LOCUS       XM_039078152            6363 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 3 (Npas3),
            transcript variant X1, mRNA.
ACCESSION   XM_039078152
VERSION     XM_039078152.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078152.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6363
                     /gene="Npas3"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
     CDS             398..3319
                     /gene="Npas3"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X1"
                     /protein_id="XP_038934080.1"
                     /db_xref="GeneID:299016"
                     /db_xref="RGD:1307181"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFAL
                     NQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQ
                     GTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERSFFIRMKSTLTKRGVHIKSS
                     GYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNM
                     DLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYR
                     WMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKA
                     SESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNC
                     NDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGSMQIKVERYVESEADLRLQP
                     CESLTSDSAKDSDSATEAGAQASSKHQKRKRRRKRQKGGSTSRRRLSSASSPGLDAGL
                     VEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTS
                     EHFPSPQGQGGSSGGGGALHVTIPDSVLTPPGADGTAGRKTQFSGTAPVASDPLSPPL
                     SASPRDKHPGGGAGSGGSGPGTSNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAAT
                     STAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYH
                     HVHRLNMSGPFGSAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKE
                     D"
ORIGIN      
        1 accccctccc cttcttctct cagctgggct cgcgcggcgc tgctagagca gccagtgaaa
       61 gcaacatcct ggaaagaggg gggagcaaca gtgcccccca aaagggagaa aaggccccac
      121 cctgacacgt tttgctgttt gcaagtccct cgcacacacc cccccccgca cctcctcctc
      181 gccaccaccc ccccacctca gcccgctgcg cgcacatcaa agcgcctctc cgccgcgcac
      241 agtggccgcg gctcactaat gggattgcag gctggtgcct ggctccgctg ctgccgccgc
      301 cgctcgcgcc gctgctgccg ccgccgcccg aacccgagcc cgagaccccg ccagtccgag
      361 cccagagcag acgcgcctgg ggctccaagc cgcggcgatg atccgaatct ttccggattt
      421 cagcgtgcag gtgacggccg cggcggccgg cggggcagcc gctggggtac cggccggtgc
      481 gggcatgggg agggccggcg ccgcggccaa cggcaccccg cagaacgtcc agggcatcac
      541 ctcctaccag cagcgaataa ctgcccagca tcctctgccc aaccaatcag aatgtaggaa
      601 aatctacaga tatgacggaa tctactgtga atctacctac cagaatttac aagcactgag
      661 aaaggagaaa tccagagatg ctgctcgctc ccgccgggga aaagaaaact ttgagttcta
      721 tgaattggcc aagctgttgc ctcttcctgc cgccatcacc agccagctcg acaaggcgtc
      781 catcattcga cttacaatta gttatctcaa gatgagggac tttgccaacc aaggggaccc
      841 tccatggaat ctgaggatgg aaggccctcc accaaacacc tctgtaaaag ggattcaaat
      901 gtggaaatct gaactctgca tgagaaagac accatgtgaa gttataggtg cacaacgaag
      961 gcggagcccg agtgcactgg ccattgaagt atttgaagca catttgggaa gccacatttt
     1021 gcagtccctg gatggcttcg tatttgcact aaatcaagaa ggaaaatttt tgtacatttc
     1081 tgaaaccgtc tctatctacc taggcctctc acaagtggag ctgacaggca gcagcgtctt
