LOCUS       XM_008759097            8836 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOVA alternative splicing regulator 2
            (Nova2), mRNA.
ACCESSION   XM_008759097
VERSION     XM_008759097.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427170.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008759097.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8836
                     /gene="Nova2"
                     /note="NOVA alternative splicing regulator 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 18 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     82 samples with support for all annotated introns"
                     /db_xref="GeneID:292681"
                     /db_xref="RGD:1308032"
     CDS             484..2154
                     /gene="Nova2"
                     /codon_start=1
                     /product="RNA-binding protein Nova-2"
                     /protein_id="XP_008757319.2"
                     /db_xref="GeneID:292681"
                     /db_xref="RGD:1308032"
                     /translation="MRMMAAGAVHGLFTASAAPQPPPPPPPPPPPQPQPPQQPSPPPQ
                     QPPPPPQPPQQQQPPPQAPPMEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVL
                     IPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAH
                     SFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVK
                     AVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNI
                     SYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPA
                     FSGTDLLAISTALNTLASYGYNTNSLSLGLNSAAASGVLAAVAAGANPAAAAAANLLA
                     SYTGDAGAGPGAGAAPPPPPPPGALGSFALAAAANGYLGAGAGGAAGAGGAPLVAAAA
                     AAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISK
                     KGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG"
ORIGIN      
        1 gggccaggac gctgtaggag cctagctgag aagatgctcg ggccagcaac caccaccacc
       61 agcccggtct ccgctgctgc cctcgcccgc cgcccccggg gcccccacta gcggtcacct
      121 ccgcttctta tctccggccc cccgccctga gcagggcctt gggagggggg ctcggcccct
      181 cgcatctgtg gggagatccc aagaaagggt acagagaggg tgtcctgtct acacctctgc
      241 accccactgg ctcagccaag tgcccggctt cggtgatctt tgagagacca ggaccccacc
      301 cctcagttct ccatcccaga ccacccccat accctctcca ccctgctttt ctccgtcctc
      361 cagctctgtc agcgctttcc cccccccagc cccctcccgc ttccctcccc gccgctcccc
      421 tcccccctcc tcgccgcccc ctccctcccc ctccttcccc tccccctcct ccgccccccc
      481 accatgagga tgatggccgc cggcgcggtg cacggcctct tcacggcctc cgcggccccg
      541 cagccgccgc cgcccccgcc gccgccgccg ccgccgcagc cccagcctcc ccagcagccg
      601 tcgccgccgc cacagcagcc gccgccgccg ccgcagccgc cgcagcagca gcagccgccg
      661 ccccaggccc cccccatgga gcccgaggcc ccggattccc gcaagagacc cctcgagaca
      721 ccccccgagg tggtctgcac caagcgcagc aacacgggag aggaaggcga gtacttcctg
      781 aaggtgctta tccccagcta cgcagccggc tcaatcatcg gcaaaggtgg ccagaccatc
      841 gtgcagctcc agaaggagac gggagccacc atcaagctat ctaagtccaa agacttctac
      901 ccaggaacta cagaacgggt atgcctagta cagggcacag cagaggcctt gaacgctgcc
      961 cacagcttta tcgcagaaaa ggtccgagaa atccctcaag cgatgaccaa gcctgaggtg
     1021 gtcaacatcc ttcaacccca aaccacgatg aaccccgaca gagccaagca ggccaagcta
