LOCUS       XM_039108548            6044 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nucleolar protein with MIF4G domain 1
            (Nom1), transcript variant X1, mRNA.
ACCESSION   XM_039108548
VERSION     XM_039108548.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108548.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6044
                     /gene="Nom1"
                     /note="nucleolar protein with MIF4G domain 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 73 ESTs, 2 long SRA reads, 1 Protein, and 86%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 235 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:682058"
                     /db_xref="RGD:1588109"
     CDS             1041..3563
                     /gene="Nom1"
                     /codon_start=1
                     /product="nucleolar MIF4G domain-containing protein 1
                     isoform X1"
                     /protein_id="XP_038964476.1"
                     /db_xref="GeneID:682058"
                     /db_xref="RGD:1588109"
                     /translation="MARTKCSGVRRGPGGGKGPLKRLRLAVEGFVRATSESEACENRS
                     AVARSRPGDRKSRKELRKKKRQLRKVRRLQRTVGSGSGDQEGNVGLNGGPETRPRIEM
                     RPTPAKATATPVKASAPSANTKASATQPKANSSYSKGTMTSTQAKAKGAPGKPGPATA
                     TARKRALLAANEEEDREIRKLERCLGLHKRKKGDGSSVPLSFARDGLDYILGALEYGR
                     SGGLYESSDEEEEGKVETGQTFLESDPESNSEESEEDPDSQVPQEDQEDVNSQKEGET
                     ESGTRGNKGNKKVRFAEVVEKSESSLEDDLEHQESHCVESGEKYIPPQLRSEETVDVQ
                     KKEELDRLKKHVKGLINRLSEPNMASISGQLEELYMAHSRKYMNDTLTAVLMDACVTT
                     STMPSRLMMEHVFLVSILHHTVGTEVGACFLEAVVKKFDDVYRDGGEGKELDNLFTMI
                     AHLYNFHVVQSLLIFDILKKLVGTFTERDIELILLMLKNVGFALRKDDALSLKELITE
                     AQAQAIGAGNKFQDQNRVRFMLETMLALKNNDMRKIPGYNPEPVEKLKKLQRALVRNA
                     SSGSETQLRISWDGILNAEQTGRWWIVGSAWSGTPMIENHHTHLQKPLAGTASSKMLE
                     LARKQRMNTDVRRNIFCTMMTSEDFLDAFEKLLKLGLKDQQEREIVHILMDCCLQEKT
                     YNPFYAFLASKFCAYERRFQMTFQFSIWDKFRDLENLSGTKFSNLVYLLTHLLKTKSL
                     PLSVLKVVEFSELDKPRVHFLRRVLTELLMETEDDDLVVIFSRVSSNPKLGMLREGLK
                     LFISHFLLKPAQPQQSAEKASLLRERAGLASKSLQGKAILRM"
ORIGIN      
        1 atttttctat gaatctagtc cctggatgat aagttcctgg tagccctgac tctgtgatac
       61 acaccaattc ccacccaaaa aatggacaac catgactatc tttgttatga cctgactaac
      121 tgcttttttt tttttgcttc tgtaacttgc ttatacaaat actcaaagtc ggttttgagt
      181 tgcctttacc acttaactag acagaacagt ccagttttcg cttgctttca tagatatcga
      241 aggtcttctt atgatttttt tccttaagaa aaaagaaaac tttcttatat ccgttcttca
      301 aagcaatctc aaatatggtt cagagactgt tcatcctgct agcaaataat caataaatct
      361 actttgattg agtccatggc cttttcccag gagtcccagc agaatcattg cattcatttt
      421 acaaagagac agactcttta ttccagaaat catccttctt aaaatgtggc cttcaggttc
      481 tgctccttaa aacataaaat tctatatatt caaagatata ttacagcatc atttctaata
      541 ttaaagtgtt ggaaataact gatcaggtgc aatgctgtgg gcctggagtt gtagctactt
      601 gggacactca gctgaggagt gcttagccca agaattcaag gtcagcctgg gctacagact
      661 gagaaagtat ctcaaaggaa aagaaaaaaa aaaccaaaaa tcaaaaaaca cagaaacagc
      721 gttgactgcc ttcccttggg taaactcgca tgcacgaaaa tacgagaatg tgtggaaaga
      781 ttatgataca gccatatgta gggtgatttc ctcatggcac cccaaaacaa gagcttcaaa