     1141 tgactatgtc caccctgggg accacgtgga gatggcagag cagctgggca tgaagctccc
     1201 gcctgggcgg ggcctcctct cgcagggcac cacagaggac gcggccagtt cggcatcttc
     1261 ctcctctcag tcagagaccc ctgagccagt ggagacaacc agccccggtc tgctaactac
     1321 tgacaacacc cttgaacggt cctttttcat ccgaatgaaa tctactctga ccaaacgcgg
     1381 agtgcacatc aagtcgtcgg gatataaggt gatccacata acaggccggc ttcgcctcag
     1441 agtgtcgctg tcccacggga ggaccgtccc cagccaaatc atgggtctcg tggttgtggc
     1501 tcatgccttg cctcccccta cgatcaatga agtcagaatt gactgccata tgttcgtcac
     1561 tcgagtaaac atggacctca atatcattta ctgtgaaaat aggattactg actacatgga
     1621 tctgactcct gtagacatcg tagggaaaag atgctaccac ttcatccatg ccgaagacgt
     1681 ggaaggcatc aggcacagtc acctggactt gctgaataag ggtcagtgtg tgaccaagta
     1741 ctatcgctgg atgcagaaga atggaggtta catctggata cagtctagcg ccaccatagc
     1801 cattaatgcg aagaacgcga atgagaagaa catcatctgg gtgaattatc ttctcagcaa
     1861 tccagagtac aaggacacac ccatggacat tgcgcaactc ccacatttgc cagagaaagc
     1921 ttcagaatcc tcagagacat ccgactcaga gtcagactct aaagacacct caggtattac
     1981 agaggacaac gagaactcca agtccgacga gaagggcaat cagtccgaaa acagcgaaga
     2041 tccagagcct gaccgcaaga agtcaggcag cgcgtgcgac aacgacatga actgcaacga
     2101 cgacggtcac agctccagca acccggacag ccgtgacagc gacgacagct tcgagcactc
     2161 ggactttgaa caccccaagg cggccgagga cggcttcggc gcgctgggct ccatgcagat
     2221 caaagtggag cgctacgtgg agagcgaggc agatctgcgg ctgcagccct gcgagtccct
     2281 cacgtcggac agcgccaagg actcagacag cgcgacagag gcgggcgcgc aggcgtccag
     2341 caagcaccag aagcgcaagc ggcggcggaa acggcagaag ggcggcagca ccagtcgccg
     2401 gcgcctgtcc agcgcgtcca gcccaggcct ggacgccggt cttgtggagc ctccgcggct
     2461 gctgtcttcg ccgcacagcg cttcggtgct caagatcaag acagagatcg ccgaacccat
     2521 caacttcgac aacgacagca gcatctggaa ctacccaccc aaccgggaga tctccaggaa
     2581 cgagtcccca tacagcatga ccaagccccc cacctccgag cacttcccat ccccccaggg
     2641 ccagggaggc agcagcggag gcgggggagc gctacacgtg accatccccg actcggtcct
     2701 caccccaccg ggcgctgatg gcactgctgg ccgcaagact cagttcagcg gaacagcccc
     2761 ggtggcctct gatccactgt cgcccccgct ctcggcgtcc ccgcgggaca agcaccctgg
     2821 aggcggggcg gggagtggtg ggagtggccc tggtacgtcc aactccttgc tgtacactgg
     2881 ggacctggag gctctgcaga ggttgcaagc gggcaatgtc gtgcttccgc tggtacaccg
     2941 ggtgaccggg accctggcgg ccaccagcac agccgcacag agggtctaca ccacaggcac
     3001 catccgctac gcaccggctg aggtgaccct ggccatgcag ggcaacctgc tacccaatgc
     3061 gcatgctgtt aacttcgtgg acgttaacag cccaggcttc ggcctcgacc ccaagacgcc
     3121 catggagatg ctctaccacc acgtgcaccg actcaacatg tcaggaccat ttggcagcgc
     3181 cgtgagcgcg gccagcctca cacagatgcc aggtggcaac gtgttcacca cggctgaggg
     3241 actcttctcc acgctgccct tcccggtcta cagcaacgga atccacgcgg cacagactct
     3301 ggagcgcaag gaggactgag cgggccccac tcaggaggca tcgtcgtttt cgtttagacc
     3361 tttcattcta gcactttgaa tttgagctgg ccagcgtctt ctcgcaacac ggtggcccca
     3421 ttccaccccc ctctttcttt cagtggactt attctttctt gtaaagacgt ttattttttg
     3481 ccttcagagg gtcagatgac cggttgcctg ccattttgtc ttctaagatg tgtgttgggt
     3541 tgtttggctt tcctttgcat ctttattaag atgtctttaa tgtgtatatg cctctgccat
     3601 agaatactca gtcttgtggt caagagattt ctcaagtgac aaccattggg tttttcttcc
     3661 taaagatctt gatatgatca agatggaaag acaagcataa atgattgtgc cctgtttgac
     3721 taagtcaaat gaaatggggt gggtggtttt tttgttttcc tgttcctaat tcctttgaaa
