LOCUS       XM_039082582            1392 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NME/NM23 family member 9 (Nme9), mRNA.
ACCESSION   XM_039082582
VERSION     XM_039082582.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JACYVU010000200.1  2971973-2972074
            103-139             JACYVU010000200.1  2972481-2972517
            140-197             JACYVU010000200.1  2976690-2976747
            198-301             JACYVU010000200.1  2978364-2978467
            302-373             JACYVU010000200.1  2979195-2979266
            374-490             JACYVU010000200.1  2981513-2981629
            491-566             JACYVU010000200.1  2983821-2983896
            567-649             JACYVU010000200.1  2987050-2987132
            650-742             JACYVU010000200.1  2987446-2987538
            743-913             JACYVU010000200.1  2988441-2988611
            914-961             JACYVU010000200.1  2989631-2989678
            962-962             "N"                1-1
            963-1009            JACYVU010000200.1  2989679-2989725
            1010-1011           "NN"               1-2
            1012-1037           JACYVU010000200.1  2989726-2989751
            1038-1149           JACYVU010000200.1  2990179-2990290
            1150-1392           JACYVU010000200.1  2993052-2993294
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1392
                     /gene="Nme9"
                     /note="NME/NM23 family member 9; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 3
                     bases in 2 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 Proteins, and 76%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:315947"
                     /db_xref="RGD:1564871"
     CDS             107..1156
                     /gene="Nme9"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:899..901,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: thioredoxin
                     domain-containing protein 6"
                     /protein_id="XP_038938510.1"
                     /db_xref="GeneID:315947"
                     /db_xref="RGD:1564871"
                     /translation="MGNRKKEIALQVNIKTQERWEEMLASKGLTVVDVYQGWCGPCKA
                     MVSLFQKMKIEVGLDLLHFASAEADCLDVLGKYRGKCEPTFLFYARGELVAVVKGANP
                     ILLQKTILQKLEVEKKALAEGREWNVVTDENHLGAAKWPPRKKDGGKDGDIASSGKAC
                     TLGLIKPDAVAHGRADEIIMKIQEAGFDILTNEERTLTEAEMQVFYSHRAREEAFEKL
                     VHHMCSGPSHHLILTKTEGTEDVVTAWQNFLGPCDPDVARREQPERXQLSPSPGSEMP
                     FNAVHGSRDXDANRELALPFPSFQFXDKDMEAPQAMAICAIMGLKLLANAWRTERVHH
                     AKDSEVDLVWAQCRR"
ORIGIN      
        1 cttcgaccaa taagaggtaa ccaatggagc gaagggctga gtgcttggtt accaagacaa
       61 caaaagacgc tgccaagtta gaggctctct ggcttcttcc agagcgatgg gcaacaggaa
      121 gaaggaaatt gccctgcagg tcaacatcaa aacccaggag cgttgggagg aaatgctcgc
      181 ctccaaagga ctgactgttg tggatgtcta ccagggctgg tgtggaccct gcaaagctat
      241 ggttagcctc ttccagaaga tgaagatcga ggttggcttg gaccttctcc attttgcttc
      301 ggcagaggct gactgccttg atgttctggg aaaataccga gggaagtgcg agccgacctt
      361 tctgttttat gcaagaggag aactggtggc cgtggtgaag ggagccaacc ccattctgct
      421 tcagaagacc atcttacaga agctggaggt cgaaaagaag gctctggctg aaggccggga
      481 atggaatgtg gttactgatg agaatcattt gggtgcagcc aagtggcctc cccgcaaaaa
      541 ggatggtggc aaagatgggg acatagcatc atcaggaaag gcctgtacat taggcctcat
      601 taagcccgat gcagtggccc acgggagggc tgatgaaatc atcatgaaga tccaggaagc
      661 aggatttgac atactaacaa acgaggagag aaccctgaca gaggcagaaa tgcaagtgtt
      721 ctattcgcac agagccagag aggaggcatt tgagaagcta gtacaccata tgtgtagtgg
      781 acccagccac cacctgatcc tcaccaagac cgagggcacc gaggacgtag tcactgcttg
      841 gcaaaacttc ctgggacctt gtgaccctga tgtggccagg agggaacaac ccgaaaggtg
      901 acaactttca ccttctcccg gctcagaaat gccttttaac gctgtgcatg gaagccgaga
      961 cnaggatgcc aacagagagc tggccctgcc cttccccagc ttccagttcn nagataaaga
     1021 catggaggcc ccacaggcca tggccatctg tgcgatcatg ggtttgaagc tgttagcgaa
     1081 tgcctggagg actgagagag tacaccacgc taaagacagt gaagttgacc ttgtgtgggc
     1141 ccagtgcagg cgctgaggct caaactatgg ccggccctgt ggaggcagct ttgcatctct
     1201 aagtgtatct gaagaatggg acgctgtatt gtcttctgtc acaaggtcac tagaggagcc
     1261 atcggtgtgc tgctgtctgc acagaaggac ctgcagagga gcaccaatat gttcttggtt
     1321 tagccctatt ttgtggacaa caaaaataac tgtccatact tccctgtctt attaaacagt
     1381 cagtagaaca ta
//
