LOCUS       NM_001399235            3659 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus nucleolar protein 9 (Nol9), mRNA.
ACCESSION   NM_001399235 XM_233702
VERSION     NM_001399235.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3659)
  AUTHORS   Heindl,K. and Martinez,J.
  TITLE     Nol9 is a novel polynucleotide 5'-kinase involved in ribosomal RNA
            processing
  JOURNAL   EMBO J 29 (24), 4161-4171 (2010)
   PUBMED   21063389
REFERENCE   2  (bases 1 to 3659)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 5, 2022 this sequence version replaced XM_233702.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2071487.1,
                                           SRR26643298.30460.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-476               JAXUCZ010000005.1  167829269-167829744
            477-696             JAXUCZ010000005.1  167830715-167830934
            697-824             JAXUCZ010000005.1  167831195-167831322
            825-960             JAXUCZ010000005.1  167835321-167835456
            961-1048            JAXUCZ010000005.1  167835573-167835660
            1049-1146           JAXUCZ010000005.1  167836181-167836278
            1147-1308           JAXUCZ010000005.1  167839422-167839583
            1309-1609           JAXUCZ010000005.1  167840428-167840728
            1610-1721           JAXUCZ010000005.1  167841314-167841425
            1722-1899           JAXUCZ010000005.1  167844231-167844408
            1900-2033           JAXUCZ010000005.1  167845376-167845509
            2034-3659           JAXUCZ010000005.1  167846184-167847809
FEATURES             Location/Qualifiers
     source          1..3659
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3659
                     /gene="Nol9"
                     /note="nucleolar protein 9"
                     /db_xref="GeneID:313744"
                     /db_xref="RGD:1566167"
     exon            1..476
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..2168
                     /gene="Nol9"
                     /EC_number="2.3.1.50"
                     /codon_start=1
                     /product="polynucleotide 5'-hydroxyl-kinase NOL9"
                     /protein_id="NP_001386164.1"
                     /db_xref="GeneID:313744"
                     /db_xref="RGD:1566167"
                     /translation="MAESEVMLRRVPSRSSWQRVRKARPHLLLSRRGRRRFGVLTRGE
                     LRRLRRRLLRAHALGGDWKLGVPAGAHVAVKCKIRTRSRPGSRSQPTPSVPPVPCTRV
                     GSCSLLNPRNHSTPQSRAGRRVLKVSPNITQPTLDLGSGRVLLMLPPGEGFTFSGICR
                     VTCIYGQLEIYGHIIKQGQPPQDVFSVYTHSYLTINGVPYSEPEKSKKGIRREIRALL
                     KPYMKLDDRNWVVRYFPPLGSILILERLQTRLVDFLRTYKCASYVLLQENILVRDNSE
                     FVALNKIGIRRQKRKKGICLSESGLCALEELISVSCDGCPVILLCGACDIGKSTFSRI
                     LINHLLNSIPGVDYLECDLGQTEFTPPGCISLLNITEPLLGPPYTHQRKPQKMVYFGK
                     TNCHNEYENYIEIVKYVFRDYKREFPLIINTMGWVSGDGLLLLVDLIRVLSPNYVVQL
                     TSDRSEPMQPLTSEFVELTDGLYTKSKIKRYRGFEIPEFGDSLGFAEEEKESSPVPVF
                     TGHILLTVYSEFLSSKNEKNRGKYNRIFRDLAVLGYLSQLMLPVTEPLCPLHSLTPYQ
                     VPFNAVAIRVTHADVAPTHILYAMNASWVGLCKIVDDMKGYTRGPILLAQNPICDCLG
                     FGICRGIDMDKRLYHILTPLPPEELRTVNCLLVGTISIPHCIFKNQPGTEGTVPYVTR
                     DYNLKLLGASEKIGEREYRNILPRHKSRQRRK"
     exon            477..696
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            697..824
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            825..960
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1048
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1146
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1308
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1609
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1721
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1899
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            1900..2033
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
     exon            2034..3659
                     /gene="Nol9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccggagggg ttccgggcca agtatggcgg aatcagaggt gatgctccgg cgggttccga
       61 gtcgctcttc ctggcagcgg gtccgcaaag cccggcccca tctcctcctc agccgtcggg
      121 gccgtcgccg gtttggggtc ctcacccggg gtgagctgcg tcgcctgcga cggcggctgc
      181 tacgggcgca cgctttgggc ggggactgga agctaggtgt ccccgcgggc gcgcacgtgg