      841 ttttaaagga ctccattagt gtctgtgact gcagccctcc gaccagcaga ggggaccttc
      901 caccagtctc gacttttagt ccacagaagt tagcgtacgg aagtcccgcc cctgccggaa
      961 gtgatgccat tgaaaaatcc cggaagttac tggcgtctgt aggcgtgggg cctgctgtct
     1021 gtggtgtaga gcacaggttc atggctcgca cgaagtgtag cggcgtccgt cgcggtccgg
     1081 gcggtgggaa gggacccctg aaacggctac ggctggccgt ggaaggcttc gtgcgggcta
     1141 cctccgagag cgaagcctgc gagaatcgca gcgctgtggc gcgctcccgg cctggcgacc
     1201 gaaagagccg caaggagctt cgtaagaaga agcgacagct gaggaaagtg cggcgcctgc
     1261 agaggacagt aggctccgga tcaggggacc aagaagggaa tgtcggcctt aacggtggcc
     1321 cggaaactcg gccgcgcatt gagatgaggc cgacccccgc caaggctaca gcaacccctg
     1381 tcaaggccag tgctccctcc gctaacacca aggcctcggc gacccagcct aaggccaata
     1441 gttcctactc caagggtacc atgacttcaa ctcaggcaaa ggctaaaggt gctcccggaa
     1501 agcctggtcc tgccaccgcc actgcccgga agcgggcact tctagcggcc aatgaggagg
     1561 aggaccgaga gatcagaaag ctggaacgat gcctcggcct ccacaagcgt aagaagggtg
     1621 atggtagctc cgtaccgctc agtttcgcgc gcgacggtct agactacatc ctgggggccc
     1681 tggaatatgg gagaagcggt ggcctgtacg aaagcagcga tgaagaggag gaaggaaagg
     1741 tggagactgg acagacattc ttggagagtg accctgagag caattctgaa gaaagtgagg
     1801 aggacccaga ctcgcaagtg ccgcaggagg atcaggaaga tgtaaactcc caaaaggaag
     1861 gagaaacaga aagtgggaca agaggaaata aagggaataa gaaagtgcgt tttgcagaag
     1921 ttgtagaaaa gagcgaaagt tctttggaag atgacttaga acatcaggag agtcactgtg
     1981 ttgaaagtgg tgaaaagtac atccctcctc agttgagaag tgaggagaca gtagatgtcc
     2041 aaaagaaaga agagctagac aggctcaaga aacatgttaa aggcctaatt aacaggttga
     2101 gtgaaccaaa catggcttct ataagtgggc agctagagga gctgtacatg gcccacagca
     2161 ggaagtacat gaacgatact ctgactgctg tcctcatgga tgcctgtgtc actacctcaa
     2221 ccatgcccag cagactgatg atggagcatg tcttcttagt cagtatcctc caccacacgg
     2281 tcggaacaga ggttggtgct tgcttccttg aagctgtggt gaagaagttt gatgatgtct
     2341 atagagatgg aggtgagggg aaagaactgg acaacctctt taccatgatt gctcatttgt
     2401 acaacttcca cgtggtacag tctctcctca tctttgacat tttaaagaag cttgttggaa
     2461 cttttacgga aagagacatt gagctgatcc tgttgatgct gaaaaatgtg ggctttgcat
     2521 tgagaaaaga tgatgccttg tcacttaagg aactgatcac agaagcccag gcccaggcca
     2581 ttggtgcagg caacaagttt caggaccaga acagggtacg gtttatgttg gaaacaatgc
     2641 tggctctgaa gaacaatgac atgcgtaaaa tccctggcta taatcctgag cctgtggaga
     2701 agctgaagaa gttgcagaga gctctggttc gaaatgctag ctcaggttct gagactcagc
     2761 ttcgcatctc ctgggatggc atcttgaatg cagagcagac tggtcgctgg tggattgtgg
     2821 ggtctgcatg gagtgggacc ccaatgattg aaaaccatca cacacacctg cagaagccac
     2881 ttgcaggcac ggctagctct aagatgctgg agcttgccag gaagcagagg atgaacactg
     2941 atgtcaggag gaatatattc tgtactatga tgacaagtga ggacttcttg gatgcctttg
     3001 agaagctgct gaagcttggg ctgaaggacc agcaggagag agaaatagtt catatcctca
     3061 tggactgctg cctgcaagag aaaacctaca accctttcta tgctttcctg gccagcaagt
     3121 tctgtgccta tgaaaggaga ttccagatga ctttccagtt cagcatatgg gacaaatttc
     3181 gggacttaga aaatttgtca ggcactaagt tctcaaacct agtttatctg ctgacacact
     3241 tgttgaagac aaagtcgctt ccactttctg ttctaaaggt agttgaattt agtgaattgg
     3301 ataaacccag agttcacttc ctgcggagag tgttgactga gctgttgatg gaaacagaag
     3361 acgatgacct ggttgtgatt ttttcaagag tgtctagcaa cccaaaactg ggaatgttgc