     1081 atcgtcccca acagcacggc gggactgatc atcggtaagg gaggagcgac cgtgaaggcg
     1141 gtgatggaac agtccggcgc gtgggtgcag ctgtcgcaga agcccgaggg catcaacctg
     1201 caggagcgcg tggtgaccgt gagcggcgaa cccgagcagg tgcacaaggc cgtgagcgcc
     1261 atcgtgcaga aggtacagga agacccacag agcagcagct gcctcaacat cagctacgcc
     1321 aacgtggcgg ggcccgtggc caactccaat cccaccggct caccttacgc cagtccggcc
     1381 gacgtgctgc ccgccgcggc cgccgcctct gccgcagccg cctcgggtct actaggcccc
     1441 gcggggctgg cgggcgtggg cgccttcccc gccgcgctgc ccgccttctc gggcaccgac
     1501 ctgctggcaa tcagcacggc gctcaacacg ttggccagct acggctacaa caccaactcg
     1561 ctcagcctgg gcctcaactc ggccgccgcc tcgggcgtcc tggccgcggt agccgcaggg
     1621 gccaaccccg cggccgccgc cgcagccaac ctcctggcgt cctacacggg tgacgccggg
     1681 gcggggccgg gggcaggggc cgcaccgcca ccgccaccgc cccccggagc gctgggctcc
     1741 tttgctctgg ccgcggccgc caatggctac ctcggtgcgg gagcgggggg cgcggctgga
     1801 gcggggggcg cgcccctggt ggccgccgcg gctgcggccg gggctgccgg cggcttcctg
     1861 acggccgaga agctggcggc cgagagcgcc aaggagctgg tggagatcgc ggtgcccgag
     1921 aacctggtgg gggccatcct gggcaaaggg ggcaagacgc tggtggagta ccaggagctg
     1981 acgggcgcgc gcatccagat ctccaagaag ggcgagttcc tgcccggcac gcggaaccgg
     2041 cgggtcacca tcacgggcag ccccgcggcc acgcaagccg ctcaatacct catcagccag
     2101 cgggtcacct acgagcaggg ggtgagggct tcaaacccgc agaaagtggg atgaggcctg
     2161 tggtgtgcgt ccccaccccc tcccgcttct cctccctcct tttcctcctc tcccaactcc
     2221 cgccagactt cagcttggtg tgactcctgc ttggcttggg atggggctgg ggtaggcctg
     2281 gctgcaccct cccttctggt agtcataggc aggattgagt gacggctgag gagggggctt
     2341 ttgagccccc tccccagcct tgaactgacc ccctcctccc tccctgtgct tgacttgacc
     2401 tgacccacct ctcccggggt ccaggtctat gtgatatctg tatatattgc attttgttga
     2461 ttttaataga aaacaaagcg ttattttctc tttctttccc tccttttttt tccctttttt
     2521 actttttctt cttttttttg ataagaacct cccctccttt ataagatttt ttttttaaca
     2581 tatgggagga ggggaggaag ccttcaggtc acctggaatg aggtgcctct cccaaacaca
     2641 acatcctgcc tctctgattg cagttccaga acctggggaa gagacatgag taggaataga
     2701 ggtagctacc caggagtcag agctgaaatg aggggtttga aacatagaca ctccctcaga
     2761 cccgagcccc tgggattccg gtatttcctc agctcctcta ttcccctgca gtatttcctc
     2821 gagtggaagt gtaaccttct tcgttgagta gagatgttac tgctgggaat gactccagct
     2881 ctgggatgct tcaggtcctg tgaacactgc tgtgagaggc acagaagcag ctatagtttt
     2941 ttatggctct tcctagagga acaagggtcc gtgttgggat gtcactgaac caagtattta
     3001 cagggtgctt ccagtaactc cctatgatgt cctaggaagt atttcctcag aggccacttc
     3061 cagtaccggt tagagaaaaa tcatttcctg tgaggtcaca acaaaagccc tcaaaggtcg
     3121 cttctgtgat gccaggggca ggggcatgta cttcctgtgg aatctcgagg tcactccctg
     3181 tggcatcata gggattgaag catgcacttc ctgtgttgga cagcggccag tccctaagat
     3241 ccccttcttc cctctacact tcccccttgg tggatcaaca ccctgggtga gggggaatcc
     3301 ctagaaagaa tgggacttgg atctaacagg gaggattcta agggggaaaa aaactgtcag
     3361 ggtcatctcc atccaaatgt gccatctgtg aacttgcctt gagaagcaag actgggagcc
     3421 gaagctagtg aaaatgaatg gttgcaaaag cgcccccttc cccacccctg ccttttgtgt
     3481 gcatgcctgt gtctacgtgg tttcatttca ttgacggatg agccagatgt atggtggctc
     3541 tgtcaggcca gtgtgatctg gtgtagagtt cagtgagcct tgcaaagttt agggtatctc
     3601 gggctgaaat gtcttgtgtg gtctgccgaa tttgattggc ttggcggctt ccaggggctg
