LOCUS       XM_039106671            6193 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus nucleolar protein 4-like (Nol4l),
            transcript variant X1, mRNA.
ACCESSION   XM_039106671
VERSION     XM_039106671.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6193
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6193
                     /gene="Nol4l"
                     /note="nucleolar protein 4-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 158 long SRA reads, 12 Proteins"
                     /db_xref="GeneID:362240"
                     /db_xref="RGD:1563510"
     CDS             1..2040
                     /gene="Nol4l"
                     /codon_start=1
                     /product="nucleolar protein 4-like isoform X1"
                     /protein_id="XP_038962599.1"
                     /db_xref="GeneID:362240"
                     /db_xref="RGD:1563510"
                     /translation="MPKPTLLLRGGWERERSPGDSELGRQFRDWCLRTYGDSAKTKTV
                     TRSKYQRIAEVLQGGGGTGAGSGPAAGEKGKFQFWVRSKGFRLGSGREPKMGQVVYVP
                     VKTGSGADGLSEPEGISLKRVAVVEDFFDIIYSMHVESSAEPGKAPKHAGQKKTYRAI
                     AETYAFLPREAVTRFLMSCTECQKRMHFNSSGPEPKENEPPSPLVSGIIDYNMPLTST
                     YLKQMKLRVMNSQEQDETSVSSEDFDMNDSTWMSADPHLASSLSPNQEERMRSPQNLH
                     SQEDDDSSSESGSGNGSSTLNPSTSSSTQGDPAFPEMNGNGAAAPMDFTASAEDQPIN
                     LCEKLPPGTALGTPSYPSDGCGTDGLRSRVKYGVKSTPESPPYSSGSYDSIKTEVSGC
                     PEDLTVGRAPAADDDDDDHDDHEDNDKMNDSEGMDPERLKAFNMFVRLFVDENLDRMV
                     PISKQPKEKIQAIIESCSRQFPEFQERARKRIRTYLKSCRRMKKNGMEMTRPTPPHLT
                     SAMAENILAAACESETRKAAKRMRLEIYQSSQEEPIALDKQHPRDSTAITHSTYSLPA
                     SAYSQDPVYVNGGLNYSYRGYGSLSSNLQPSASLQTGSHSNGPTDLSMKGGASTPTPP
                     TPTPSSNSTSRTMPTAQLSPTEISAVRQLIAGYRESAAFLLRSADELENLILQQN"
     polyA_site      6193
                     /gene="Nol4l"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgccgaagc cgacgctgct gctacgcggg ggctgggagc gcgagcgcag ccccggggac
       61 tcggagctgg gccgccagtt ccgggactgg tgcctgcgca cctacggcga ctcggccaaa
      121 accaagacag tgacacgcag caaataccag cggatcgccg aggtcctgca gggcggcggc
      181 gggaccggcg cgggcagcgg cccggcggcg ggcgagaaag gcaagttcca gttctgggtg
      241 cgctccaagg gcttccgcct gggcagcggc cgggaaccca agatgggcca agtggtgtat
      301 gtgccggtca agacgggctc gggggcagat ggcctgtcgg agcccgaggg catctctctg
      361 aaacgggttg ctgtggtgga agatttcttt gacatcatct actcgatgca cgtggagagc
      421 tccgcagagc caggcaaagc ccccaagcac gctgggcaga agaaaaccta ccgagcgatc
      481 gcggagacct acgccttcct ccccagagag gctgtgactc ggttcctcat gagctgcacg
      541 gaatgccaga agaggatgca ctttaactcc agcggcccgg agcccaaaga gaatgagcct
      601 ccatcccctc tggtgtctgg cattattgac tacaacatgc ccctcacctc cacctacttg
      661 aagcagatga agctacgagt gatgaactct caggagcagg atgagacttc tgtgagcagt
      721 gaagattttg atatgaatga ctccacatgg atgtcagctg acccccacct ggcctccagc
      781 ctgagcccca accaagagga aaggatgcgg agcccgcaga acctccatag ccaggaggat
      841 gatgactcct cctccgagag cggcagtggc aacggctcct cgaccctcaa cccatccacc
      901 tccagcagca cacagggtga tcccgccttc cccgagatga atggcaacgg agctgcagcc
      961 cccatggact tcactgccag tgctgaggac cagcccatta acctgtgtga gaagctcccg