     3421 gagaaggcct gaagctcttc attagccact tcttactgaa gcctgcacag cctcagcaga
     3481 gtgctgagaa ggccagtctg ctgcgagaga gggccggtct tgcctctaag tctttacagg
     3541 gcaaagccat cctgaggatg taaacaaaga acagggagca tttgaccaag agatgtgatt
     3601 tctgagttca agaccatcct gcctttgtaa gagcgggagg agttatgcca tgttctgtca
     3661 tggtttaaat actgtatttt cagggttgta ctgtgtactt caagtgtata tgtgtataca
     3721 gcaggtcaga ggaaaggggg aaagaagatg ggaattaaac cctgagggga gggttgggaa
     3781 tcataaattg atggcttttt aatcatctaa aatgttaaaa aaaaaaagtt taaaagctgg
     3841 ggctggggat ttagctcagt ggtagagcgc ttaccttgga agcgcaaggc cctgggttcg
     3901 gtccccagct ccgaaaaaaa gaacaaaaaa aaaaaaaaaa aaaagtttaa aagctgggca
     3961 catggtatca catgacttta attccaccac ttgggaggca gaggcaggca gatctcttaa
     4021 gttccgggcc agcctggtct acatagttct aggacagcca gagcaaattg tgcgacccta
     4081 tctcaaaaag aaaaagttca aatcccctaa gagactggtg cttaggctct gatatctcca
     4141 ctcagcagtc ccactgactt caaggaggag agagagaaga acagagataa aatgattgtg
     4201 tcaggtaagg gtagcatggg ctcacagtct gaagaaggaa tggccttgga tacatgactt
     4261 ccatccttaa agtttgcttt ctctctcaag tgctgcagac ttggctaacc ctgaccttca
     4321 gttgtaacta aatagaagta gaaaagtcct aagtcagagc ttttcgcgca gcagtattct
     4381 gtgcagagtg ccctttcgag gcatgcaggc aggcacagac aagggatgct gctcctatgt
     4441 gactcacccc ttcggttaga cttttaacag cacatccctg tagcagtgtg tttgaaatga
     4501 ctgtgtacag tcaggaagtc tccatgtgga tccctgagaa ctgagccatg aagtgagcta
     4561 gcagtgtctg ctgctgttct tgttgctatg acaaacctga caagagtgca taaggaaggg
     4621 tggcctgggc tcatacagtg tatacacatc atagtggggt atcaggcagc aagagctcaa
     4681 ggcatcttgt cacattgcat ctgcagtcag gaagcagaga gagacacagg tacttggctc
     4741 acttctcctt ttcattaagt ccaagcccca gccaaggcat agtgccatcc atgttcagga
     4801 catccaccca aattagccca atcaagaaac tctcacaacc actcgcagag gtttgcttcc
     4861 taggtgatgt ggagcctatc aagtgggcag cgtatctaga tctggggtta ggagtgaacc
     4921 atagtggaac acttgctcgg actctaggca cccctcagct ttacacaaca aagtgtggtt
     4981 tacttacctt ttctgaattt tatttatatg tgagtgtatg gacatgtgta caagtgaagg
     5041 ccagaagagg gtgtcctgga ggtcgagttc caggtgcttg tgagcagcct aattggggtt
     5101 gtgggaccca aactgagttc cttttaggag aacagcaagc actctcaagc cagatctcta
     5161 gccccaggta tgtcttcctc cccacccgac cccatggaat taaaggcata tatcaccacg
     5221 tcaggcccaa ctctgtgtgt gtgtcagtgt gcttatagta aaagaactaa tgtataagct
     5281 tggtgcagtg gcacacacct ttaatcccag actttggatg cagaggcaaa cagatcactg
     5341 acagttctca tccagcctgg tcctcagtaa gtaccaggac taaagaacct gtcacaaaag
     5401 caaacatgta tagaatcact ttttaaaggg ggaattttat ctgtaaaata aaagtgtaaa
     5461 ttttggggtt ggggattcag ctcagtgtag agcgcttacc tagtaagcgc aaggccctgg
     5521 gttcggttct cagctccaaa aaaaaaaaaa aaaaaaagaa agaaaagtat aaattttatg
     5581 taaaaataaa ttacttttaa gctattttct gtagtgtgtc accaccactg acactgaggc
     5641 tgacttgtct catggcttgt tggcttggat ccatcccaaa agctgctgac acagtgtaag
     5701 aatgtccata cttggttcac caccagactc ttccctttat catgtgactt ttctgaacaa
     5761 aacaaaacat attggatacc aagaagccat gtccaaatgg aggagacagc tgcgtgtaga
     5821 gggttattag ccttctgagt tgactctaga tggacagtgt ctgaggtgat atctctattt
     5881 ctaatgtgtt aatcttactc tacattaaga agcagaaccc cctttcacca cttgatatca
     5941 ctgtgtactc ttagatccct attttacctt aatgtaggcc atgcttgatt caagtgtgct
     6001 tttcaagaca caggaaaatt ttcatggaaa ggatttcatt tctc
//
