt cttgtacaaa
     5821 tatatgaaaa cttttatgag gagactggtg ccacgtagct gaataatggg gaaagggatc
     5881 ttctgttcgt aaaaacctta gcagtgttac caactctaca gtatatatat aaaaataatt
     5941 aaaacgttac aaagcgacag ctatgctaca tttgttttgt gtgaatctaa ccggacttaa
     6001 cctcctgagt gcctggctta ttttgaaaca ttcttttcat tgaccattga taatgctgca
     6061 aatcagaaat gtacatactt catttacaac agggttcttt ttatactttt gtagattctc
     6121 atacatgtca cacacatggt tgtctttatg taacttaatt tttttcatct gcaggtgcca
     6181 ttttcataat aaacttctct tggatttgtt acta
//
