LOCUS       XM_039078155            6347 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X4, mRNA.
ACCESSION   XM_039078155
VERSION     XM_039078155.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078155.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6347
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6347
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 21 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             397..3303
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X4"
                     /protein_id="XP_038934083.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGIQMWKSELCMRKTPCEGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQ
                     EGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGT
                     TEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGY
                     KVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDL
                     NIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWM
                     QKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASE
                     SSETSDSESDSKDTSEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGH
                     SSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQPCESLT
                     SDSAKDSDSATEAGAQASSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGLVEPPR
                     LLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPS
                     PQGQGGSSGGGGALHVTIPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPLSASPR
                     DKHPGGGAGSGGSGPGTSNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQ
                     RVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRL
                     NMSGPFGSAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 ccccctcccc ttcttctctc agctgggctc gcgcggcgct gctagagcag ccagtgaaag
       61 caacatcctg gaaagagggg ggagcaacag tgccccccaa aagggagaaa aggccccacc
      121 ctgacacgtt ttgctgtttg caagtccctc gcacacaccc ccccccgcac ctcctcctcg
      181 ccaccacccc cccacctcag cccgctgcgc gcacatcaaa gcgcctctcc gccgcgcaca
      241 gtggccgcgg ctcactaatg ggattgcagg ctggtgcctg gctccgctgc tgccgccgcc
      301 gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagaccccgc cagtccgagc
      361 ccagagcaga cgcgcctggg gctccaagcc gcggcgatga tccgaatctt tccggatttc
      421 agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc ggccggtgcg
      481 ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca gggcatcacc
      541 tcctaccagc agcgaataac tgcccagcat cctctgccca accaatcaga atgtaggaaa
      601 atctacagat atgacggaat ctactgtgaa tctacctacc agaatttaca agcactgaga
      661 aaggagaaat ccagagatgc tgctcgctcc cgccggggaa aagaaaactt tgagttctat
      721 gaattggcca agctgttgcc tcttcctgcc gccatcacca gccagctcga caaggcgtcc
      781 atcattcgac ttacaattag ttatctcaag atgagggact ttgccaacca aggggaccct
      841 ccatggaatc tgaggatgga aggccctcca ccaaacacct ctgtaaaagg gattcaaatg
      901 tggaaatctg aactctgcat gagaaagaca ccatgtgaag gtgcacaacg aaggcggagc
      961 ccgagtgcac tggccattga agtatttgaa gcacatttgg gaagccacat tttgcagtcc
     1021 ctggatggct tcgtatttgc actaaatcaa gaaggaaaat ttttgtacat ttctgaaacc
     1081 gtctctatct acctaggcct ctcacaagtg gagctgacag gcagcagcgt ctttgactat