     1021 cctggcacag ctctgggcac accatcctac ccctcagatg gctgcggcac tgatgggctg
     1081 cggagccgcg tcaagtatgg ggtaaagagc actcctgagt caccccccta cagctctggg
     1141 agctatgatt ccatcaagac cgaagtcagt ggctgtcccg aggatctgac agtgggccgg
     1201 gcccccgcag cagatgatga cgacgatgac catgatgacc atgaggacaa tgacaagatg
     1261 aatgactcgg aaggcatgga ccctgagcgg ctcaaggcct tcaatatgtt cgtgcggcta
     1321 ttcgtggatg agaacctgga ccgcatggtg cccatttcca agcagcccaa ggagaagatc
     1381 caggccatca ttgagtcatg cagccggcaa tttcctgagt tccaggagcg ggcccgcaag
     1441 cgaatccgca cgtacctcaa gtcctgccgc cgcatgaaga agaacggcat ggagatgacc
     1501 aggcccactc ctccccacct gacctcagct atggcagaaa acatcctagc agctgcctgt
     1561 gagagtgaga cgagaaaggc ggctaagagg atgcgcctgg agatctacca gtcctcacaa
     1621 gaagaaccca tagccctgga taagcagcac cctcgggact ctacagccat cacccattcc
     1681 acctactcac tgccagcctc tgcctactcc caggaccctg tgtacgtcaa tggtggcctc
     1741 aattatagct accgcggcta tgggtccttg agcagcaacc tgcagccctc cgcttccctc
     1801 cagacaggaa gtcacagtaa tgggcccaca gacctcagca tgaaaggcgg ggcctccacc
     1861 cccactcctc ccacacctac cccttccagc aacagcacca gcaggaccat gcccacagcc
     1921 cagcttagcc ccacggagat cagtgctgtg cggcagctca tcgcaggcta ccgagagtct
     1981 gcagccttcc tgctgcgttc tgcagatgaa ctggaaaacc tcattttaca gcagaactga
     2041 ccccgctggc ccacagagtg cacgacgcca gggaaggagg ctgtcccagc ctggacccag
     2101 cttcctgcct caaccagttg gtacactgtt ttctgaaaga ggtgggatcc aaaagagctg
     2161 tttctagctg cactccaagc atcggagact ttgggcacaa ggacactttt tccttttttt
     2221 ttttttttaa tttcaccaca cgggtgctct gacctgcttg gaaggaggcc agtggggcag
     2281 ctctaaaagg gttgaggctc ccctgaaaag gcacaggggc tgcagctcta tttggaatca
     2341 cctttgtgga ccctgatgtt agaaccctcc ccccccccaa taattacctt tcaagtctta
     2401 ggtgagcaga attgcatatt tattgagaag agcaaaagtg gaccctttct ctccccttag
     2461 taatttattt ttctgaaatg gattcttttg tgtttgtaca gattgccagt ctgtgtctgt
     2521 ctaatcagaa ggatgtaccc ctgtacctaa cattccatat cactacacgg atgtaagctg
     2581 ggggccagca gagttgggtg ccagctcact gtcctgagtg cccagcatac ccttgggaag
     2641 gccaccacac tccactaggc tgtcttgttg cagatcccag tgctgccaca gggacactgc
     2701 caaacagggg gacctcaccc acactcacta caaacaaaag cccctaccca tcctacagag
     2761 tcccagtcac acggtcacct gtactctacc tcacactcca gcgtgggctt ttccaggatg
     2821 tgctccaagt gtgttctgaa tggctgtctc cccaactccc acacaatgta tctgtctgct
     2881 gggaggtaaa tcagacccag tgtccaagaa gcaagcccag aggggcttgg tccttaaaac
     2941 cagcagctcg ccattgctgg gctcttgaag atgcttgaca tgatagagtc gggagctagt
     3001 caaggaccca gttcttatga acacaggctc cacccagccc ccagataacc tgctagaggg
     3061 acacttctct ttgtcaagca tctgtgtgcc caagggggga ttacagtttc cactcctcac
     3121 ctcacaatgg gagtaaaggg atcagatcgt cagtgaagtg gagaactact tgcattctcc
     3181 taggaccaaa ctttcttctg gaaaggcctg tcctgtaaga aacccagtcc ctggagtgtg
     3241 acaagggaca agaaaaagct gacctggttt ccttcctccc tgacaggcac ttccttttgc
     3301 tctgtgcaat acctaccagt gctgctaaaa ccagggattc acccagacct cagcaggcca
     3361 gggggcctct ccctcaacac tccgtagcca tgacagcagc actccgctgc ctgcccctgc
     3421 ccagagctgg cagaagccct gttgcctttc ttccctcaga gcaaggaggc ctcaagggag
     3481 ccaggggctg agtggacact aagataacca caaagagcca ctcttggtcc caaagcgagt
     3541 gccccttccc aaactggtct atggcaggga ctgctggtgg cagcctgaca gactatcctc
