LOCUS       XM_039102257            3979 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nicotinamide nucleotide
            transhydrogenase (Nnt), transcript variant X8, mRNA.
ACCESSION   XM_039102257
VERSION     XM_039102257.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102257.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3979
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3979
                     /gene="Nnt"
                     /note="nicotinamide nucleotide transhydrogenase; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 79 ESTs, 8 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:310378"
                     /db_xref="RGD:1587346"
     CDS             31..3264
                     /gene="Nnt"
                     /codon_start=1
                     /product="NAD(P) transhydrogenase, mitochondrial isoform
                     X3"
                     /protein_id="XP_038958185.1"
                     /db_xref="GeneID:310378"
                     /db_xref="RGD:1587346"
                     /translation="MQSTEPRKITHQDLVFVNPLYEPMIRVLGSFNPHDFMSKPPSRN
                     WGFEKLGAQSNMAHLLKTVVTGCLCPSVSNLGSCKVLPGKKDFLRTFRTHQALWCKSP
                     AKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQALVKQGFNVVVESGAGEASKFPDDL
                     YRAAGAQIQGTKEVLASDLVVKVRAPMVNPTLGAHEADFLKPSGTLISFIYPAQNPDL
                     LNKLSERKTTVLAMDQVPRVTIAQGYDALSSMANISGYKAVVLAANHFGRFFTGQITA
                     AGKVPPAKILIVGGGVAGLASAGAAKSMGAVVRGFDTRAAALEQFKSLGAEPLEVDLK
                     ESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALIPGKKAPVLFSKEMIESM
                     KEGSVVVDLAAEAGGNFETTKPGELYVHKDGNVIFPAPTPKNIPKEAPAKQKTVAELE
                     AEKAGTVSMYTKTLRTASVYSAGLTGMLGLGIVAPNLAFSQMVTTFGLAGIIGYHTVW
                     GVTPALHSPLMSVTNAISGLTAVGGLALMGGHFYPSTTSQSLAALATFISSVNIAGGF
                     LVTQRMLDMFKRPTDPPEYNYLYLLPGGTFVGGYLAALYGGYNIEEIMYLGSGLCCVG
                     ALGGLSTQGTARLGNALGMIGVAGGLAATLGGLKPDPQLLAQMSGAMAMGGTIGLAIA
                     KRIQISDLPQLVAAFHSLVGLAAVLTCMAEYIVEYPHFAMDATSNFTKIVAYIGTYIG
                     GVTFSGSLVAYGKLQGILKSAPLLLPGRHALNAGLLAASVGGIIPFMADPSFTTGIMC
                     LGSVSALSTLMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALI
                     GSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAVEMIRE
                     ANSIVITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAG
                     VPYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVI
                     VMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK"
ORIGIN      
        1 cgagaagtat taactgactt actctgttta atgcaaagta ctgagccaag aaaaataacc
       61 caccaggatc ttgtgttcgt taatcctctc tacgaaccaa tgatcagggt acttggctcc
      121 tttaatcctc acgactttat gagtaaacca ccttcgagga attggggatt tgaaaagttg
      181 ggagcgcaaa gcaacatggc acatctactg aaaacggtgg tgactggctg tttatgtcct
      241 tctgttagca atttggggtc ctgtaaggtt ctacctggga agaaagactt tttacgaaca
      301 tttcgtaccc accaggcact gtggtgtaaa tccccggcaa aaccaggaat tccatataag
      361 cagttgacag ttggggtccc caaggagatt ttccaaaatg agaagcgagt tgccttgtct
      421 cctgctggtg tccaggccct ggtcaagcag ggttttaacg ttgttgtgga atcaggagca
      481 ggcgaagctt ccaaattccc agatgatctc tacagagcag caggggccca gatccaagga
      541 acgaaggaag ttctggcttc tgatctggtg gtcaaagtga gggcccccat ggtgaacccg
      601 acgttaggtg ctcatgaagc tgacttttta aagccctcag gaactctaat tagcttcatt
      661 tacccagccc aaaatccaga cttgctaaat aaactctccg aaagaaaaac tacagttttg
      721 gcgatggacc aggttccgag ggtgacaata gctcagggct atgatgctct cagctccatg
      781 gccaacattt ctggttataa ggctgttgtt ttagcagcca atcattttgg aaggtttttc
      841 actggtcaga tcacagctgc tggaaaagtc cccccagcga agatcctgat agttggtggt
      901 ggcgttgccg ggctcgcttc tgcaggggca gcaaagtcaa tgggcgcagt tgtccgagga
