LOCUS       XM_039102292            1806 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NMD3 ribosome export adaptor (Nmd3),
            transcript variant X1, mRNA.
ACCESSION   XM_039102292
VERSION     XM_039102292.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102292.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1806
                     /gene="Nmd3"
                     /gene_synonym="RGD1308468"
                     /note="NMD3 ribosome export adaptor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 14 ESTs, 1 long SRA read, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 123 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310512"
                     /db_xref="RGD:1308468"
     CDS             100..1611
                     /gene="Nmd3"
                     /gene_synonym="RGD1308468"
                     /codon_start=1
                     /product="60S ribosomal export protein NMD3 isoform X1"
                     /protein_id="XP_038958220.1"
                     /db_xref="GeneID:310512"
                     /db_xref="RGD:1308468"
                     /translation="MEYMTESVDRSPGHILCCECGVPISPNPANICVACLRSKVDISQ
                     GVPKQVSISFCKQCQRYFQPPASWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVW
                     TEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVR
                     QKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGTVPC
                     RYKSSQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICICIR
                     VTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIECSIVRDLKRNAGAG
                     VISKKHTLGEVWIQKTSEMDTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNK
                     MKSDRVPDVVLIKKSYDRTKRQRRRNWKLKELARDREDMDTDDERQYQDFLEDLEEDE
                     TIRKNVNIYRDSTVPVESDTDDEGAPRISLAEMLEDLRISQDATGEEGASMMS"
ORIGIN      
        1 ccttcaccta cacccttcaa cacgcgggat ttccggtctt cctatcgcga gatctccctg
       61 gtggtggtgt ggcgctgtgg gaactgaagg ccccgaacca tggagtacat gacagaatct
      121 gttgaccgca gcccgggaca catcttgtgc tgtgaatgtg gtgtcccaat tagtccaaat
      181 cctgccaata tttgtgtggc ctgtttacga agtaaagttg acatcagcca aggtgttcca
      241 aagcaggtct ccatttcttt ctgcaaacaa tgtcaaagat attttcagcc accagcatca
      301 tgggtacagt gtgctttaga atccagggaa cttcttgctt tgtgtttgaa aaaaattaaa
      361 gctcctctga gtaaggttcg gcttgttgac gcaggctttg tttggactga gcctcattcc
      421 aagagactta aagttaaatt gacaattcag aaagaggtga tgaatggtgc tatcctgcag
      481 caagtgtttg tggtggatta tgttgttcag tcccaaatgt gtggagactg ccatagagta
      541 gaagctaagg atttctggaa ggctgtgatc caagtcaggc agaagactct gcacaagaaa
      601 acattctact atctggaaca gttaattctg aaatatggaa tgcatcagaa tactctgcgt
      661 atcaaggaga ttcatgatgg tctggatttt tattattctt caaaacagca tgctcagaag
      721 atggtggagt ttcttcaggg tacagttccc tgtagataca aatcatcaca aagattgatc
      781 tcccaggata ttcatagtaa cacatacaat tacaagagta ctttttctgt ggaaattgtt
      841 ccaatatgca aggataatgt tgtctgtctg tcaccaaaac tggcacagag ccttggaaat
      901 atgaaccaga tatgtatttg tatacgagta actagtgcca tccatctcat agacccaaat
      961 accttacaag ttgcagacat tgatgggaac accttctgga gtcatccttt caatagttta
     1021 tgccatccta aacagctaga agaatttatt gtgatagaat gcagcatagt ccgagatctg
     1081 aagcgaaacg cgggggctgg agtgatatca aagaagcaca cccttgggga agtctggatc
     1141 cagaagacat ctgaaatgga tacagataaa cagtattttt gccggactca cttgggacat
     1201 cttttaaatc ctggagacct ggtgttggga tttgatttgg ccaactgtaa cttaaatgat
     1261 gagcatgtca acaaaatgaa atcagataga gttccagatg tggtcttgat taagaagagc
     1321 tatgaccgta ccaaacgcca gcgccgtaga aactggaaac tgaaagagct tgcaagagac
     1381 agagaagaca tggacacaga tgatgaaagg caatatcaag attttcttga agatcttgaa
     1441 gaagatgaga caattagaaa aaatgtcaac atttacagag attcaaccgt ccctgtggaa
     1501 agtgacacag atgatgaagg agcgcctcga attagtctgg ctgagatgct tgaagacctt
     1561 cgtatttctc aagatgctac tggtgaagaa ggtgcatcaa tgatgtcatg atgagtcata
     1621 tgctgtttgc atatctgtga acttaggaag ttggcaaaat aatcttgatt gtatagtaca
     1681 tgtattccct tatattttgg ggtttttttg tttgtttttt tccggagctg aggactccct
     1741 tatattttga aaggagcaat tttaccttaa acttgaataa attactattt tgattgttca
     1801 cttaaa
//
