LOCUS       XM_039083587            4029 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 2 (Npas2),
            transcript variant X7, mRNA.
ACCESSION   XM_039083587
VERSION     XM_039083587.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083587.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4029
                     /gene="Npas2"
                     /note="neuronal PAS domain protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 15 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:316351"
                     /db_xref="RGD:1309681"
     CDS             1023..2753
                     /gene="Npas2"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 2 isoform
                     X4"
                     /protein_id="XP_038939515.1"
                     /db_xref="GeneID:316351"
                     /db_xref="RGD:1309681"
                     /translation="MCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG
                     YDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPE
                     FIVCTHSVVSYADVRVERRQELALEDPPTEAMHPSALKEKDSSLEPQPHFNALDMGAS
                     GLTSSPSPSASSRSSHKSSHTAMSEPTSTPTKLMAENSTTALPRSATLPQELPVQGLS
                     QAATMPAPLLSSSSCDLAKQLLPQSLPQTVLQSPPAPVTQFSAQFSMFQTIKDQLEQR
                     TRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSGAQRPAAQQPLQQR
                     PSAPSQPPLVVNTPLPGQITSTQVTNQHLLRESNVMSAQGPKPIRSSQLLPASSRSLS
                     SLPSQFSSTASVLPPGLSLTTVAPTPQDTSQCQPSPDFGHDRQLRLLLSQPIQPMMPG
                     SCDARQPSEVSRTGRQVKYAQSQVTFPSPDSHPTSSSAPTPVLLMGQAVLHPGFPASQ
                     PSPLQPTQVQQQPPPYLQAPTSLHSEQPDSLLLSTFSQQPAPLGYAATQPTQPQPPRP
                     SRRVSRLSES"
ORIGIN      
        1 cacggccgag cagagaaaac agggctaggc tgacaggttg gtggcaaatc cttccgagac
       61 gtgaggaagc cagttgtata attagatgtg ttcttccaat tatttaaatt gaaataggta
      121 attgaatcct taattaaagg gctttaaact acctcgagat ctgaagtgcc aaagagttat
      181 tttctaagcg ctaaatatga ctgggaaggc ccagggtgca gcgtgcgcat gcgtgttgcc
      241 tctggaacat gcgagagtcc cacccttcaa gtaagaagtc atttcacact tcaccagccg
      301 tgtagaaggg agcttcctct ccttgcttcc tcttcaaggt cttcctcttg acctctaacc
      361 cctctttgcc tctattaaag cattcaccct gatttttcta tcaccatgga tcaggtccgc
      421 agatgcctca ggctttgggt gggccaaact tgtttggaaa agcagacact cagtttgggg
      481 cccaggttca ggctaccagt aatgtccctt ggcaaggatt gaccagggta ggggtgaggg
      541 tcagattttc acctttgaag ccttcgaagt tataaaagtg cagataaaac tgttggaagg
      601 tagccaggac aagtggaaag tctgcaaaat cccactgaac aaccaccacg ccagtctccg
      661 ccgctcttga gcaagcctta ggtgggggtt tcccacttcc ccttctgctc cctttccaca
      721 ggaaatcagg gagaaggccc ttgctggcag cacgtgggct cagcagccaa ggggtggctc
      781 aaaccaggtg catcagtaga gggtgaagaa ggacccctcc ttcttaagtc cctagcgggt
      841 ccttggaaat ttgcctccga ggtctcagta ttccgaaaag cgtcaagaga attttatgag
      901 tgcctagccc ctcctgtaat ggctttgaca acaccctttc aagaccctgc cgcgtgcccc
      961 tggggaagga ggtctgcttc atcgccacgg tgcgcctggc aacaccacag ttcttaaagg
     1021 aaatgtgtgt agctgacgaa cctttagagg aattcacttc gaggcatagc ttggaatgga
     1081 aatttttatt tctggatcac agagcccctc caatcatagg atacctgccc tttgaagtac
     1141 ttggcacgtc aggctatgac tactaccaca ttgatgacct ggagctcctg gccaggtgcc
     1201 accagcactt gatgcagttt ggcaaaggga agtcgtgttg ttaccggttt ctaaccaaag
     1261 gacagcagtg gatttggttg caaacccact actacatcac ctaccaccag tggaactcca