      961 tttgatacaa gagctgccgc cttggaacag ttcaaatccc ttggtgctga acccttggag
     1021 gtggacttga aggagtctgg tgagggccaa ggaggatacg cgaaggagat gtccaaagag
     1081 tttattgagg cggaaatgaa gctctttgct cagcaatgca aggaagtgga catccttatc
     1141 agcacagctc tgattccagg taagaaagct cctgttctat ttagtaaaga aatgatcgag
     1201 tccatgaagg aaggttcagt agttgtggat ttagctgctg aggccggcgg aaactttgaa
     1261 acgactaaac cgggagaact ttacgttcat aaggatggca atgtgatttt cccagctccc
     1321 acaccaaaaa atattcccaa agaagcccca gccaaacaga agaccgtggc tgagctggaa
     1381 gcagagaagg caggcactgt ctcaatgtac acgaagacac tgaggacagc atccgtgtat
     1441 tcagcaggtc tcaccgggat gctaggtttg ggcatcgtgg cccccaatct agccttttct
     1501 cagatggtga ccacctttgg cctggcgggc attattggtt accacactgt ctggggagtg
     1561 acccctgctc tccactcacc actgatgtct gtgaccaatg ctatctcagg tttgactgca
     1621 gttggtgggc tggcgttgat gggagggcat ttttatccct ccacaacttc ccagagtctt
     1681 gctgctcttg ctacattcat atcgtcagtc aacattgcag gtggttttct ggtgactcag
     1741 agaatgttgg acatgttcaa gcgacccacg gaccctccag aatacaatta cctgtatctg
     1801 ctccctggcg gcaccttcgt ggggggatat ttagcagctc tctacggtgg ttataacatc
     1861 gaagaaatca tgtacctggg ctcaggtttg tgctgtgttg gggccctggg cggcctttcc
     1921 actcagggaa cagctcgact cggcaatgcc ttgggcatga ttggggttgc aggaggcctg
     1981 gcagctaccc ttggaggcct gaagccggac ccacagctgt tagctcagat gtccggagca
     2041 atggcgatgg gcggcaccat cggactggcg attgcaaagc ggatccagat ctccgacctg
     2101 cctcaactgg ttgctgcttt ccacagttta gtgggtctgg cggcagtgct cacatgcatg
     2161 gccgagtaca tcgtggagta tccacatttc gcaatggatg ccacttcaaa tttcaccaag
     2221 attgtggcct acattggcac ttacatcggc ggagtcacct ttagtgggtc tctggttgcc
     2281 tacggaaaat tacagggtat tctgaagtca gcccctctgc tgctccctgg aaggcacgcg
     2341 ctcaatgcag gcttgctggc tgctagcgtg gggggaataa tcccatttat ggctgaccct
     2401 agttttacca caggcatcat gtgtctgggc tctgtgtccg cactctctac tctgatgggt
     2461 gtgaccttga cagctgccat tggcggtgct gacatgcctg ttgttatcac tgtgctaaac
     2521 agctactccg gctgggctct gtgtgcggag ggcttcctgc tcaacaacaa cctgttgacc
     2581 attgtgggag cactcatcgg ctcctcgggc gccatcttgt cgtacatcat gtgtgtggca
     2641 atgaaccgtt ccctggcaaa tgtaattctc ggaggctatg gtacgacttc aacagctggt
     2701 ggaaaaccca tggaaatttc cggcacacat acagaaatca acctggacaa tgcagtcgag
     2761 atgatccggg aagctaacag cattgttatt actccaggat atgggctctg tgcagctaaa
     2821 gctcagtacc ccattgccga tttggtgaag atgcttaccg aacaaggcaa gaaagtcagg
     2881 tttggaatcc acccagttgc gggccgaatg cctggtcagc ttaatgtgct cctggccgag
     2941 gcaggagtgc cctatgatat tgtgctagaa atggatgaga tcaacagtga tttcccagat
     3001 accgatctgg ttcttgtcat tggagctaat gacaccgtga attcagcggc tcaggaagac
     3061 cccaattcta ttattgcagg catgccagtc ctcgaggtct ggaagtccaa acaggtcatt
     3121 gtcatgaaga ggtcccttgg tgttggctac gctgcagtgg acaatccaat cttctacaaa
     3181 cctaacacag ccatgcttct gggggacgcc aagaagacat gtgatgctct gcaggccaaa
     3241 gttcgagaat cctatcagaa gtgaatattg acaatcaagc cagtgccttc ggttgcagga
     3301 acagagaatg agacatttat agatgagcaa agctctcaag gcccgaaaga agcctcagaa
     3361 aacaatggag attttcaaga tcagcaaccc ttgattctca aaaagcatcg ggagttctca
     3421 tcatctactt gtttatcatt gccattgcca aaaagcagag tattttgtca gcagtgagag
     3481 agtggcctca ctgtagatgc aatcccattg gattttgcaa ccccctttcg ggagctagaa
     3541 atgagctcag aagttgaatg ttcaagattt caggatatgt tttggtctga agaatattat
     3601 gctgtttgat catcacaggc acatgcattt agtgttttat ttttccacca aatgtgacaa
     3661 attttgaaac tttgatcaac tcctgacctg ttctcttgca ttttagccgt agtctggatt
     3721 gatcatgcca attccatatc aggtttttag ccttcactct agactctaga ttccaaagat
     3781 ctattttctc acttctattt taatatgtag aagatctaga tagtttaagt aataacttaa
     3841 aaggaataag ttgtattttt aaaagtccca tgccaattgg tctctttaat ttcaatcaat
     3901 taagtgctct tgaatggtct gtattaagtg ctcttgaatg gaatgcaacc atttgagtaa
     3961 taaatgagtt catcatgtt
//