     1141 gtccaccctg gggaccacgt ggagatggca gagcagctgg gcatgaagct cccgcctggg
     1201 cggggcctcc tctcgcaggg caccacagag gacgcggcca gttcggcatc ttcctcctct
     1261 cagtcagaga cccctgagcc agtggagaca accagccccg gtctgctaac tactgacaac
     1321 acccttgaac ggtccttttt catccgaatg aaatctactc tgaccaaacg cggagtgcac
     1381 atcaagtcgt cgggatataa ggtgatccac ataacaggcc ggcttcgcct cagagtgtcg
     1441 ctgtcccacg ggaggaccgt ccccagccaa atcatgggtc tcgtggttgt ggctcatgcc
     1501 ttgcctcccc ctacgatcaa tgaagtcaga attgactgcc atatgttcgt cactcgagta
     1561 aacatggacc tcaatatcat ttactgtgaa aataggatta ctgactacat ggatctgact
     1621 cctgtagaca tcgtagggaa aagatgctac cacttcatcc atgccgaaga cgtggaaggc
     1681 atcaggcaca gtcacctgga cttgctgaat aagggtcagt gtgtgaccaa gtactatcgc
     1741 tggatgcaga agaatggagg ttacatctgg atacagtcta gcgccaccat agccattaat
     1801 gcgaagaacg cgaatgagaa gaacatcatc tgggtgaatt atcttctcag caatccagag
     1861 tacaaggaca cacccatgga cattgcgcaa ctcccacatt tgccagagaa agcttcagaa
     1921 tcctcagaga catccgactc agagtcagac tctaaagaca cctcagagga caacgagaac
     1981 tccaagtccg acgagaaggg caatcagtcc gaaaacagcg aagatccaga gcctgaccgc
     2041 aagaagtcag gcagcgcgtg cgacaacgac atgaactgca acgacgacgg tcacagctcc
     2101 agcaacccgg acagccgtga cagcgacgac agcttcgagc actcggactt tgaacacccc
     2161 aaggcggccg aggacggctt cggcgcgctg ggctccatgc agatcaaagt ggagcgctac
     2221 gtggagagcg aggcagatct gcggctgcag ccctgcgagt ccctcacgtc ggacagcgcc
     2281 aaggactcag acagcgcgac agaggcgggc gcgcaggcgt ccagcaagca ccagaagcgc
     2341 aagcggcggc ggaaacggca gaagggcggc agcaccagtc gccggcgcct gtccagcgcg
     2401 tccagcccag gcctggacgc cggtcttgtg gagcctccgc ggctgctgtc ttcgccgcac
     2461 agcgcttcgg tgctcaagat caagacagag atcgccgaac ccatcaactt cgacaacgac
     2521 agcagcatct ggaactaccc acccaaccgg gagatctcca ggaacgagtc cccatacagc
     2581 atgaccaagc cccccacctc cgagcacttc ccatcccccc agggccaggg aggcagcagc
     2641 ggaggcgggg gagcgctaca cgtgaccatc cccgactcgg tcctcacccc accgggcgct
     2701 gatggcactg ctggccgcaa gactcagttc agcggaacag ccccggtggc ctctgatcca
     2761 ctgtcgcccc cgctctcggc gtccccgcgg gacaagcacc ctggaggcgg ggcggggagt
     2821 ggtgggagtg gccctggtac gtccaactcc ttgctgtaca ctggggacct ggaggctctg
     2881 cagaggttgc aagcgggcaa tgtcgtgctt ccgctggtac accgggtgac cgggaccctg
     2941 gcggccacca gcacagccgc acagagggtc tacaccacag gcaccatccg ctacgcaccg
     3001 gctgaggtga ccctggccat gcagggcaac ctgctaccca atgcgcatgc tgttaacttc
     3061 gtggacgtta acagcccagg cttcggcctc gaccccaaga cgcccatgga gatgctctac
     3121 caccacgtgc accgactcaa catgtcagga ccatttggca gcgccgtgag cgcggccagc
     3181 ctcacacaga tgccaggtgg caacgtgttc accacggctg agggactctt ctccacgctg
     3241 cccttcccgg tctacagcaa cggaatccac gcggcacaga ctctggagcg caaggaggac
     3301 tgagcgggcc ccactcagga ggcatcgtcg ttttcgttta gacctttcat tctagcactt
     3361 tgaatttgag ctggccagcg tcttctcgca acacggtggc cccattccac ccccctcttt
     3421 ctttcagtgg acttattctt tcttgtaaag acgtttattt tttgccttca gagggtcaga
     3481 tgaccggttg cctgccattt tgtcttctaa gatgtgtgtt gggttgtttg gctttccttt
     3541 gcatctttat taagatgtct ttaatgtgta tatgcctctg ccatagaata ctcagtcttg
     3601 tggtcaagag atttctcaag tgacaaccat tgggtttttc ttcctaaaga tcttgatatg
     3661 atcaagatgg aaagacaagc ataaatgatt gtgccctgtt tgactaagtc aaatgaaatg
     3721 gggtgggtgg tttttttgtt ttcctgttcc taattccttt gaaaataggg aaatagtatt
