LOCUS       XM_039078159            6295 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X8, mRNA.
ACCESSION   XM_039078159
VERSION     XM_039078159.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 18, 2024 this sequence was replaced by
            NM_001427296.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6295
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6295
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 34 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             396..3251
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X8"
                     /protein_id="XP_038934087.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGL
                     SQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETP
                     EPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSH
                     GRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRITDYMDLTP
                     VDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAI
                     NAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSED
                     NENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHS
                     DFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQPCESLTSDSAKDSDSATEAGAQA
                     SSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEI
                     AEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVT
                     IPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPLSASPRDKHPGGGAGSGGSGPGT
                     SNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTL
                     AMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGSAVSAASLTQ
                     MPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 cccctcccct tcttctctca gctgggctcg cgcggcgctg ctagagcagc cagtgaaagc
       61 aacatcctgg aaagaggggg gagcaacagt gccccccaaa agggagaaaa ggccccaccc
      121 tgacacgttt tgctgtttgc aagtccctcg cacacacccc cccccgcacc tcctcctcgc
      181 caccaccccc ccacctcagc ccgctgcgcg cacatcaaag cgcctctccg ccgcgcacag
      241 tggccgcggc tcactaatgg gattgcaggc tggtgcctgg ctccgctgct gccgccgccg
      301 ctcgcgccgc tgctgccgcc gccgcccgaa cccgagcccg agaccccgcc agtccgagcc
      361 cagagcagac gcgcctgggg ctccaagccg cggcgatgat ccgaatcttt ccggatttca
      421 gcgtgcaggt gacggccgcg gcggccggcg gggcagccgc tggggtaccg gccggtgcgg
      481 gcatggggag ggccggcgcc gcggccaacg gcaccccgca gaacgtccag ggcatcacct
      541 cctaccagca gcgaataact gcccagcatc ctctgcccaa ccaatcagaa tgtaggaaaa
      601 tctacagata tgacggaatc tactgtgaat ctacctacca gaatttacaa gcactgagaa
      661 aggagaaatc cagagatgct gctcgctccc gccggggaaa agaaaacttt gagttctatg
      721 aattggccaa gctgttgcct cttcctgccg ccatcaccag ccagctcgac aaggcgtcca
      781 tcattcgact tacaattagt tatctcaaga tgagggactt tgccaaccaa ggggaccctc
      841 catggaatct gaggatggaa ggccctccac caaacacctc tgtaaaaggt gcacaacgaa
      901 ggcggagccc gagtgcactg gccattgaag tatttgaagc acatttggga agccacattt
      961 tgcagtccct ggatggcttc gtatttgcac taaatcaaga aggaaaattt ttgtacattt
     1021 ctgaaaccgt ctctatctac ctaggcctct cacaagtgga gctgacaggc agcagcgtct
     1081 ttgactatgt ccaccctggg gaccacgtgg agatggcaga gcagctgggc atgaagctcc
     1141 cgcctgggcg gggcctcctc tcgcagggca ccacagagga cgcggccagt tcggcatctt
