LOCUS       XM_039078158            6301 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X7, mRNA.
ACCESSION   XM_039078158
VERSION     XM_039078158.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078158.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6301
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6301
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 35 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             396..3257
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X7"
                     /protein_id="XP_038934086.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYL
                     GLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSE
                     TPEPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSL
                     SHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRITDYMDL
                     TPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATI
                     AINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTS
                     EDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFE
                     HSDFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQPCESLTSDSAKDSDSATEAGA
                     QASSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKT
                     EIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALH
                     VTIPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPLSASPRDKHPGGGAGSGGSGP
                     GTSNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEV
                     TLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGSAVSAASL
                     TQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 cccctcccct tcttctctca gctgggctcg cgcggcgctg ctagagcagc cagtgaaagc
       61 aacatcctgg aaagaggggg gagcaacagt gccccccaaa agggagaaaa ggccccaccc
      121 tgacacgttt tgctgtttgc aagtccctcg cacacacccc cccccgcacc tcctcctcgc
      181 caccaccccc ccacctcagc ccgctgcgcg cacatcaaag cgcctctccg ccgcgcacag
      241 tggccgcggc tcactaatgg gattgcaggc tggtgcctgg ctccgctgct gccgccgccg
      301 ctcgcgccgc tgctgccgcc gccgcccgaa cccgagcccg agaccccgcc agtccgagcc
      361 cagagcagac gcgcctgggg ctccaagccg cggcgatgat ccgaatcttt ccggatttca
      421 gcgtgcaggt gacggccgcg gcggccggcg gggcagccgc tggggtaccg gccggtgcgg
      481 gcatggggag ggccggcgcc gcggccaacg gcaccccgca gaacgtccag ggcatcacct
      541 cctaccagca gcgaataact gcccagcatc ctctgcccaa ccaatcagaa tgtaggaaaa
      601 tctacagata tgacggaatc tactgtgaat ctacctacca gaatttacaa gcactgagaa
      661 aggagaaatc cagagatgct gctcgctccc gccggggaaa agaaaacttt gagttctatg
      721 aattggccaa gctgttgcct cttcctgccg ccatcaccag ccagctcgac aaggcgtcca
      781 tcattcgact tacaattagt tatctcaaga tgagggactt tgccaaccaa ggggaccctc
      841 catggaatct gaggatggaa ggccctccac caaacacctc tgtaaaagtt ataggtgcac
      901 aacgaaggcg gagcccgagt gcactggcca ttgaagtatt tgaagcacat ttgggaagcc
      961 acattttgca gtccctggat ggcttcgtat ttgcactaaa tcaagaagga aaatttttgt
     1021 acatttctga aaccgtctct atctacctag gcctctcaca agtggagctg acaggcagca
     1081 gcgtctttga ctatgtccac cctggggacc acgtggagat ggcagagcag ctgggcatga
     1141 agctcccgcc tgggcggggc ctcctctcgc agggcaccac agaggacgcg gccagttcgg
