LOCUS       XM_039083584            4315 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuronal PAS domain protein 2 (Npas2),
            transcript variant X3, mRNA.
ACCESSION   XM_039083584
VERSION     XM_039083584.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083584.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4315
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4315
                     /gene="Npas2"
                     /note="neuronal PAS domain protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 16 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:316351"
                     /db_xref="RGD:1309681"
     CDS             472..3039
                     /gene="Npas2"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 2 isoform
                     X1"
                     /protein_id="XP_038939512.1"
                     /db_xref="GeneID:316351"
                     /db_xref="RGD:1309681"
                     /translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKLD
                     KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTT
                     DGSIIYVSDSITPLLGHLPGTEEESMKGLHRSRTLRLCLRSEVHPVERASFSLYFLLQ
                     SDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNP
                     KEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQF
                     LKEMCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLEL
                     LARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSY
                     ADVRVERRQELALEDPPTEAMHPSALKEKDSSLEPQPHFNALDMGASGLTSSPSPSAS
                     SRSSHKSSHTAMSEPTSTPTKLMAENSTTALPRSATLPQELPVQGLSQAATMPAPLLS
                     SSSCDLAKQLLPQSLPQTVLQSPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQ
                     QEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSGAQRPAAQQPLQQRPSAPSQPPLVV
                     NTPLPGQITSTQVTNQHLLRESNVMSAQGPKPIRSSQLLPASSRSLSSLPSQFSSTAS
                     VLPPGLSLTTVAPTPQDTSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVS
                     RTGRQVKYAQSQVTFPSPDSHPTSSSAPTPVLLMGQAVLHPGFPASQPSPLQPTQVQQ
                     QPPPYLQAPTSLHSEQPDSLLLSTFSQQPAPLGYAATQPTQPQPPRPSRRVSRLSES"
ORIGIN      
        1 ggcggggagg cggcagcggt ccccggctct gcgcgcccaa gagtttgcgg cgcgagcggc
       61 gggctttccc gcaggacccg agggacccgc gcagcgtccg cggagccccg agaccccggc
      121 ggcagcggcg agagcagcgc ctcccgccgc cgcccgggaa aagctccctg agcccgcctg
      181 ccgcccggct ccccgcggcg gcgggaggcg cgtctccccg gcccagtcgg tgcccggcct
      241 ggcggggccg ccccggcccg ctcggagact tcaccctcca gccctttcca atgcagctgc
      301 atgccacgat cttcacccac cctgaaggac ccaggaacct gagtcttagc tactgctata
      361 agctgaatgc ggctcccaaa gcttgtaagt tggagagttc atcttcaagt ctgtagacca
      421 atggaaccca gagatggagc ttcttaaagg caaaactgca tagaaactct aatggacgaa
      481 gatgagaagg atagagcaaa gagagcctct cgaaacaagt ctgagaagaa gcgtcgggac
      541 cagttcaatg ttctcatcaa agagctcagc tccatgctcc caggcaacac tcggaaactg
      601 gacaaaacaa ctgtgctgga gaaggtcatc ggatttctgc agaaacacaa tgaagtctca
      661 gcacaaacag aaatctgtga catccagcag gactggaagc cttcattcct cagtaacgaa
      721 gaattcaccc agctgatgtt ggaggcgtta gatggcttcg tcattgttgt gacaacggac
      781 ggcagcatca tctatgtgtc cgacagcatc acgcctctcc tcggacattt accgggtaca
      841 gaggaggagt ccatgaaggg tcttcacaga tcaagaactc tgaggctctg cctccgctct
      901 gaagttcacc cagtcgagcg tgcgtctttt tctctttatt ttctcttgca gtcggatgtc
      961 atggatcaga acttgttaaa tttccttcca gaacaagaac attccgaagt ttataaaatc
     1021 ctttcctccc atatgcttgt gacggattcc ccctccccag aattcctaaa atctgacaac
     1081 gatttagagt tttattgtca tcttctgaga ggcagcttga acccaaagga atttccaact
     1141 tacgaataca taaaatttgt aggaaatttt cgctcttaca acaatgtgcc tagcccctcc
     1201 tgtaatggct ttgacaacac cctttcaaga ccctgccgcg tgcccctggg gaaggaggtc