     1201 cctcctctca gtcagagacc cctgagccag tggagacaac cagccccggt ctgctaacta
     1261 ctgacaacac ccttgaacgg tcctttttca tccgaatgaa atctactctg accaaacgcg
     1321 gagtgcacat caagtcgtcg ggatataagg tgatccacat aacaggccgg cttcgcctca
     1381 gagtgtcgct gtcccacggg aggaccgtcc ccagccaaat catgggtctc gtggttgtgg
     1441 ctcatgcctt gcctccccct acgatcaatg aagtcagaat tgactgccat atgttcgtca
     1501 ctcgagtaaa catggacctc aatatcattt actgtgaaaa taggattact gactacatgg
     1561 atctgactcc tgtagacatc gtagggaaaa gatgctacca cttcatccat gccgaagacg
     1621 tggaaggcat caggcacagt cacctggact tgctgaataa gggtcagtgt gtgaccaagt
     1681 actatcgctg gatgcagaag aatggaggtt acatctggat acagtctagc gccaccatag
     1741 ccattaatgc gaagaacgcg aatgagaaga acatcatctg ggtgaattat cttctcagca
     1801 atccagagta caaggacaca cccatggaca ttgcgcaact cccacatttg ccagagaaag
     1861 cttcagaatc ctcagagaca tccgactcag agtcagactc taaagacacc tcagaggaca
     1921 acgagaactc caagtccgac gagaagggca atcagtccga aaacagcgaa gatccagagc
     1981 ctgaccgcaa gaagtcaggc agcgcgtgcg acaacgacat gaactgcaac gacgacggtc
     2041 acagctccag caacccggac agccgtgaca gcgacgacag cttcgagcac tcggactttg
     2101 aacaccccaa ggcggccgag gacggcttcg gcgcgctggg ctccatgcag atcaaagtgg
     2161 agcgctacgt ggagagcgag gcagatctgc ggctgcagcc ctgcgagtcc ctcacgtcgg
     2221 acagcgccaa ggactcagac agcgcgacag aggcgggcgc gcaggcgtcc agcaagcacc
     2281 agaagcgcaa gcggcggcgg aaacggcaga agggcggcag caccagtcgc cggcgcctgt
     2341 ccagcgcgtc cagcccaggc ctggacgccg gtcttgtgga gcctccgcgg ctgctgtctt
     2401 cgccgcacag cgcttcggtg ctcaagatca agacagagat cgccgaaccc atcaacttcg
     2461 acaacgacag cagcatctgg aactacccac ccaaccggga gatctccagg aacgagtccc
     2521 catacagcat gaccaagccc cccacctccg agcacttccc atccccccag ggccagggag
     2581 gcagcagcgg aggcggggga gcgctacacg tgaccatccc cgactcggtc ctcaccccac
     2641 cgggcgctga tggcactgct ggccgcaaga ctcagttcag cggaacagcc ccggtggcct
     2701 ctgatccact gtcgcccccg ctctcggcgt ccccgcggga caagcaccct ggaggcgggg
     2761 cggggagtgg tgggagtggc cctggtacgt ccaactcctt gctgtacact ggggacctgg
     2821 aggctctgca gaggttgcaa gcgggcaatg tcgtgcttcc gctggtacac cgggtgaccg
     2881 ggaccctggc ggccaccagc acagccgcac agagggtcta caccacaggc accatccgct
     2941 acgcaccggc tgaggtgacc ctggccatgc agggcaacct gctacccaat gcgcatgctg
     3001 ttaacttcgt ggacgttaac agcccaggct tcggcctcga ccccaagacg cccatggaga
     3061 tgctctacca ccacgtgcac cgactcaaca tgtcaggacc atttggcagc gccgtgagcg
     3121 cggccagcct cacacagatg ccaggtggca acgtgttcac cacggctgag ggactcttct
     3181 ccacgctgcc cttcccggtc tacagcaacg gaatccacgc ggcacagact ctggagcgca
     3241 aggaggactg agcgggcccc actcaggagg catcgtcgtt ttcgtttaga cctttcattc
     3301 tagcactttg aatttgagct ggccagcgtc ttctcgcaac acggtggccc cattccaccc
     3361 ccctctttct ttcagtggac ttattctttc ttgtaaagac gtttattttt tgccttcaga
     3421 gggtcagatg accggttgcc tgccattttg tcttctaaga tgtgtgttgg gttgtttggc
     3481 tttcctttgc atctttatta agatgtcttt aatgtgtata tgcctctgcc atagaatact
     3541 cagtcttgtg gtcaagagat ttctcaagtg acaaccattg ggtttttctt cctaaagatc
     3601 ttgatatgat caagatggaa agacaagcat aaatgattgt gccctgtttg actaagtcaa
     3661 atgaaatggg gtgggtggtt tttttgtttt cctgttccta attcctttga aaatagggaa