     1201 catcttcctc ctctcagtca gagacccctg agccagtgga gacaaccagc cccggtctgc
     1261 taactactga caacaccctt gaacggtcct ttttcatccg aatgaaatct actctgacca
     1321 aacgcggagt gcacatcaag tcgtcgggat ataaggtgat ccacataaca ggccggcttc
     1381 gcctcagagt gtcgctgtcc cacgggagga ccgtccccag ccaaatcatg ggtctcgtgg
     1441 ttgtggctca tgccttgcct ccccctacga tcaatgaagt cagaattgac tgccatatgt
     1501 tcgtcactcg agtaaacatg gacctcaata tcatttactg tgaaaatagg attactgact
     1561 acatggatct gactcctgta gacatcgtag ggaaaagatg ctaccacttc atccatgccg
     1621 aagacgtgga aggcatcagg cacagtcacc tggacttgct gaataagggt cagtgtgtga
     1681 ccaagtacta tcgctggatg cagaagaatg gaggttacat ctggatacag tctagcgcca
     1741 ccatagccat taatgcgaag aacgcgaatg agaagaacat catctgggtg aattatcttc
     1801 tcagcaatcc agagtacaag gacacaccca tggacattgc gcaactccca catttgccag
     1861 agaaagcttc agaatcctca gagacatccg actcagagtc agactctaaa gacacctcag
     1921 aggacaacga gaactccaag tccgacgaga agggcaatca gtccgaaaac agcgaagatc
     1981 cagagcctga ccgcaagaag tcaggcagcg cgtgcgacaa cgacatgaac tgcaacgacg
     2041 acggtcacag ctccagcaac ccggacagcc gtgacagcga cgacagcttc gagcactcgg
     2101 actttgaaca ccccaaggcg gccgaggacg gcttcggcgc gctgggctcc atgcagatca
     2161 aagtggagcg ctacgtggag agcgaggcag atctgcggct gcagccctgc gagtccctca
     2221 cgtcggacag cgccaaggac tcagacagcg cgacagaggc gggcgcgcag gcgtccagca
     2281 agcaccagaa gcgcaagcgg cggcggaaac ggcagaaggg cggcagcacc agtcgccggc
     2341 gcctgtccag cgcgtccagc ccaggcctgg acgccggtct tgtggagcct ccgcggctgc
     2401 tgtcttcgcc gcacagcgct tcggtgctca agatcaagac agagatcgcc gaacccatca
     2461 acttcgacaa cgacagcagc atctggaact acccacccaa ccgggagatc tccaggaacg
     2521 agtccccata cagcatgacc aagcccccca cctccgagca cttcccatcc ccccagggcc
     2581 agggaggcag cagcggaggc gggggagcgc tacacgtgac catccccgac tcggtcctca
     2641 ccccaccggg cgctgatggc actgctggcc gcaagactca gttcagcgga acagccccgg
     2701 tggcctctga tccactgtcg cccccgctct cggcgtcccc gcgggacaag caccctggag
     2761 gcggggcggg gagtggtggg agtggccctg gtacgtccaa ctccttgctg tacactgggg
     2821 acctggaggc tctgcagagg ttgcaagcgg gcaatgtcgt gcttccgctg gtacaccggg
     2881 tgaccgggac cctggcggcc accagcacag ccgcacagag ggtctacacc acaggcacca
     2941 tccgctacgc accggctgag gtgaccctgg ccatgcaggg caacctgcta cccaatgcgc
     3001 atgctgttaa cttcgtggac gttaacagcc caggcttcgg cctcgacccc aagacgccca
     3061 tggagatgct ctaccaccac gtgcaccgac tcaacatgtc aggaccattt ggcagcgccg
     3121 tgagcgcggc cagcctcaca cagatgccag gtggcaacgt gttcaccacg gctgagggac
     3181 tcttctccac gctgcccttc ccggtctaca gcaacggaat ccacgcggca cagactctgg
     3241 agcgcaagga ggactgagcg ggccccactc aggaggcatc gtcgttttcg tttagacctt
     3301 tcattctagc actttgaatt tgagctggcc agcgtcttct cgcaacacgg tggccccatt
     3361 ccacccccct ctttctttca gtggacttat tctttcttgt aaagacgttt attttttgcc
     3421 ttcagagggt cagatgaccg gttgcctgcc attttgtctt ctaagatgtg tgttgggttg
     3481 tttggctttc ctttgcatct ttattaagat gtctttaatg tgtatatgcc tctgccatag
     3541 aatactcagt cttgtggtca agagatttct caagtgacaa ccattgggtt tttcttccta
     3601 aagatcttga tatgatcaag atggaaagac aagcataaat gattgtgccc tgtttgacta
     3661 agtcaaatga aatggggtgg gtggtttttt tgttttcctg ttcctaattc ctttgaaaat
     3721 agggaaatag tattttagaa ttttatgcag aatttaattc tttttatgat taagatttta