     1261 tgcttcatcg ccacggtgcg cctggcaaca ccacagttct taaaggaaat gtgtgtagct
     1321 gacgaacctt tagaggaatt cacttcgagg catagcttgg aatggaaatt tttatttctg
     1381 gatcacagag cccctccaat cataggatac ctgccctttg aagtacttgg cacgtcaggc
     1441 tatgactact accacattga tgacctggag ctcctggcca ggtgccacca gcacttgatg
     1501 cagtttggca aagggaagtc gtgttgttac cggtttctaa ccaaaggaca gcagtggatt
     1561 tggttgcaaa cccactacta catcacctac caccagtgga actccaagcc cgagttcatc
     1621 gtgtgcacac actcggtggt cagttacgca gatgtccgag tggaaaggag acaggagctg
     1681 gctctggaag atccacccac agaagccatg cacccctctg cactgaagga aaaggactca
     1741 agcctagagc ctcagccgca ctttaatgca cttgacatgg gtgcctcagg tcttaccagc
     1801 agtccttcgc catcagcatc ctcgaggagt tcccacaagt cctcacacac agccatgtca
     1861 gaacccacct ccactccaac caagctgatg gctgagaaca gcaccacagc tttgccaaga
     1921 tcagccaccc taccccagga gttaccagtg caggggctca gccaggcagc cacaatgcca
     1981 gctcctctgc tttcctcatc atcctgtgac cttgccaagc agctcctgcc tcagtccctg
     2041 cctcagacgg tcctgcagag tccacctgct ccagtgacac agttttcagc acaatttagc
     2101 atgttccaga ccataaaaga ccagttggag cagaggacac ggatcctgca ggccaacatt
     2161 cggtggcagc aggaagagct tcacaagatc caggaacaac tctgcctggt ccaggactcc
     2221 aacgtccaga tgtttctaca gcagccagcg gtgtctctga gcttcagcgg tgcccagaga
     2281 ccggcagctc agcagccact gcaacaaagg ccatctgcac cgtctcagcc cccgcttgtg
     2341 gtcaacactc cactgccggg gcagatcaca tccacccaag tcacaaacca gcacctgctc
     2401 agagaatcga atgtgatgtc cgcccagggt ccaaaaccaa taagaagctc ccagttgctg
     2461 cctgccagca gccgttcact gagcagcctg ccgtcccagt tcagcagcac agcgtccgtg
     2521 ctcccaccag gcctgagcct caccactgtc gctcccaccc ctcaggacac cagccagtgc
     2581 cagcccagcc ctgacttcgg ccatgatcgg cagctcaggc tgttgctgag ccaacccatc
     2641 cagcctatga tgcctgggtc ttgtgatgcc aggcagccct cagaagtcag caggactgga
     2701 cggcaagtca aatatgcaca gagccaagtg acgtttccaa gtcctgactc ccaccccacc
     2761 agcagcagcg cccccacccc ggtcctgttg atggggcagg ccgtgctcca tcccggcttc
     2821 cccgcatccc agccatcacc cctgcaacca acacaggtac aacagcagcc accaccctat
     2881 ctacaggcac caacatctct gcacagtgaa cagccggact cgctccttct ctccaccttc
     2941 tcccagcagc cagcacctct gggctatgca gccacacagc ctacacagcc gcaaccccca
     3001 cgcccttccc gcagggtcag ccggctgtca gagtcctaag gtctccagca gccatcccgg
     3061 tagtgccctg acactggagt ccagaagcaa acagctttaa ccaatggaaa acggggttgg
     3121 ccgtgggaga tgggaagaag cggttgtgtg actttggcgc accctgtgta catttcagaa
     3181 ctcctgatgg taacatgtct gaagtgtggc acttgcagaa tggggaaaga acaggattat
     3241 tggccatgat ttccttgccc tgggcttctc gggcatccgc tacagccata cagacaggaa
     3301 ctaagtgccc tgtatgggca ctgcttcctg gtctatttgc agaggtggta cctctcgctg
     3361 cctccagggg agagcgctcc aagtactcta ccgactgaca caggtcctaa gccctagcgg
     3421 gccttgactc tcttgatggt ctttccttta cagtcaagga ctaagttaaa ggtctttgga
     3481 gagagtataa agagattatt tttcattatt tttaaatggt tgtttttttt ttaatttgca
     3541 cacctgtgca caagggaaat aacaggcact ttcgggggtt tttgtttgtt cgttcgtttg
     3601 tttgtttgtt tgttttaata ataaggtccc atggcttcat tgggaataca caataataga
     3661 aacagtccca ccaatcagat agcgaagcct gttattaatg aagctacaga tccacaccct
     3721 tggcctaaac cctagcggac tgaggctctc gggcaccagg ccctacaggg gtgttttcct
     3781 tcctaaatag aacactggac tcttcctgtt aatttcgctg atagtaacta caaaagtgga
     3841 ttcagcaaag cacaatctca caatgattcc gaattcctga gagacatctt agactatgag
     3901 ggaagagggc ccacaagcag gggtactccg caggccgaat ctcccaggaa accaggcatg
     3961 tgatggcctt cctagtgagg taggccacca tgacttccgg tatatcttcc ccgatgattc
     4021 cgaagatcgg attttccttt tcagaatgca ctttgctttt tttttcttta tgttttgtta
     4081 catcgaggtg tttctaaaga gaagatttta tgtaattata agaggaagtg tagtgaattg
     4141 tacagctgtt gtaataatga cctatttcta taaaaaaata aaattgtatg gattatgtgt
     4201 aaattatttt gtatctgaga gaccagttcc attcacaaat atgaaagtat aaaggtttcc
     4261 ttgtgttttt ctgtgagtga aacattttgt aataaattaa caagtttgta caatt
//
