LOCUS       XM_039078154            6353 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X3, mRNA.
ACCESSION   XM_039078154
VERSION     XM_039078154.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078154.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6353
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             397..3309
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X3"
                     /protein_id="XP_038934082.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFAL
                     NQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQ
                     GTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSS
                     GYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNM
                     DLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYR
                     WMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKA
                     SESSETSDSESDSKDTSEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDD
                     GHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQPCES
                     LTSDSAKDSDSATEAGAQASSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGLVEP
                     PRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHF
                     PSPQGQGGSSGGGGALHVTIPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPLSAS
                     PRDKHPGGGAGSGGSGPGTSNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTA
                     AQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVH
                     RLNMSGPFGSAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 ccccctcccc ttcttctctc agctgggctc gcgcggcgct gctagagcag ccagtgaaag
       61 caacatcctg gaaagagggg ggagcaacag tgccccccaa aagggagaaa aggccccacc
      121 ctgacacgtt ttgctgtttg caagtccctc gcacacaccc ccccccgcac ctcctcctcg
      181 ccaccacccc cccacctcag cccgctgcgc gcacatcaaa gcgcctctcc gccgcgcaca
      241 gtggccgcgg ctcactaatg ggattgcagg ctggtgcctg gctccgctgc tgccgccgcc
      301 gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagaccccgc cagtccgagc
      361 ccagagcaga cgcgcctggg gctccaagcc gcggcgatga tccgaatctt tccggatttc
      421 agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc ggccggtgcg
      481 ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca gggcatcacc
      541 tcctaccagc agcgaataac tgcccagcat cctctgccca accaatcaga atgtaggaaa
      601 atctacagat atgacggaat ctactgtgaa tctacctacc agaatttaca agcactgaga
      661 aaggagaaat ccagagatgc tgctcgctcc cgccggggaa aagaaaactt tgagttctat
      721 gaattggcca agctgttgcc tcttcctgcc gccatcacca gccagctcga caaggcgtcc
      781 atcattcgac ttacaattag ttatctcaag atgagggact ttgccaacca aggggaccct
      841 ccatggaatc tgaggatgga aggccctcca ccaaacacct ctgtaaaagg gattcaaatg
      901 tggaaatctg aactctgcat gagaaagaca ccatgtgaag ttataggtgc acaacgaagg
      961 cggagcccga gtgcactggc cattgaagta tttgaagcac atttgggaag ccacattttg
     1021 cagtccctgg atggcttcgt atttgcacta aatcaagaag gaaaattttt gtacatttct
     1081 gaaaccgtct ctatctacct aggcctctca caagtggagc tgacaggcag cagcgtcttt
     1141 gactatgtcc accctgggga ccacgtggag atggcagagc agctgggcat gaagctcccg
     1201 cctgggcggg gcctcctctc gcagggcacc acagaggacg cggccagttc ggcatcttcc
