LOCUS       XM_039078160            6272 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X9, mRNA.
ACCESSION   XM_039078160
VERSION     XM_039078160.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078160.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6272
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             397..3228
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X9"
                     /protein_id="XP_038934088.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRL
                     TISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRS
                     PSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVF
                     DYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPGLL
                     TTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGL
                     VVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRITDYMDLTPVDIVGKRCYHF
                     IHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNII
                     WVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGITEDNENSKSDE
                     KGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAA
                     EDGFGALGSMQIKVERYVESEADLRLQPCESLTSDSAKDSDSATEAGAQASSKHQKRK
                     RRRKRQKGGSTSRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDN
                     DSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVTIPDSVLTP
                     PGADGTAGRKTQFSGTAPVASDPLSPPLSASPRDKHPGGGAGSGGSGPGTSNSLLYTG
                     DLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLP
                     NAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGSAVSAASLTQMPGGNVFT
                     TAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 ccccctcccc ttcttctctc agctgggctc gcgcggcgct gctagagcag ccagtgaaag
       61 caacatcctg gaaagagggg ggagcaacag tgccccccaa aagggagaaa aggccccacc
      121 ctgacacgtt ttgctgtttg caagtccctc gcacacaccc ccccccgcac ctcctcctcg
      181 ccaccacccc cccacctcag cccgctgcgc gcacatcaaa gcgcctctcc gccgcgcaca
      241 gtggccgcgg ctcactaatg ggattgcagg ctggtgcctg gctccgctgc tgccgccgcc
      301 gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagaccccgc cagtccgagc
      361 ccagagcaga cgcgcctggg gctccaagcc gcggcgatga tccgaatctt tccggatttc
      421 agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc ggccggtgcg
      481 ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca gggcatcacc
      541 tcctaccagc agcgtttaca agcactgaga aaggagaaat ccagagatgc tgctcgctcc
      601 cgccggggaa aagaaaactt tgagttctat gaattggcca agctgttgcc tcttcctgcc
      661 gccatcacca gccagctcga caaggcgtcc atcattcgac ttacaattag ttatctcaag
      721 atgagggact ttgccaacca aggggaccct ccatggaatc tgaggatgga aggccctcca
      781 ccaaacacct ctgtaaaagg gattcaaatg tggaaatctg aactctgcat gagaaagaca
      841 ccatgtgaag ttataggtgc acaacgaagg cggagcccga gtgcactggc cattgaagta
      901 tttgaagcac atttgggaag ccacattttg cagtccctgg atggcttcgt atttgcacta
      961 aatcaagaag gaaaattttt gtacatttct gaaaccgtct ctatctacct aggcctctca
     1021 caagtggagc tgacaggcag cagcgtcttt gactatgtcc accctgggga ccacgtggag
     1081 atggcagagc agctgggcat gaagctcccg cctgggcggg gcctcctctc gcagggcacc