     3601 aaatgggtgg gcaggcagtg ccagtgcaga tgccctacct gttgagattc agggctgtaa
     3661 ggcagggctc cccaccctgc acacttccac actggggtta aatgtggtct ttcacagggc
     3721 ctacaatgcc tacccagcca caccacctct gccttcatgt gcccgctcac caggcttctg
     3781 gactgggcca ggacacctga gtccccttcg tacagcacaa acccagtgcc cagggcctcc
     3841 ccacagctgg ccggccatgt gcccagttcc ccacctgctc agtaggactc ctggatgttt
     3901 gaatttgtgt aaatatttat ttttgtgtgt gaatacttca aagtaatcag tagatctttt
     3961 gcaaaatgtt accccaggca atttgtgaaa atgttaatgt tgaaaattgg cagagacaat
     4021 cgccacccta gaatttctgt tatcaattgc ttaccacgtt gtgtctgctc ccagaggcag
     4081 tacccaagct agacacaaaa tggcttgcat ttttgaaaga agacaggaga gaagagacta
     4141 ggcagaggct tctccctctc ccctcatagg acacatctgt aagaacgagc ataatctaca
     4201 tctaagtggt gttttctaac tgcaagcagt cttgaccagc caccagcagc ctgcacccag
     4261 agtacagtgt gagcataggt tccatgtgtt ttgcttcaag agacatagaa ccagtgccag
     4321 tgctgatggg ttcccgaggg gctgcaggcc agtggatgct ggcatgctga ccagagaagc
     4381 ggtccccaaa gcctcagagc agccatatca ggagcaagtc agtgtggaca caggattcca
     4441 ttatctagtt cagtcaggga acttgttctg ttttcctttt gttttaaaag atgcagcttc
     4501 aagccctccc ttcctgattt gggcctgcct tttcccagga ggagcttctc caagccttgt
     4561 cctatagcta cttcagtgtg atggaagcct cagggcacaa agtaatcatt ggtgatgtca
     4621 agtcacaatg gaaatgcagt gtaggatatt caaaccccag agtcctcaca gggcagattc
     4681 cctaaggtat cgagaagtgg tggatgatct gctagaccag tgagagtgta tatgacccat
     4741 ctgaaaggat tttttttctc tcaccactca acaaatggac agtttattcc caaggacggt
     4801 gttggggagg agcaggcagg ggcaggaggg tcttagagga cttggaacag gtggaaccca
     4861 tctgtccctc cctattctca agggccacaa atgactccac aggtggttat agaattaacc
     4921 accagttcat tctcaaaatg ctgctttgaa ctcagagggt tgatactttt aatttgtaat
     4981 tttttgtaaa actttttaca agatagtaaa gtatttcacc agaataccag tttcaatccg
     5041 tccgtggtct gatttttata taatttagtg gtgctttaga gactttgttt tgttgtttct
     5101 gagcgtaaca gctcaatcct ctcttgcctg tatctaccta agaccaatgt gaacctttgt
     5161 attttgctcc taattttgga ctcagtggaa gtgtactgtt tacatgtaca gatgccccat
     5221 ccctgtgttt tctgcaagac gcgcgctcga ggaggaagat tgcacctcac tagctcatct
     5281 gcttagcaaa gccacaaaac aaaacctctc actttgtacc cgtttccacc taaaaacaaa
     5341 aaccttcacc acctggaact cagatttgcc aacacactct gcctggtaga cgccccgggc
     5401 ctctatcatg tgttccctta ggaatcaagg cagcacctcc tgccagctgg gtgcgagaca
     5461 gcacacagag gagacactga tgcaggactt tactgcccag ctctgggagg aagttctctg
     5521 agcagcaggc aatacgaagg tcaagaggac tcatgggcct tcaggagcaa gccaggcagg
     5581 atttagggac aacacaagag gccatcaatc tgctggcatg actgagacac actttggaag
     5641 aacgtgagtt ccatgtaagg tgagactgtg actttgagtg cagatgacac aagcacttca
     5701 ggggagggtc aggggctcca gacagtaagc ataaggcact taccgcaagc agtggatggc
     5761 accaactttt caaggtgact ttattaatca atggtttcac cgctaaatta tatttttaca
     5821 gatatgcacc tatgcaactt aatgtggctc ttctaagcag gtgaggacct cctcctcaat
     5881 gctctatata aagtgtttgt gttctgtata gtgagtttcc cagtaaatgt ggcttaatac
     5941 tttcattctt aggatgtgtc tttctacgtg atgcagctac taaattctgt tttgtttgtg
     6001 gaatgactag cacaggccga tgccctcttt ccctcactta ccagaagacc aatgagctgt
     6061 taatgagcgg ttatctccat ggtattactg ctaaatgcac tgatgtcata agtatgtgga
     6121 atccttttcc ttttgagact gtatatcata taccagactg aatctactta ataaacactg
     6181 aacaacaaac cca
//