     1261 tcctctcagt cagagacccc tgagccagtg gagacaacca gccccggtct gctaactact
     1321 gacaacaccc ttgaacggtc ctttttcatc cgaatgaaat ctactctgac caaacgcgga
     1381 gtgcacatca agtcgtcggg atataaggtg atccacataa caggccggct tcgcctcaga
     1441 gtgtcgctgt cccacgggag gaccgtcccc agccaaatca tgggtctcgt ggttgtggct
     1501 catgccttgc ctccccctac gatcaatgaa gtcagaattg actgccatat gttcgtcact
     1561 cgagtaaaca tggacctcaa tatcatttac tgtgaaaata ggattactga ctacatggat
     1621 ctgactcctg tagacatcgt agggaaaaga tgctaccact tcatccatgc cgaagacgtg
     1681 gaaggcatca ggcacagtca cctggacttg ctgaataagg gtcagtgtgt gaccaagtac
     1741 tatcgctgga tgcagaagaa tggaggttac atctggatac agtctagcgc caccatagcc
     1801 attaatgcga agaacgcgaa tgagaagaac atcatctggg tgaattatct tctcagcaat
     1861 ccagagtaca aggacacacc catggacatt gcgcaactcc cacatttgcc agagaaagct
     1921 tcagaatcct cagagacatc cgactcagag tcagactcta aagacacctc agaggacaac
     1981 gagaactcca agtccgacga gaagggcaat cagtccgaaa acagcgaaga tccagagcct
     2041 gaccgcaaga agtcaggcag cgcgtgcgac aacgacatga actgcaacga cgacggtcac
     2101 agctccagca acccggacag ccgtgacagc gacgacagct tcgagcactc ggactttgaa
     2161 caccccaagg cggccgagga cggcttcggc gcgctgggct ccatgcagat caaagtggag
     2221 cgctacgtgg agagcgaggc agatctgcgg ctgcagccct gcgagtccct cacgtcggac
     2281 agcgccaagg actcagacag cgcgacagag gcgggcgcgc aggcgtccag caagcaccag
     2341 aagcgcaagc ggcggcggaa acggcagaag ggcggcagca ccagtcgccg gcgcctgtcc
     2401 agcgcgtcca gcccaggcct ggacgccggt cttgtggagc ctccgcggct gctgtcttcg
     2461 ccgcacagcg cttcggtgct caagatcaag acagagatcg ccgaacccat caacttcgac
     2521 aacgacagca gcatctggaa ctacccaccc aaccgggaga tctccaggaa cgagtcccca
     2581 tacagcatga ccaagccccc cacctccgag cacttcccat ccccccaggg ccagggaggc
     2641 agcagcggag gcgggggagc gctacacgtg accatccccg actcggtcct caccccaccg
     2701 ggcgctgatg gcactgctgg ccgcaagact cagttcagcg gaacagcccc ggtggcctct
     2761 gatccactgt cgcccccgct ctcggcgtcc ccgcgggaca agcaccctgg aggcggggcg
     2821 gggagtggtg ggagtggccc tggtacgtcc aactccttgc tgtacactgg ggacctggag
     2881 gctctgcaga ggttgcaagc gggcaatgtc gtgcttccgc tggtacaccg ggtgaccggg
     2941 accctggcgg ccaccagcac agccgcacag agggtctaca ccacaggcac catccgctac
     3001 gcaccggctg aggtgaccct ggccatgcag ggcaacctgc tacccaatgc gcatgctgtt
     3061 aacttcgtgg acgttaacag cccaggcttc ggcctcgacc ccaagacgcc catggagatg
     3121 ctctaccacc acgtgcaccg actcaacatg tcaggaccat ttggcagcgc cgtgagcgcg
     3181 gccagcctca cacagatgcc aggtggcaac gtgttcacca cggctgaggg actcttctcc
     3241 acgctgccct tcccggtcta cagcaacgga atccacgcgg cacagactct ggagcgcaag
     3301 gaggactgag cgggccccac tcaggaggca tcgtcgtttt cgtttagacc tttcattcta
     3361 gcactttgaa tttgagctgg ccagcgtctt ctcgcaacac ggtggcccca ttccaccccc
     3421 ctctttcttt cagtggactt attctttctt gtaaagacgt ttattttttg ccttcagagg
     3481 gtcagatgac cggttgcctg ccattttgtc ttctaagatg tgtgttgggt tgtttggctt
     3541 tcctttgcat ctttattaag atgtctttaa tgtgtatatg cctctgccat agaatactca
     3601 gtcttgtggt caagagattt ctcaagtgac aaccattggg tttttcttcc taaagatctt
     3661 gatatgatca agatggaaag acaagcataa atgattgtgc cctgtttgac taagtcaaat
     3721 gaaatggggt gggtggtttt tttgttttcc tgttcctaat tcctttgaaa atagggaaat