     3781 ttagaatttt atgcagaatt taattctttt tatgattaag attttaagat ttttcttact
     3841 tgcacataaa ataatttggg ttcttaaact taatttctgg cctgtgacta gaattttttt
     3901 tttaaaaaaa aaaaacaaag ttggactaag tgttaattac tgaaacatta acttaatttc
     3961 taaaaccatg gtgctatcat ttattaatct ataatgtctt catacaaaat acagctcccg
     4021 ggctggattt tggaaaagaa aatgtgttct gtcctggtct ggagtcccgt tgctacagtc
     4081 agtctccttg gttagttaag acagagccct cattaacatt tgctgcagaa cttaaaaagt
     4141 tgttttacct cccaactaac aaacatagcc tcactttcaa ttttatgggt cagtaaagcc
     4201 ctgttcaaag ggggctttcg gacaactcag actgatctga ggaacagttg aagtacatac
     4261 tgccattttt gagattcttt tttccttact cagtctaact gaggctgatt tttcacaact
     4321 tcagtaacac ttcagagtaa aaggaggagg agaaatattt aacacgctct ttgtttattt
     4381 ggggtttttt gtttgtttgt ttgtttctat ttctgctaag aaaaaaacag gttgtattgg
     4441 gggggggagt gctgatttga tggaatttat ttccctttga ttcttatttg agttgaaacc
     4501 aacaagtttt taaaactaaa gaatgggtta ataagcttca gacagattaa ctgcaactga
     4561 aaaccgcaca ttcaatgaaa aaagagaaaa aaaggaaaaa agaaaaagga aaagaaaaaa
     4621 gagcctattt tgtcttcgtt gccagaaatc agtgtggtgt caaacactcc aagtgactgt
     4681 ccagtgtcga ctcttctccc acttcattta tggcagcatc caatcccaga tgtgagaact
     4741 gtgacgtgtg cagcgtgtag tgtccttggc cgtgggtccc attgcagttt ctgtgtgttc
     4801 ctatatgcag tgtatgctaa gctactgtag tcgttttgtc cccgtcttct ccgtgctctg
     4861 tctctagtgg agtggcacag tcccattcct gcagtcctag tgaatcggtg actcttgggg
     4921 gttagtgggt ttgtgtggtg gcctttccct gtgatgtcac ccatatgctt ctattgtctg
     4981 cgaatcctgt cttacttttc caaatcactg ctgtttcctt tgctgttgta tactctccct
     5041 gcctcccctg gtctttccct gtctcccctt tctctcctct gcttcccttc cctgataccc
     5101 caaatctatg tcattctcag agataaaaaa gaaaaaaaaa gactcttaac tagctcaagg
     5161 ttaatggagc catctttccc acaacggaat tctgggtctg actttctctg tggagtacta
     5221 cacagcactg aagaataatg ctcagatata ttgactaaat tgatgccatg cagcctcagc
     5281 tgttaacatt cccagagtcc cttgtgctct acctataagc agtgggtgct tttctttgct
     5341 tttctttcag gttggctgat ggagcagtat ataaagcaat taccagttaa acagaaaatt
     5401 atttcaaagg ccaacatttt tttaaacaaa atgggagggg ttaatggaat atagaattgt
     5461 catatatatt tgtttattcg tgcaatgcta atatagtaac tcagctgtcc tttgacttgt
     5521 cactgtgctg agtggattcc tctagaactc tggattccat tgattgggcc caggccacgg
     5581 tggaataata acagagggaa gttaaatgcc acagagctta gcactgagct tccttgaagg
     5641 acttaaatca gtttagaaga tgaagaaagc cgatggagaa atttaaagat tagttttgga
     5701 agctgtactc tagctatcga acaatcaagg gaatgcacct atcagctaca aagaacagcc
     5761 agacagctgg gttttccttt ccttttataa atgtttctgt gttgtgtcaa aatgatttct
     5821 ggtgatttaa actaacagat aatcacagcc gctgtccaaa tccatagtgt ttaaaaatta
     5881 caaaatgaaa aaaaaaaacc acttcattac ctgtgaagac tgtgtctgtg tttttaacta
     5941 tttcttgtac aaatatatga aaacttttat gaggagactg gtgccacgta gctgaataat
     6001 ggggaaaggg atcttctgtt cgtaaaaacc ttagcagtgt taccaactct acagtatata
     6061 tataaaaata attaaaacgt tacaaagcga cagctatgct acatttgttt tgtgtgaatc
     6121 taaccggact taacctcctg agtgcctggc ttattttgaa acattctttt cattgaccat
     6181 tgataatgct gcaaatcaga aatgtacata cttcatttac aacagggttc tttttatact
     6241 tttgtagatt ctcatacatg tcacacacat ggttgtcttt atgtaactta atttttttca
     6301 tctgcaggtg ccattttcat aataaacttc tcttggattt gttacta
//
