LOCUS       XM_039078157            6305 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X6, mRNA.
ACCESSION   XM_039078157
VERSION     XM_039078157.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078157.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6305
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 33 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             397..3261
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X6"
                     /protein_id="XP_038934085.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGL
                     SQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETP
                     EPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSH
                     GRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRITDYMDLTP
                     VDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAI
                     NAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGI
                     TEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSF
                     EHSDFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQPCESLTSDSAKDSDSATEAG
                     AQASSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIK
                     TEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGAL
                     HVTIPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPLSASPRDKHPGGGAGSGGSG
                     PGTSNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAE
                     VTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGSAVSAAS
                     LTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 ccccctcccc ttcttctctc agctgggctc gcgcggcgct gctagagcag ccagtgaaag
       61 caacatcctg gaaagagggg ggagcaacag tgccccccaa aagggagaaa aggccccacc
      121 ctgacacgtt ttgctgtttg caagtccctc gcacacaccc ccccccgcac ctcctcctcg
      181 ccaccacccc cccacctcag cccgctgcgc gcacatcaaa gcgcctctcc gccgcgcaca
      241 gtggccgcgg ctcactaatg ggattgcagg ctggtgcctg gctccgctgc tgccgccgcc
      301 gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagaccccgc cagtccgagc
      361 ccagagcaga cgcgcctggg gctccaagcc gcggcgatga tccgaatctt tccggatttc
      421 agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc ggccggtgcg
      481 ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca gggcatcacc
      541 tcctaccagc agcgaataac tgcccagcat cctctgccca accaatcaga atgtaggaaa
      601 atctacagat atgacggaat ctactgtgaa tctacctacc agaatttaca agcactgaga
      661 aaggagaaat ccagagatgc tgctcgctcc cgccggggaa aagaaaactt tgagttctat
      721 gaattggcca agctgttgcc tcttcctgcc gccatcacca gccagctcga caaggcgtcc
      781 atcattcgac ttacaattag ttatctcaag atgagggact ttgccaacca aggggaccct
      841 ccatggaatc tgaggatgga aggccctcca ccaaacacct ctgtaaaagg tgcacaacga
      901 aggcggagcc cgagtgcact ggccattgaa gtatttgaag cacatttggg aagccacatt
      961 ttgcagtccc tggatggctt cgtatttgca ctaaatcaag aaggaaaatt tttgtacatt
     1021 tctgaaaccg tctctatcta cctaggcctc tcacaagtgg agctgacagg cagcagcgtc
     1081 tttgactatg tccaccctgg ggaccacgtg gagatggcag agcagctggg catgaagctc
     1141 ccgcctgggc ggggcctcct ctcgcagggc accacagagg acgcggccag ttcggcatct
     1201 tcctcctctc agtcagagac ccctgagcca gtggagacaa ccagccccgg tctgctaact