     3781 atagggaaat agtattttag aattttatgc agaatttaat tctttttatg attaagattt
     3841 taagattttt cttacttgca cataaaataa tttgggttct taaacttaat ttctggcctg
     3901 tgactagaat ttttttttta aaaaaaaaaa acaaagttgg actaagtgtt aattactgaa
     3961 acattaactt aatttctaaa accatggtgc tatcatttat taatctataa tgtcttcata
     4021 caaaatacag ctcccgggct ggattttgga aaagaaaatg tgttctgtcc tggtctggag
     4081 tcccgttgct acagtcagtc tccttggtta gttaagacag agccctcatt aacatttgct
     4141 gcagaactta aaaagttgtt ttacctccca actaacaaac atagcctcac tttcaatttt
     4201 atgggtcagt aaagccctgt tcaaaggggg ctttcggaca actcagactg atctgaggaa
     4261 cagttgaagt acatactgcc atttttgaga ttcttttttc cttactcagt ctaactgagg
     4321 ctgatttttc acaacttcag taacacttca gagtaaaagg aggaggagaa atatttaaca
     4381 cgctctttgt ttatttgggg ttttttgttt gtttgtttgt ttctatttct gctaagaaaa
     4441 aaacaggttg tattgggggg gggagtgctg atttgatgga atttatttcc ctttgattct
     4501 tatttgagtt gaaaccaaca agtttttaaa actaaagaat gggttaataa gcttcagaca
     4561 gattaactgc aactgaaaac cgcacattca atgaaaaaag agaaaaaaag gaaaaaagaa
     4621 aaaggaaaag aaaaaagagc ctattttgtc ttcgttgcca gaaatcagtg tggtgtcaaa
     4681 cactccaagt gactgtccag tgtcgactct tctcccactt catttatggc agcatccaat
     4741 cccagatgtg agaactgtga cgtgtgcagc gtgtagtgtc cttggccgtg ggtcccattg
     4801 cagtttctgt gtgttcctat atgcagtgta tgctaagcta ctgtagtcgt tttgtccccg
     4861 tcttctccgt gctctgtctc tagtggagtg gcacagtccc attcctgcag tcctagtgaa
     4921 tcggtgactc ttgggggtta gtgggtttgt gtggtggcct ttccctgtga tgtcacccat
     4981 atgcttctat tgtctgcgaa tcctgtctta cttttccaaa tcactgctgt ttcctttgct
     5041 gttgtatact ctccctgcct cccctggtct ttccctgtct cccctttctc tcctctgctt
     5101 cccttccctg ataccccaaa tctatgtcat tctcagagat aaaaaagaaa aaaaaagact
     5161 cttaactagc tcaaggttaa tggagccatc tttcccacaa cggaattctg ggtctgactt
     5221 tctctgtgga gtactacaca gcactgaaga ataatgctca gatatattga ctaaattgat
     5281 gccatgcagc ctcagctgtt aacattccca gagtcccttg tgctctacct ataagcagtg
     5341 ggtgcttttc tttgcttttc tttcaggttg gctgatggag cagtatataa agcaattacc
     5401 agttaaacag aaaattattt caaaggccaa cattttttta aacaaaatgg gaggggttaa
     5461 tggaatatag aattgtcata tatatttgtt tattcgtgca atgctaatat agtaactcag
     5521 ctgtcctttg acttgtcact gtgctgagtg gattcctcta gaactctgga ttccattgat
     5581 tgggcccagg ccacggtgga ataataacag agggaagtta aatgccacag agcttagcac
     5641 tgagcttcct tgaaggactt aaatcagttt agaagatgaa gaaagccgat ggagaaattt
     5701 aaagattagt tttggaagct gtactctagc tatcgaacaa tcaagggaat gcacctatca
     5761 gctacaaaga acagccagac agctgggttt tcctttcctt ttataaatgt ttctgtgttg
     5821 tgtcaaaatg atttctggtg atttaaacta acagataatc acagccgctg tccaaatcca
     5881 tagtgtttaa aaattacaaa atgaaaaaaa aaaaccactt cattacctgt gaagactgtg
     5941 tctgtgtttt taactatttc ttgtacaaat atatgaaaac ttttatgagg agactggtgc
     6001 cacgtagctg aataatgggg aaagggatct tctgttcgta aaaaccttag cagtgttacc
     6061 aactctacag tatatatata aaaataatta aaacgttaca aagcgacagc tatgctacat
     6121 ttgttttgtg tgaatctaac cggacttaac ctcctgagtg cctggcttat tttgaaacat
     6181 tcttttcatt gaccattgat aatgctgcaa atcagaaatg tacatacttc atttacaaca
     6241 gggttctttt tatacttttg tagattctca tacatgtcac acacatggtt gtctttatgt
     6301 aacttaattt ttttcatctg caggtgccat tttcataata aacttctctt ggatttgtta
     6361 cta
//