     3721 atagtatttt agaattttat gcagaattta attcttttta tgattaagat tttaagattt
     3781 ttcttacttg cacataaaat aatttgggtt cttaaactta atttctggcc tgtgactaga
     3841 attttttttt taaaaaaaaa aaacaaagtt ggactaagtg ttaattactg aaacattaac
     3901 ttaatttcta aaaccatggt gctatcattt attaatctat aatgtcttca tacaaaatac
     3961 agctcccggg ctggattttg gaaaagaaaa tgtgttctgt cctggtctgg agtcccgttg
     4021 ctacagtcag tctccttggt tagttaagac agagccctca ttaacatttg ctgcagaact
     4081 taaaaagttg ttttacctcc caactaacaa acatagcctc actttcaatt ttatgggtca
     4141 gtaaagccct gttcaaaggg ggctttcgga caactcagac tgatctgagg aacagttgaa
     4201 gtacatactg ccatttttga gattcttttt tccttactca gtctaactga ggctgatttt
     4261 tcacaacttc agtaacactt cagagtaaaa ggaggaggag aaatatttaa cacgctcttt
     4321 gtttatttgg ggttttttgt ttgtttgttt gtttctattt ctgctaagaa aaaaacaggt
     4381 tgtattgggg gggggagtgc tgatttgatg gaatttattt ccctttgatt cttatttgag
     4441 ttgaaaccaa caagttttta aaactaaaga atgggttaat aagcttcaga cagattaact
     4501 gcaactgaaa accgcacatt caatgaaaaa agagaaaaaa aggaaaaaag aaaaaggaaa
     4561 agaaaaaaga gcctattttg tcttcgttgc cagaaatcag tgtggtgtca aacactccaa
     4621 gtgactgtcc agtgtcgact cttctcccac ttcatttatg gcagcatcca atcccagatg
     4681 tgagaactgt gacgtgtgca gcgtgtagtg tccttggccg tgggtcccat tgcagtttct
     4741 gtgtgttcct atatgcagtg tatgctaagc tactgtagtc gttttgtccc cgtcttctcc
     4801 gtgctctgtc tctagtggag tggcacagtc ccattcctgc agtcctagtg aatcggtgac
     4861 tcttgggggt tagtgggttt gtgtggtggc ctttccctgt gatgtcaccc atatgcttct
     4921 attgtctgcg aatcctgtct tacttttcca aatcactgct gtttcctttg ctgttgtata
     4981 ctctccctgc ctcccctggt ctttccctgt ctcccctttc tctcctctgc ttcccttccc
     5041 tgatacccca aatctatgtc attctcagag ataaaaaaga aaaaaaaaga ctcttaacta
     5101 gctcaaggtt aatggagcca tctttcccac aacggaattc tgggtctgac tttctctgtg
     5161 gagtactaca cagcactgaa gaataatgct cagatatatt gactaaattg atgccatgca
     5221 gcctcagctg ttaacattcc cagagtccct tgtgctctac ctataagcag tgggtgcttt
     5281 tctttgcttt tctttcaggt tggctgatgg agcagtatat aaagcaatta ccagttaaac
     5341 agaaaattat ttcaaaggcc aacatttttt taaacaaaat gggaggggtt aatggaatat
     5401 agaattgtca tatatatttg tttattcgtg caatgctaat atagtaactc agctgtcctt
     5461 tgacttgtca ctgtgctgag tggattcctc tagaactctg gattccattg attgggccca
     5521 ggccacggtg gaataataac agagggaagt taaatgccac agagcttagc actgagcttc
     5581 cttgaaggac ttaaatcagt ttagaagatg aagaaagccg atggagaaat ttaaagatta
     5641 gttttggaag ctgtactcta gctatcgaac aatcaaggga atgcacctat cagctacaaa
     5701 gaacagccag acagctgggt tttcctttcc ttttataaat gtttctgtgt tgtgtcaaaa
     5761 tgatttctgg tgatttaaac taacagataa tcacagccgc tgtccaaatc catagtgttt
     5821 aaaaattaca aaatgaaaaa aaaaaaccac ttcattacct gtgaagactg tgtctgtgtt
     5881 tttaactatt tcttgtacaa atatatgaaa acttttatga ggagactggt gccacgtagc
     5941 tgaataatgg ggaaagggat cttctgttcg taaaaacctt agcagtgtta ccaactctac
     6001 agtatatata taaaaataat taaaacgtta caaagcgaca gctatgctac atttgttttg
     6061 tgtgaatcta accggactta acctcctgag tgcctggctt attttgaaac attcttttca
     6121 ttgaccattg ataatgctgc aaatcagaaa tgtacatact tcatttacaa cagggttctt
     6181 tttatacttt tgtagattct catacatgtc acacacatgg ttgtctttat gtaacttaat
     6241 ttttttcatc tgcaggtgcc attttcataa taaacttctc ttggatttgt tacta
//