     1141 acagaggacg cggccagttc ggcatcttcc tcctctcagt cagagacccc tgagccagtg
     1201 gagacaacca gccccggtct gctaactact gacaacaccc ttgaacggtc ctttttcatc
     1261 cgaatgaaat ctactctgac caaacgcgga gtgcacatca agtcgtcggg atataaggtg
     1321 atccacataa caggccggct tcgcctcaga gtgtcgctgt cccacgggag gaccgtcccc
     1381 agccaaatca tgggtctcgt ggttgtggct catgccttgc ctccccctac gatcaatgaa
     1441 gtcagaattg actgccatat gttcgtcact cgagtaaaca tggacctcaa tatcatttac
     1501 tgtgaaaata ggattactga ctacatggat ctgactcctg tagacatcgt agggaaaaga
     1561 tgctaccact tcatccatgc cgaagacgtg gaaggcatca ggcacagtca cctggacttg
     1621 ctgaataagg gtcagtgtgt gaccaagtac tatcgctgga tgcagaagaa tggaggttac
     1681 atctggatac agtctagcgc caccatagcc attaatgcga agaacgcgaa tgagaagaac
     1741 atcatctggg tgaattatct tctcagcaat ccagagtaca aggacacacc catggacatt
     1801 gcgcaactcc cacatttgcc agagaaagct tcagaatcct cagagacatc cgactcagag
     1861 tcagactcta aagacacctc aggtattaca gaggacaacg agaactccaa gtccgacgag
     1921 aagggcaatc agtccgaaaa cagcgaagat ccagagcctg accgcaagaa gtcaggcagc
     1981 gcgtgcgaca acgacatgaa ctgcaacgac gacggtcaca gctccagcaa cccggacagc
     2041 cgtgacagcg acgacagctt cgagcactcg gactttgaac accccaaggc ggccgaggac
     2101 ggcttcggcg cgctgggctc catgcagatc aaagtggagc gctacgtgga gagcgaggca
     2161 gatctgcggc tgcagccctg cgagtccctc acgtcggaca gcgccaagga ctcagacagc
     2221 gcgacagagg cgggcgcgca ggcgtccagc aagcaccaga agcgcaagcg gcggcggaaa
     2281 cggcagaagg gcggcagcac cagtcgccgg cgcctgtcca gcgcgtccag cccaggcctg
     2341 gacgccggtc ttgtggagcc tccgcggctg ctgtcttcgc cgcacagcgc ttcggtgctc
     2401 aagatcaaga cagagatcgc cgaacccatc aacttcgaca acgacagcag catctggaac
     2461 tacccaccca accgggagat ctccaggaac gagtccccat acagcatgac caagcccccc
     2521 acctccgagc acttcccatc cccccagggc cagggaggca gcagcggagg cgggggagcg
     2581 ctacacgtga ccatccccga ctcggtcctc accccaccgg gcgctgatgg cactgctggc
     2641 cgcaagactc agttcagcgg aacagccccg gtggcctctg atccactgtc gcccccgctc
     2701 tcggcgtccc cgcgggacaa gcaccctgga ggcggggcgg ggagtggtgg gagtggccct
     2761 ggtacgtcca actccttgct gtacactggg gacctggagg ctctgcagag gttgcaagcg
     2821 ggcaatgtcg tgcttccgct ggtacaccgg gtgaccggga ccctggcggc caccagcaca
     2881 gccgcacaga gggtctacac cacaggcacc atccgctacg caccggctga ggtgaccctg
     2941 gccatgcagg gcaacctgct acccaatgcg catgctgtta acttcgtgga cgttaacagc
     3001 ccaggcttcg gcctcgaccc caagacgccc atggagatgc tctaccacca cgtgcaccga
     3061 ctcaacatgt caggaccatt tggcagcgcc gtgagcgcgg ccagcctcac acagatgcca
     3121 ggtggcaacg tgttcaccac ggctgaggga ctcttctcca cgctgccctt cccggtctac
     3181 agcaacggaa tccacgcggc acagactctg gagcgcaagg aggactgagc gggccccact
     3241 caggaggcat cgtcgttttc gtttagacct ttcattctag cactttgaat ttgagctggc
     3301 cagcgtcttc tcgcaacacg gtggccccat tccacccccc tctttctttc agtggactta
     3361 ttctttcttg taaagacgtt tattttttgc cttcagaggg tcagatgacc ggttgcctgc
     3421 cattttgtct tctaagatgt gtgttgggtt gtttggcttt cctttgcatc tttattaaga
     3481 tgtctttaat gtgtatatgc ctctgccata gaatactcag tcttgtggtc aagagatttc
     3541 tcaagtgaca accattgggt ttttcttcct aaagatcttg atatgatcaa gatggaaaga
     3601 caagcataaa tgattgtgcc ctgtttgact aagtcaaatg aaatggggtg ggtggttttt
     3661 ttgttttcct gttcctaatt cctttgaaaa tagggaaata gtattttaga attttatgca