     3661 gtgtacgttg acggtcttga taggtcagaa gtgttgggtg tgtgctcagc cttagactcg
     3721 gaggagctag agtctctgga agcatgacaa accaggctac cctgggagtt gtcttgcgag
     3781 tggttcactt ggcatggtgg ctctggtcag ttctgaagac tgagatgtca gggcctgaaa
     3841 aacctagaga ctaggattgc ttagatatcc tcctgtccct tcccaccgcc ccctccctgt
     3901 tggagaactt caactttctc gaaccccaag cagggtcctc agagccctgg ctccatcatc
     3961 agcatctctg ggggagggac accccatgcc tacttccctc ctccatcccc ttcctaggtc
     4021 ttccagaccc tgctcttctc catggctttg gggatatctg gtctccttgt ttctattcct
     4081 acaaaggagc tgggaggaga gaaaccaccc agaccatgcc tagtacactc ctgaagcctg
     4141 ggagccccgc tacccgtgct agagagccac ccccaaatca aaatgtgaaa atccctagaa
     4201 agcaatagcc ttcgaggtac ctcgcactga ctacccctcc cccagccctt ccacaggaat
     4261 gggaggctgc agcttgagca ctggggtgac ttttttccat gtccttatcc ccccagtgag
     4321 gggcaggccc catttccttg acacaccccc atctcccacc tcctatcgct gctgccccct
     4381 tacccctaat ctccaccgtg agcccagatg gagattttag tgccaaaaca gttcttgata
     4441 ccattttgta catatcttct acagtttggg gctgttggga ttggaggtgg gggccggccc
     4501 acagggccat tgctcccctc cacctcttaa aggaccttac agtatttcat gtagctccac
     4561 ctgcatgtag gtagtaaagt atctagctgg aatcccctct caccctccca ccccccataa
     4621 aaccctcagg ccccatgagg aggggaagga acagggatga agcaaggtcc aggatgggta
     4681 ggtgggatag aaacaccgtt tgtcaatcat ctgtgtcctc cctggagcag cctgctttcc
     4741 acgagcccat tggctggagt ctgggtccac accctgcgtg acattcccgt gttctcaggg
     4801 atccgttacc ccaccagcca gggctatctg aaaggtagtt tgctagctta gtaaactggt
     4861 ccactcacca tgttggtgag gagccacaca cctccccacc cccattttac cccaggaaat
     4921 tccatcatct tccctgtccc ttgaaaatcc cttctgaaat ctaacctcag tcttttctgt
     4981 gctgtagttg gtccagaagg gatacgtaat gcaggccacg ggggagaatt attttaaaat
     5041 aatagtaata acaaagttca ttcccttcct ccccgccccc cactgcccgt tagccaatca
     5101 gatcgcaaag gatctgaccg gcctccttgc atcctgcttc ggcaccagta taggtgttta
     5161 agttagtaag tattgcctgc attgaattgt ctcatctacc ctccagcttc cgataccccc
     5221 gcccccgcat tctcctctct aaatcatttc tctgcctccc taaggcccac tgggttttcc
     5281 tctcgtggtt gcccctcccc cacggttctc tgtcctgtct ctacctttgt ctgtattctt
     5341 cccttcctga attctcgact ctttcattcc cccctttaaa agcaaaaagt gccaaacttc
     5401 ctcggaactg agccgatctg gggggggggg ggggaggatc ttagatagag gggaggaacc
     5461 acctctctta gaggggaggc cccttaagag gcaaagaaaa cactttcgga cgctgagcta
     5521 aattggatcc ccttcctcgt tcctctcacc ctgagttttt tcttagaatc tttataagaa
     5581 aaaaagaaaa agagaaaaaa aaaacatttt caactaaccc ctactttttt ggattcctct
     5641 cccccaaatt ccaccagcca aggagaaccc cttttgcctt tttctgggca aatccataga
     5701 aactggggat ggagagacaa actccactct cttttgctgg cccaatgggg gtggttgctg
     5761 gggagggacc tcaaagcatt tatgacaaga ggggttcgaa agtgccaaat ttcaccttct
     5821 tcatcctgtc ttgggcaggg ctctgagcca gcctgtccag tcatcagctt tgccgtctcc
     5881 cagccacctc tacatgggcg ggaaaatttt gccgcaataa ttagcagggc agggatcgga
     5941 aggcagggat tttgctgttt ctgtctgtac tggacttgga ggtgggaatt gtgggagcgt
     6001 ggcaagagtc ttacaaatgg ttggggactt atactcggga tattacggta ccacttgttt
     6061 ttcccccacg gtattttttt ttttttctct actcttgacc aaccaaaacc cttggaatgt
     6121 cggacccacc ccagttctgt ttcttcagcc cgtccctgtg gcccacacca tccttattac
     6181 tttatggcta gctggtctcc agctatttga aagaggagaa gaggttctcc cttgcatgga