     1321 agcccgagtt catcgtgtgc acacactcgg tggtcagtta cgcagatgtc cgagtggaaa
     1381 ggagacagga gctggctctg gaagatccac ccacagaagc catgcacccc tctgcactga
     1441 aggaaaagga ctcaagccta gagcctcagc cgcactttaa tgcacttgac atgggtgcct
     1501 caggtcttac cagcagtcct tcgccatcag catcctcgag gagttcccac aagtcctcac
     1561 acacagccat gtcagaaccc acctccactc caaccaagct gatggctgag aacagcacca
     1621 cagctttgcc aagatcagcc accctacccc aggagttacc agtgcagggg ctcagccagg
     1681 cagccacaat gccagctcct ctgctttcct catcatcctg tgaccttgcc aagcagctcc
     1741 tgcctcagtc cctgcctcag acggtcctgc agagtccacc tgctccagtg acacagtttt
     1801 cagcacaatt tagcatgttc cagaccataa aagaccagtt ggagcagagg acacggatcc
     1861 tgcaggccaa cattcggtgg cagcaggaag agcttcacaa gatccaggaa caactctgcc
     1921 tggtccagga ctccaacgtc cagatgtttc tacagcagcc agcggtgtct ctgagcttca
     1981 gcggtgccca gagaccggca gctcagcagc cactgcaaca aaggccatct gcaccgtctc
     2041 agcccccgct tgtggtcaac actccactgc cggggcagat cacatccacc caagtcacaa
     2101 accagcacct gctcagagaa tcgaatgtga tgtccgccca gggtccaaaa ccaataagaa
     2161 gctcccagtt gctgcctgcc agcagccgtt cactgagcag cctgccgtcc cagttcagca
     2221 gcacagcgtc cgtgctccca ccaggcctga gcctcaccac tgtcgctccc acccctcagg
     2281 acaccagcca gtgccagccc agccctgact tcggccatga tcggcagctc aggctgttgc
     2341 tgagccaacc catccagcct atgatgcctg ggtcttgtga tgccaggcag ccctcagaag
     2401 tcagcaggac tggacggcaa gtcaaatatg cacagagcca agtgacgttt ccaagtcctg
     2461 actcccaccc caccagcagc agcgccccca ccccggtcct gttgatgggg caggccgtgc
     2521 tccatcccgg cttccccgca tcccagccat cacccctgca accaacacag gtacaacagc
     2581 agccaccacc ctatctacag gcaccaacat ctctgcacag tgaacagccg gactcgctcc
     2641 ttctctccac cttctcccag cagccagcac ctctgggcta tgcagccaca cagcctacac
     2701 agccgcaacc cccacgccct tcccgcaggg tcagccggct gtcagagtcc taaggtctcc
     2761 agcagccatc ccggtagtgc cctgacactg gagtccagaa gcaaacagct ttaaccaatg
     2821 gaaaacgggg ttggccgtgg gagatgggaa gaagcggttg tgtgactttg gcgcaccctg
     2881 tgtacatttc agaactcctg atggtaacat gtctgaagtg tggcacttgc agaatgggga
     2941 aagaacagga ttattggcca tgatttcctt gccctgggct tctcgggcat ccgctacagc
     3001 catacagaca ggaactaagt gccctgtatg ggcactgctt cctggtctat ttgcagaggt
     3061 ggtacctctc gctgcctcca ggggagagcg ctccaagtac tctaccgact gacacaggtc
     3121 ctaagcccta gcgggccttg actctcttga tggtctttcc tttacagtca aggactaagt
     3181 taaaggtctt tggagagagt ataaagagat tatttttcat tatttttaaa tggttgtttt
     3241 ttttttaatt tgcacacctg tgcacaaggg aaataacagg cactttcggg ggtttttgtt
     3301 tgttcgttcg tttgtttgtt tgtttgtttt aataataagg tcccatggct tcattgggaa
     3361 tacacaataa tagaaacagt cccaccaatc agatagcgaa gcctgttatt aatgaagcta
     3421 cagatccaca cccttggcct aaaccctagc ggactgaggc tctcgggcac caggccctac
     3481 aggggtgttt tccttcctaa atagaacact ggactcttcc tgttaatttc gctgatagta
     3541 actacaaaag tggattcagc aaagcacaat ctcacaatga ttccgaattc ctgagagaca
     3601 tcttagacta tgagggaaga gggcccacaa gcaggggtac tccgcaggcc gaatctccca
     3661 ggaaaccagg catgtgatgg ccttcctagt gaggtaggcc accatgactt ccggtatatc
     3721 ttccccgatg attccgaaga tcggattttc cttttcagaa tgcactttgc tttttttttc
     3781 tttatgtttt gttacatcga ggtgtttcta aagagaagat tttatgtaat tataagagga
     3841 agtgtagtga attgtacagc tgttgtaata atgacctatt tctataaaaa aataaaattg
     3901 tatggattat gtgtaaatta ttttgtatct gagagaccag ttccattcac aaatatgaaa
     3961 gtataaaggt ttccttgtgt ttttctgtga gtgaaacatt ttgtaataaa ttaacaagtt
     4021 tgtacaatt
//