     3781 agatttttct tacttgcaca taaaataatt tgggttctta aacttaattt ctggcctgtg
     3841 actagaattt tttttttaaa aaaaaaaaac aaagttggac taagtgttaa ttactgaaac
     3901 attaacttaa tttctaaaac catggtgcta tcatttatta atctataatg tcttcataca
     3961 aaatacagct cccgggctgg attttggaaa agaaaatgtg ttctgtcctg gtctggagtc
     4021 ccgttgctac agtcagtctc cttggttagt taagacagag ccctcattaa catttgctgc
     4081 agaacttaaa aagttgtttt acctcccaac taacaaacat agcctcactt tcaattttat
     4141 gggtcagtaa agccctgttc aaagggggct ttcggacaac tcagactgat ctgaggaaca
     4201 gttgaagtac atactgccat ttttgagatt cttttttcct tactcagtct aactgaggct
     4261 gatttttcac aacttcagta acacttcaga gtaaaaggag gaggagaaat atttaacacg
     4321 ctctttgttt atttggggtt ttttgtttgt ttgtttgttt ctatttctgc taagaaaaaa
     4381 acaggttgta ttgggggggg gagtgctgat ttgatggaat ttatttccct ttgattctta
     4441 tttgagttga aaccaacaag tttttaaaac taaagaatgg gttaataagc ttcagacaga
     4501 ttaactgcaa ctgaaaaccg cacattcaat gaaaaaagag aaaaaaagga aaaaagaaaa
     4561 aggaaaagaa aaaagagcct attttgtctt cgttgccaga aatcagtgtg gtgtcaaaca
     4621 ctccaagtga ctgtccagtg tcgactcttc tcccacttca tttatggcag catccaatcc
     4681 cagatgtgag aactgtgacg tgtgcagcgt gtagtgtcct tggccgtggg tcccattgca
     4741 gtttctgtgt gttcctatat gcagtgtatg ctaagctact gtagtcgttt tgtccccgtc
     4801 ttctccgtgc tctgtctcta gtggagtggc acagtcccat tcctgcagtc ctagtgaatc
     4861 ggtgactctt gggggttagt gggtttgtgt ggtggccttt ccctgtgatg tcacccatat
     4921 gcttctattg tctgcgaatc ctgtcttact tttccaaatc actgctgttt cctttgctgt
     4981 tgtatactct ccctgcctcc cctggtcttt ccctgtctcc cctttctctc ctctgcttcc
     5041 cttccctgat accccaaatc tatgtcattc tcagagataa aaaagaaaaa aaaagactct
     5101 taactagctc aaggttaatg gagccatctt tcccacaacg gaattctggg tctgactttc
     5161 tctgtggagt actacacagc actgaagaat aatgctcaga tatattgact aaattgatgc
     5221 catgcagcct cagctgttaa cattcccaga gtcccttgtg ctctacctat aagcagtggg
     5281 tgcttttctt tgcttttctt tcaggttggc tgatggagca gtatataaag caattaccag
     5341 ttaaacagaa aattatttca aaggccaaca tttttttaaa caaaatggga ggggttaatg
     5401 gaatatagaa ttgtcatata tatttgttta ttcgtgcaat gctaatatag taactcagct
     5461 gtcctttgac ttgtcactgt gctgagtgga ttcctctaga actctggatt ccattgattg
     5521 ggcccaggcc acggtggaat aataacagag ggaagttaaa tgccacagag cttagcactg
     5581 agcttccttg aaggacttaa atcagtttag aagatgaaga aagccgatgg agaaatttaa
     5641 agattagttt tggaagctgt actctagcta tcgaacaatc aagggaatgc acctatcagc
     5701 tacaaagaac agccagacag ctgggttttc ctttcctttt ataaatgttt ctgtgttgtg
     5761 tcaaaatgat ttctggtgat ttaaactaac agataatcac agccgctgtc caaatccata
     5821 gtgtttaaaa attacaaaat gaaaaaaaaa aaccacttca ttacctgtga agactgtgtc
     5881 tgtgttttta actatttctt gtacaaatat atgaaaactt ttatgaggag actggtgcca
     5941 cgtagctgaa taatggggaa agggatcttc tgttcgtaaa aaccttagca gtgttaccaa
     6001 ctctacagta tatatataaa aataattaaa acgttacaaa gcgacagcta tgctacattt
     6061 gttttgtgtg aatctaaccg gacttaacct cctgagtgcc tggcttattt tgaaacattc
     6121 ttttcattga ccattgataa tgctgcaaat cagaaatgta catacttcat ttacaacagg
     6181 gttcttttta tacttttgta gattctcata catgtcacac acatggttgt ctttatgtaa
     6241 cttaattttt ttcatctgca ggtgccattt tcataataaa cttctcttgg atttgttact
     6301 a
//