     6241 ctcctgctgt ttcgagccta agataacagg ttaatttgca aaagcgttca ccagagcagc
     6301 ggtgaaggtg gcaatctagg cgtccaggat gctccactag gctgtacacc tgtcgaagag
     6361 ccagacaggc cttctgccca gtgcatctgc cccaagcgcc atccggaatt gaggccggcg
     6421 tcgtcaaaac ctgaactggt tgtcaccatg ggggaggaca gaatcgcaat acccaggtcg
     6481 gggggcagag aagcctggtt tacgccttgt ggagtgtagc caccgagcct tgctgtcccg
     6541 gccctctcca ccacagcggt ttcgaagtcc cagctggtgt gtccgttcca tccggtcccc
     6601 acagctctca ccagtggcgt agacgacctc ccgctgagtg gcaagaggga ggggaaagtc
     6661 tctggagggt ggtggcgaag actgctggtt tttaacccct tctcagacag tctaggacac
     6721 tcgtctcctt agaactagta cagggagacc ctcctccttc ctcccttccc cccactcccc
     6781 tcccaccccc acaaaaccac caacctctca tcttctaagt gactccatca ccaccggcca
     6841 ccactggaac ctgcggcctc attgctccag cccgccccac tcgaccgtca gactcgctcc
     6901 atcgaactct tttgattaac cctttctgtg ttcatcccac ggaaaacctg tgtgtccggc
     6961 agggaggcca ggggggtgga tgctaagggc agttgctacc tttcctccat ctcctcccag
     7021 tggccatgcc tccccatgcc atgcccccat tcctatccct cgccccttaa gatccgcctc
     7081 ccctgggggc acagggatct tctagaaata cctttgctgt ttgcctttgc aaaggcgggc
     7141 ctagggggcg tggcctcccc ttcggagcgc tcattctgtc ctccccgttg cccccaccca
     7201 ctccccacgc cttcattgta aatagtcact tttgtacttg gtttgagcca ggcgacgtgg
     7261 ggagtctcag tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc
     7321 tctctctccc ccccccattc tctctctctc ttctctgttt tttatttgtg ttggcatctc
     7381 aattactgga ggcatggtcc acatcccggt tcgatttggg agaaacccaa ggtgcgcccc
     7441 gccaaaatgt taaggatttt gagagaacag tattaactcc gacagggctg gctgggatgc
     7501 acaggtcccc cgaccgggag gagggagaag aagcctttgt tcttgagatc ctgtgaaatg
     7561 ggttcatcct ccaaggtccc tgaagaacct tgggggaact gagaattgag tttctcctcc
     7621 gcttcctctg ttggaggctg gttcaaaacg aatggctttg ggatggggct gtcttcggag
     7681 aactgactgc tgaattcttc ctgggacctg aagctaacct ctggtaggct tgttttcttg
     7741 caaagaggta gtcaaatgaa cgtcaaaggt ccctctccaa cccttaaagg aaaggtccaa
     7801 gccccgcggg ttggctcctg ttctgctgct actctgccgc attatagttt gggggtaggg
     7861 tgggcagtta agtggccatg cctccagttt ctccattcag ccccctctta actgatttcc
     7921 ttccatcctc ttcgaccagc gccgccgccc acttcctctc cgccacctcc agaagctctt
     7981 ggctggggtc accgcactct cttccctatc cccccatcgc catgcctggg ccatgcccac
     8041 ctctcccacc cactcaccca cccacccccc agtgtccgtt gtgtgaccta gtgcaccatg
     8101 tattagcttc catggacccc cacccaccca cccactcccc gctcccacca cacccctccc
     8161 cccacccctt ctccctcggc gacttcacct ttttttgccg cgataaacgt catctcagca
     8221 tctgtgtcta atgttgtctt ttttgcttgg catcacacac gccttcttaa cccatcccct
     8281 tccctttccc tcctccctgg cacctccacc ctcatcctca actcttttcc cctttgtccc
     8341 ccatccccca cccagggctg tgggcattta agggaggggg agggtgtgtt ctctgatttg
     8401 ggagaagaac taagagtaag tatggccgaa gacagtaagt gtttcaaggc tgaacttgtc
     8461 catccgatgt ccagtcctgg gaaccagggt caccaccagc cacacacaca cacagaaccc
     8521 acaggcagct ccaggacgcc catgtccaca gggagcacag ctcctcaagt ccagtagcac
     8581 caggatagcc ccggggccag gtgcttggag tgatgtaagg ccccacctca gatccttgag
     8641 attctgcccg tctgagccac caaccttgcc aactgtagaa tgaaaagggt ttttttttaa
     8701 atgttatttc tacatcaatt gtttatgctt gaatttaata catcattcac tttttaaaga
     8761 gtttattaag cacctactat gtgtaaggca ctgttctaag tgccagagtt agaaaaatga
     8821 actaaacaga cccaaa
//