     3721 gaatttaatt ctttttatga ttaagatttt aagatttttc ttacttgcac ataaaataat
     3781 ttgggttctt aaacttaatt tctggcctgt gactagaatt ttttttttaa aaaaaaaaaa
     3841 caaagttgga ctaagtgtta attactgaaa cattaactta atttctaaaa ccatggtgct
     3901 atcatttatt aatctataat gtcttcatac aaaatacagc tcccgggctg gattttggaa
     3961 aagaaaatgt gttctgtcct ggtctggagt cccgttgcta cagtcagtct ccttggttag
     4021 ttaagacaga gccctcatta acatttgctg cagaacttaa aaagttgttt tacctcccaa
     4081 ctaacaaaca tagcctcact ttcaatttta tgggtcagta aagccctgtt caaagggggc
     4141 tttcggacaa ctcagactga tctgaggaac agttgaagta catactgcca tttttgagat
     4201 tcttttttcc ttactcagtc taactgaggc tgatttttca caacttcagt aacacttcag
     4261 agtaaaagga ggaggagaaa tatttaacac gctctttgtt tatttggggt tttttgtttg
     4321 tttgtttgtt tctatttctg ctaagaaaaa aacaggttgt attggggggg ggagtgctga
     4381 tttgatggaa tttatttccc tttgattctt atttgagttg aaaccaacaa gtttttaaaa
     4441 ctaaagaatg ggttaataag cttcagacag attaactgca actgaaaacc gcacattcaa
     4501 tgaaaaaaga gaaaaaaagg aaaaaagaaa aaggaaaaga aaaaagagcc tattttgtct
     4561 tcgttgccag aaatcagtgt ggtgtcaaac actccaagtg actgtccagt gtcgactctt
     4621 ctcccacttc atttatggca gcatccaatc ccagatgtga gaactgtgac gtgtgcagcg
     4681 tgtagtgtcc ttggccgtgg gtcccattgc agtttctgtg tgttcctata tgcagtgtat
     4741 gctaagctac tgtagtcgtt ttgtccccgt cttctccgtg ctctgtctct agtggagtgg
     4801 cacagtccca ttcctgcagt cctagtgaat cggtgactct tgggggttag tgggtttgtg
     4861 tggtggcctt tccctgtgat gtcacccata tgcttctatt gtctgcgaat cctgtcttac
     4921 ttttccaaat cactgctgtt tcctttgctg ttgtatactc tccctgcctc ccctggtctt
     4981 tccctgtctc ccctttctct cctctgcttc ccttccctga taccccaaat ctatgtcatt
     5041 ctcagagata aaaaagaaaa aaaaagactc ttaactagct caaggttaat ggagccatct
     5101 ttcccacaac ggaattctgg gtctgacttt ctctgtggag tactacacag cactgaagaa
     5161 taatgctcag atatattgac taaattgatg ccatgcagcc tcagctgtta acattcccag
     5221 agtcccttgt gctctaccta taagcagtgg gtgcttttct ttgcttttct ttcaggttgg
     5281 ctgatggagc agtatataaa gcaattacca gttaaacaga aaattatttc aaaggccaac
     5341 atttttttaa acaaaatggg aggggttaat ggaatataga attgtcatat atatttgttt
     5401 attcgtgcaa tgctaatata gtaactcagc tgtcctttga cttgtcactg tgctgagtgg
     5461 attcctctag aactctggat tccattgatt gggcccaggc cacggtggaa taataacaga
     5521 gggaagttaa atgccacaga gcttagcact gagcttcctt gaaggactta aatcagttta
     5581 gaagatgaag aaagccgatg gagaaattta aagattagtt ttggaagctg tactctagct
     5641 atcgaacaat caagggaatg cacctatcag ctacaaagaa cagccagaca gctgggtttt
     5701 cctttccttt tataaatgtt tctgtgttgt gtcaaaatga tttctggtga tttaaactaa
     5761 cagataatca cagccgctgt ccaaatccat agtgtttaaa aattacaaaa tgaaaaaaaa
     5821 aaaccacttc attacctgtg aagactgtgt ctgtgttttt aactatttct tgtacaaata
     5881 tatgaaaact tttatgagga gactggtgcc acgtagctga ataatgggga aagggatctt
     5941 ctgttcgtaa aaaccttagc agtgttacca actctacagt atatatataa aaataattaa
     6001 aacgttacaa agcgacagct atgctacatt tgttttgtgt gaatctaacc ggacttaacc
     6061 tcctgagtgc ctggcttatt ttgaaacatt cttttcattg accattgata atgctgcaaa
     6121 tcagaaatgt acatacttca tttacaacag ggttcttttt atacttttgt agattctcat
     6181 acatgtcaca cacatggttg tctttatgta acttaatttt tttcatctgc aggtgccatt
     6241 ttcataataa acttctcttg gatttgttac ta
//