     3781 agtattttag aattttatgc agaatttaat tctttttatg attaagattt taagattttt
     3841 cttacttgca cataaaataa tttgggttct taaacttaat ttctggcctg tgactagaat
     3901 ttttttttta aaaaaaaaaa acaaagttgg actaagtgtt aattactgaa acattaactt
     3961 aatttctaaa accatggtgc tatcatttat taatctataa tgtcttcata caaaatacag
     4021 ctcccgggct ggattttgga aaagaaaatg tgttctgtcc tggtctggag tcccgttgct
     4081 acagtcagtc tccttggtta gttaagacag agccctcatt aacatttgct gcagaactta
     4141 aaaagttgtt ttacctccca actaacaaac atagcctcac tttcaatttt atgggtcagt
     4201 aaagccctgt tcaaaggggg ctttcggaca actcagactg atctgaggaa cagttgaagt
     4261 acatactgcc atttttgaga ttcttttttc cttactcagt ctaactgagg ctgatttttc
     4321 acaacttcag taacacttca gagtaaaagg aggaggagaa atatttaaca cgctctttgt
     4381 ttatttgggg ttttttgttt gtttgtttgt ttctatttct gctaagaaaa aaacaggttg
     4441 tattgggggg gggagtgctg atttgatgga atttatttcc ctttgattct tatttgagtt
     4501 gaaaccaaca agtttttaaa actaaagaat gggttaataa gcttcagaca gattaactgc
     4561 aactgaaaac cgcacattca atgaaaaaag agaaaaaaag gaaaaaagaa aaaggaaaag
     4621 aaaaaagagc ctattttgtc ttcgttgcca gaaatcagtg tggtgtcaaa cactccaagt
     4681 gactgtccag tgtcgactct tctcccactt catttatggc agcatccaat cccagatgtg
     4741 agaactgtga cgtgtgcagc gtgtagtgtc cttggccgtg ggtcccattg cagtttctgt
     4801 gtgttcctat atgcagtgta tgctaagcta ctgtagtcgt tttgtccccg tcttctccgt
     4861 gctctgtctc tagtggagtg gcacagtccc attcctgcag tcctagtgaa tcggtgactc
     4921 ttgggggtta gtgggtttgt gtggtggcct ttccctgtga tgtcacccat atgcttctat
     4981 tgtctgcgaa tcctgtctta cttttccaaa tcactgctgt ttcctttgct gttgtatact
     5041 ctccctgcct cccctggtct ttccctgtct cccctttctc tcctctgctt cccttccctg
     5101 ataccccaaa tctatgtcat tctcagagat aaaaaagaaa aaaaaagact cttaactagc
     5161 tcaaggttaa tggagccatc tttcccacaa cggaattctg ggtctgactt tctctgtgga
     5221 gtactacaca gcactgaaga ataatgctca gatatattga ctaaattgat gccatgcagc
     5281 ctcagctgtt aacattccca gagtcccttg tgctctacct ataagcagtg ggtgcttttc
     5341 tttgcttttc tttcaggttg gctgatggag cagtatataa agcaattacc agttaaacag
     5401 aaaattattt caaaggccaa cattttttta aacaaaatgg gaggggttaa tggaatatag
     5461 aattgtcata tatatttgtt tattcgtgca atgctaatat agtaactcag ctgtcctttg
     5521 acttgtcact gtgctgagtg gattcctcta gaactctgga ttccattgat tgggcccagg
     5581 ccacggtgga ataataacag agggaagtta aatgccacag agcttagcac tgagcttcct
     5641 tgaaggactt aaatcagttt agaagatgaa gaaagccgat ggagaaattt aaagattagt
     5701 tttggaagct gtactctagc tatcgaacaa tcaagggaat gcacctatca gctacaaaga
     5761 acagccagac agctgggttt tcctttcctt ttataaatgt ttctgtgttg tgtcaaaatg
     5821 atttctggtg atttaaacta acagataatc acagccgctg tccaaatcca tagtgtttaa
     5881 aaattacaaa atgaaaaaaa aaaaccactt cattacctgt gaagactgtg tctgtgtttt
     5941 taactatttc ttgtacaaat atatgaaaac ttttatgagg agactggtgc cacgtagctg
     6001 aataatgggg aaagggatct tctgttcgta aaaaccttag cagtgttacc aactctacag
     6061 tatatatata aaaataatta aaacgttaca aagcgacagc tatgctacat ttgttttgtg
     6121 tgaatctaac cggacttaac ctcctgagtg cctggcttat tttgaaacat tcttttcatt
     6181 gaccattgat aatgctgcaa atcagaaatg tacatacttc atttacaaca gggttctttt
     6241 tatacttttg tagattctca tacatgtcac acacatggtt gtctttatgt aacttaattt
     6301 ttttcatctg caggtgccat tttcataata aacttctctt ggatttgtta cta
//