     1261 actgacaaca cccttgaacg gtcctttttc atccgaatga aatctactct gaccaaacgc
     1321 ggagtgcaca tcaagtcgtc gggatataag gtgatccaca taacaggccg gcttcgcctc
     1381 agagtgtcgc tgtcccacgg gaggaccgtc cccagccaaa tcatgggtct cgtggttgtg
     1441 gctcatgcct tgcctccccc tacgatcaat gaagtcagaa ttgactgcca tatgttcgtc
     1501 actcgagtaa acatggacct caatatcatt tactgtgaaa ataggattac tgactacatg
     1561 gatctgactc ctgtagacat cgtagggaaa agatgctacc acttcatcca tgccgaagac
     1621 gtggaaggca tcaggcacag tcacctggac ttgctgaata agggtcagtg tgtgaccaag
     1681 tactatcgct ggatgcagaa gaatggaggt tacatctgga tacagtctag cgccaccata
     1741 gccattaatg cgaagaacgc gaatgagaag aacatcatct gggtgaatta tcttctcagc
     1801 aatccagagt acaaggacac acccatggac attgcgcaac tcccacattt gccagagaaa
     1861 gcttcagaat cctcagagac atccgactca gagtcagact ctaaagacac ctcaggtatt
     1921 acagaggaca acgagaactc caagtccgac gagaagggca atcagtccga aaacagcgaa
     1981 gatccagagc ctgaccgcaa gaagtcaggc agcgcgtgcg acaacgacat gaactgcaac
     2041 gacgacggtc acagctccag caacccggac agccgtgaca gcgacgacag cttcgagcac
     2101 tcggactttg aacaccccaa ggcggccgag gacggcttcg gcgcgctggg ctccatgcag
     2161 atcaaagtgg agcgctacgt ggagagcgag gcagatctgc ggctgcagcc ctgcgagtcc
     2221 ctcacgtcgg acagcgccaa ggactcagac agcgcgacag aggcgggcgc gcaggcgtcc
     2281 agcaagcacc agaagcgcaa gcggcggcgg aaacggcaga agggcggcag caccagtcgc
     2341 cggcgcctgt ccagcgcgtc cagcccaggc ctggacgccg gtcttgtgga gcctccgcgg
     2401 ctgctgtctt cgccgcacag cgcttcggtg ctcaagatca agacagagat cgccgaaccc
     2461 atcaacttcg acaacgacag cagcatctgg aactacccac ccaaccggga gatctccagg
     2521 aacgagtccc catacagcat gaccaagccc cccacctccg agcacttccc atccccccag
     2581 ggccagggag gcagcagcgg aggcggggga gcgctacacg tgaccatccc cgactcggtc
     2641 ctcaccccac cgggcgctga tggcactgct ggccgcaaga ctcagttcag cggaacagcc
     2701 ccggtggcct ctgatccact gtcgcccccg ctctcggcgt ccccgcggga caagcaccct
     2761 ggaggcgggg cggggagtgg tgggagtggc cctggtacgt ccaactcctt gctgtacact
     2821 ggggacctgg aggctctgca gaggttgcaa gcgggcaatg tcgtgcttcc gctggtacac
     2881 cgggtgaccg ggaccctggc ggccaccagc acagccgcac agagggtcta caccacaggc
     2941 accatccgct acgcaccggc tgaggtgacc ctggccatgc agggcaacct gctacccaat
     3001 gcgcatgctg ttaacttcgt ggacgttaac agcccaggct tcggcctcga ccccaagacg
     3061 cccatggaga tgctctacca ccacgtgcac cgactcaaca tgtcaggacc atttggcagc
     3121 gccgtgagcg cggccagcct cacacagatg ccaggtggca acgtgttcac cacggctgag
     3181 ggactcttct ccacgctgcc cttcccggtc tacagcaacg gaatccacgc ggcacagact
     3241 ctggagcgca aggaggactg agcgggcccc actcaggagg catcgtcgtt ttcgtttaga
     3301 cctttcattc tagcactttg aatttgagct ggccagcgtc ttctcgcaac acggtggccc
     3361 cattccaccc ccctctttct ttcagtggac ttattctttc ttgtaaagac gtttattttt
     3421 tgccttcaga gggtcagatg accggttgcc tgccattttg tcttctaaga tgtgtgttgg
     3481 gttgtttggc tttcctttgc atctttatta agatgtcttt aatgtgtata tgcctctgcc
     3541 atagaatact cagtcttgtg gtcaagagat ttctcaagtg acaaccattg ggtttttctt
     3601 cctaaagatc ttgatatgat caagatggaa agacaagcat aaatgattgt gccctgtttg
     3661 actaagtcaa atgaaatggg gtgggtggtt tttttgtttt cctgttccta attcctttga
     3721 aaatagggaa atagtatttt agaattttat gcagaattta attcttttta tgattaagat