      241 cggtaaagtg caaaatccga acccgcagcc ggccggggtc ccgcagccag cccacgccga
      301 gcgtcccgcc cgtgccctgc acccgggtcg ggtcatgcag cctgctcaat ccccgaaacc
      361 attccacgcc ccaaagccgg gccgggcgcc gggtcctaaa ggtgtcgccg aacatcaccc
      421 aacccacgtt ggacttaggc tcgggccgcg tgttgctgat gctaccgccc ggagagggtt
      481 ttacttttag tgggatctgc cgcgtgactt gcatctatgg ccagttggaa atatatggcc
      541 atatcatcaa acaaggccag cctcctcaag atgtcttttc tgtctacacc cactcttacc
      601 tgaccatcaa tggggttccc tactcagaac ctgagaaaag caagaagggg atcagaaggg
      661 agatccgggc cctgctcaag ccttacatga aactcgatga cagaaactgg gtagtgcggt
      721 atttccctcc cctgggctcc attctgattc tggaacggct gcagactcgc cttgtggact
      781 tcttgaggac ctataagtgc gcctcatacg tgctcctgca ggagaacatt cttgttcggg
      841 ataattctga atttgtagct ctgaataaaa ttggcatcag aagacagaaa aggaagaaag
      901 gcatttgctt gagtgagagc ggactttgtg ccctggaaga gttaatcagc gtgtcctgtg
      961 atggctgccc tgtcatcctg ttgtgtggcg cttgtgacat tggaaaatca acgttcagta
     1021 gaatactgat taaccactta ttaaatagca ttcctggggt tgactatctg gaatgtgatc
     1081 tggggcagac agagttcact cctcctggct gtatttcttt acttaacatc acagaaccac
     1141 ttctgggacc cccttatacc caccagagga agccacagaa gatggtgtat tttgggaaga
     1201 cgaactgtca caatgaatat gagaattaca ttgagatagt aaaatacgta ttcagagatt
     1261 ataaaagaga gtttccactt atcatcaaca ctatgggttg ggtgtcaggt gacgggctgc
     1321 tgctgcttgt cgacctcatc cgagtgcttt cccccaacta tgtcgttcag ttgacttctg
     1381 accgcagtga gccaatgcag cctctcacct ccgaattcgt ggagctcaca gatggcctgt
     1441 atacaaaaag caagatcaaa agataccgag gttttgaaat tccagaattt ggagacagtt
     1501 tgggatttgc tgaggaagag aaagagtcta gtccagttcc cgtcttcact ggacatatat
     1561 tgctgactgt ttactcagaa ttcttaagta gtaaaaatga aaaaaacagg ggcaaataca
     1621 acaggatttt tcgagatctg gcggtgttgg gctaccttag ccagctgatg cttccagtga
     1681 cagagccact ttgtcctttg cacagcctga caccctatca ggtccccttc aatgcagttg
     1741 ctatccgggt cacgcacgcc gacgttgcac ctacccacat actgtacgct atgaatgcca
     1801 gctgggtcgg cctttgcaag attgtggatg atatgaaagg ctacactcgg ggccccattc
     1861 tgctggccca gaaccccata tgtgactgtt tgggctttgg tatctgcaga ggcattgaca
     1921 tggacaagcg gctgtaccac atcctcaccc ctctaccacc agaggagtta agaactgtga
     1981 actgtctgct ggttggcacc atttccattc cacattgtat tttcaagaat cagcctggga
     2041 ctgaagggac agttccttat gtcaccaggg attataattt aaaacttctt ggagcatcag
     2101 agaaaattgg ggagagagag tatagaaata tactacctag acacaaatca cggcaaagaa
     2161 gaaaatgaag cctgggtgta cagagagact ttcgcctcga cacattgtcc ccaagcctag
     2221 agtcagcaga ctgagcgggc tgtgtggctg ctgacctcgt gcccatgccc agtgttcata
     2281 taactggaaa atgtgctgtg gtaagagtca ttcaagcccc ttcgtttttt tcccctctaa
     2341 gacatggagg gcctcatata gctcagactg gcctcagtac tctggtcctc ctgtctcact
     2401 gtccaagggc tgcgcatccg gcttttggtc tcatacttgg cccagacctt gccgactggt
     2461 tgtcctgggt gtgtggtgct cctggagagc tgggaagcat tgaagaaagc tgtggtgtcc
     2521 tccaagaaga ccagggccac aaaagtgtgc ctagaaactg agtagcaggc tgaccacagg
     2581 ttctcgggtg cagtgtacgg actggcaggg acctgagcag gctcagtggc cgtgagtaag
     2641 aggcttactc cgttgaacct tgtggacctt agcaccccag tgtggcggct cattggcctg
     2701 atcctttgat gcttgccatc gaatctccca atgctgcaat caagtgttag aggacggtac
     2761 gtcgtcttgt taatttctgg gtctttaatc atgaggcttt atgttgaaga acttgctctg
     2821 acattcagaa agcctcacgt tagttaaaga aatccatggt tccctaattc tggggatgtt
     2881 ctgacagacc ttgaggctgt agatacgtca gaaagcctcc atgttagtta aggaaatcca
     2941 tggttcccta attctgggga tgttctgact gggaatgttc tgacagacct tgaggctgag
     3001 atactaccat gggcccacca gcctgggaca ggcacacata tgcctggctt gggcagacct
     3061 ttgctatcaa cgatttcttc taaggcccca gaggccactg caagtggatg ttgcaatccg
     3121 gagtgactgg gtcgggtcat ttttgtggtt gcaaagcagg accctgagga gcctcttggg
     3181 ctggcatgat ggatctgaca agactccacc ttgcatggaa tcaggaagga ccaaggctat
     3241 ggaaggctca caacattgat tgtctccgtc ttgtctgtag tcataggagt gtggccagtc
     3301 tcctctgctt ggcgccatct ttgtggtggc ctcagcatct gaaaatcctc cgaggaggca
     3361 gagctgcctc ttctggatta gtcggattcc ctgtagatca ctcgggctca caactactcc
     3421 ctgccccacc cccaacacca tctctgtctc acttgagctt gtggtgagcc tttgcagagg
     3481 ggaggagctc ttcctgccca ggcactctct gggctcctga tcctcaagcc tctgcttcct
     3541 gggtgctcag atcacaggtg tgtgccgtct tagccttgcg gacagtttta agacagcctt
     3601 ggtcaccttc atctccctcc ccgggtcttc ctgtcttcac aataaagatc ccgagtcca
//