     3781 tttaagattt ttcttacttg cacataaaat aatttgggtt cttaaactta atttctggcc
     3841 tgtgactaga attttttttt taaaaaaaaa aaacaaagtt ggactaagtg ttaattactg
     3901 aaacattaac ttaatttcta aaaccatggt gctatcattt attaatctat aatgtcttca
     3961 tacaaaatac agctcccggg ctggattttg gaaaagaaaa tgtgttctgt cctggtctgg
     4021 agtcccgttg ctacagtcag tctccttggt tagttaagac agagccctca ttaacatttg
     4081 ctgcagaact taaaaagttg ttttacctcc caactaacaa acatagcctc actttcaatt
     4141 ttatgggtca gtaaagccct gttcaaaggg ggctttcgga caactcagac tgatctgagg
     4201 aacagttgaa gtacatactg ccatttttga gattcttttt tccttactca gtctaactga
     4261 ggctgatttt tcacaacttc agtaacactt cagagtaaaa ggaggaggag aaatatttaa
     4321 cacgctcttt gtttatttgg ggttttttgt ttgtttgttt gtttctattt ctgctaagaa
     4381 aaaaacaggt tgtattgggg gggggagtgc tgatttgatg gaatttattt ccctttgatt
     4441 cttatttgag ttgaaaccaa caagttttta aaactaaaga atgggttaat aagcttcaga
     4501 cagattaact gcaactgaaa accgcacatt caatgaaaaa agagaaaaaa aggaaaaaag
     4561 aaaaaggaaa agaaaaaaga gcctattttg tcttcgttgc cagaaatcag tgtggtgtca
     4621 aacactccaa gtgactgtcc agtgtcgact cttctcccac ttcatttatg gcagcatcca
     4681 atcccagatg tgagaactgt gacgtgtgca gcgtgtagtg tccttggccg tgggtcccat
     4741 tgcagtttct gtgtgttcct atatgcagtg tatgctaagc tactgtagtc gttttgtccc
     4801 cgtcttctcc gtgctctgtc tctagtggag tggcacagtc ccattcctgc agtcctagtg
     4861 aatcggtgac tcttgggggt tagtgggttt gtgtggtggc ctttccctgt gatgtcaccc
     4921 atatgcttct attgtctgcg aatcctgtct tacttttcca aatcactgct gtttcctttg
     4981 ctgttgtata ctctccctgc ctcccctggt ctttccctgt ctcccctttc tctcctctgc
     5041 ttcccttccc tgatacccca aatctatgtc attctcagag ataaaaaaga aaaaaaaaga
     5101 ctcttaacta gctcaaggtt aatggagcca tctttcccac aacggaattc tgggtctgac
     5161 tttctctgtg gagtactaca cagcactgaa gaataatgct cagatatatt gactaaattg
     5221 atgccatgca gcctcagctg ttaacattcc cagagtccct tgtgctctac ctataagcag
     5281 tgggtgcttt tctttgcttt tctttcaggt tggctgatgg agcagtatat aaagcaatta
     5341 ccagttaaac agaaaattat ttcaaaggcc aacatttttt taaacaaaat gggaggggtt
     5401 aatggaatat agaattgtca tatatatttg tttattcgtg caatgctaat atagtaactc
     5461 agctgtcctt tgacttgtca ctgtgctgag tggattcctc tagaactctg gattccattg
     5521 attgggccca ggccacggtg gaataataac agagggaagt taaatgccac agagcttagc
     5581 actgagcttc cttgaaggac ttaaatcagt ttagaagatg aagaaagccg atggagaaat
     5641 ttaaagatta gttttggaag ctgtactcta gctatcgaac aatcaaggga atgcacctat
     5701 cagctacaaa gaacagccag acagctgggt tttcctttcc ttttataaat gtttctgtgt
     5761 tgtgtcaaaa tgatttctgg tgatttaaac taacagataa tcacagccgc tgtccaaatc
     5821 catagtgttt aaaaattaca aaatgaaaaa aaaaaaccac ttcattacct gtgaagactg
     5881 tgtctgtgtt tttaactatt tcttgtacaa atatatgaaa acttttatga ggagactggt
     5941 gccacgtagc tgaataatgg ggaaagggat cttctgttcg taaaaacctt agcagtgtta
     6001 ccaactctac agtatatata taaaaataat taaaacgtta caaagcgaca gctatgctac
     6061 atttgttttg tgtgaatcta accggactta acctcctgag tgcctggctt attttgaaac
     6121 attcttttca ttgaccattg ataatgctgc aaatcagaaa tgtacatact tcatttacaa
     6181 cagggttctt tttatacttt tgtagattct catacatgtc acacacatgg ttgtctttat
     6241 gtaacttaat ttttttcatc tgcaggtgcc attttcataa taaacttctc ttggatttgt
     6301 tacta
//
