LOCUS       XM_056985176            2926 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NLR family, pyrin domain containing 5
            (Nlrp5), mRNA.
ACCESSION   XM_056985176
VERSION     XM_056985176.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2926
                     /gene="Nlrp5"
                     /note="NLR family, pyrin domain containing 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 Proteins, and 9% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:308325"
                     /db_xref="RGD:1307446"
     CDS             284..2926
                     /gene="Nlrp5"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein 5"
                     /protein_id="XP_056841156.1"
                     /db_xref="GeneID:308325"
                     /db_xref="RGD:1307446"
                     /translation="MKVLSDAFKPHQKTFRPHTIILHGRPGVGKSALARSIILGWAQG
                     KLYQDMSYVFLFSVREMKWTEKSSLAQLMANEWPHSQAPVTKIMSQPERLLFVIDGLD
                     DMDSALQHDDMTLSRDWKDKQPIYILVYSLLRKALLSQSFLIITTRNTGLENLRSMVV
                     SPLYILVEGLSASRRSQLVLENIPDDHQKIQVFHSVIENHQLFDQSQAPSFCSLVCEA
                     LQLQEKLGKRCTLPCQTLTDLYATLVFHQLTSRGPSQRALSKEEQITLVGLCRMALEG
                     VWTMRSVFYDDDLKSYSLKQSEISALFHVNILLQVGHSSEQCYVFFDLSLQDFFAALY
                     YVLEGLGEWNQYFSYITNQRNIMEVKRSSDSHLLEMKRFLFGLMNKDTLKTVEVLFRC
                     PVTPPIKQKLQHCLSLIGQQVNGSSPMDTLDAFYYLFESQDEEFVHMALKSFQEVWLL
                     INQKMDLMVSSYCLQQCQNLKAIRVDISDLFSVDNTPKLCPVALQKTQCKPLIIEWWE
                     NFCTVLSTHPNLKTLDLGHSILNEWSMKILCLKLRNSSCSIQNLTFKNSEVVSGLQYL
                     WMLLVSNRNLKYLNLGNTPMKDDDIKLACEALKHPSCSLETLRLDSCELTLTGYELIS
                     KLLLSASSLKCLSLARNKVGVKSMTSLGEALSSSTCTLQKLILNHCNIIKDAYGFLAL
                     ILANNRKLTHLSLTMNPVGNSAMKLLCEALKEPTCYLQDLELVDCQLTENCCEDLACM
                     ITTTKHLQSLDLGNNALGDKGVITLCKGLKQSSSSLRRLGLAACGLTSKCCEVLSSAL
                     SCNPYLNSLNLVRNDFNTSGMLKLCSAFQNPASNLWIIGLWKQQFYAQVRRQLEEVQF
                     IKPHVVIDGDWYSIDEDDRNWWKN"
ORIGIN      
        1 agaaaaacat gataaagcaa cccagaagga ccaaggatca gaggaggaac agacagaaag
       61 cacaacgact cctccagaaa aagatgatga agcaatccca aaggacgaag gatcagagga
      121 ggaacagata tcagtttcat taaaaataag attttgttca catttcattt ttcttctgtc
      181 ctcttatctg acttcatatc gtgggggtga cctacaagac tacaaggccc acgtgatcgc
      241 taaattcgac acaagtgtgg atctgcactg tgacggccca gagatgaaag tattgtctga
      301 tgcttttaaa ccacaccaga aaaccttcag gccgcacacc attatcctac atggaagacc
      361 aggagttggg aagtcggctt tggccagaag tatcattctg ggctgggcac agggtaaact
      421 ctaccaagac atgtcctatg tcttcctctt ctctgtcaga gaaatgaagt ggacagaaaa
      481 gagtagtttg gcacagctga tggccaacga gtggccacac tcccaggctc cagtgacaaa
      541 gatcatgtcc caaccagaaa gactcttgtt tgtcatagat ggtttggacg atatggactc
      601 tgccctccaa catgacgata tgacactctc cagagactgg aaggacaaac agcccatata
      661 catcctggtg tacagcctcc tgaggaaggc cctcctatcc cagtcctttc tcatcattac
      721 caccagaaac acaggcttag aaaacctcag gtcgatggtg gtgtcccccc tctacatact
      781 ggttgaagga ctatctgcat caaggagatc tcaactagtc ctcgagaaca tccccgatga
      841 ccatcaaaaa atacaagtct tccattctgt gatagaaaat caccagctat ttgaccaaag
      901 ccaggccccc tccttttgct cgctggtctg tgaggctcta cagctgcaag agaagctggg
      961 taagagatgc accctaccct gccagactct cactgattta tatgccacct tggtgttcca
     1021 ccagctcacc tcaagagggc cttcccagag ggcactcagt aaggaagagc aaattaccct
     1081 agtgggtttg tgcaggatgg cactggaggg agtgtggacc atgaggtcgg tgttctatga
     1141 tgatgacctg aagagctaca gtctaaagca gtctgagatc tcagccctct ttcacgtgaa
     1201 catccttctc caggttggcc acagcagtga gcagtgttat gttttcttcg acctcagcct
     1261 gcaggatttc tttgctgcct tatattatgt tttagaaggg ctgggggaat ggaatcagta
     1321 tttttcctac attacaaacc aaaggaacat catggaggtg aagagatcca gcgactctca
     1381 cctcctcgag atgaagcgtt tcttatttgg cctcatgaac aaggatacct tgaagactgt
     1441 ggaggttctg tttcgatgtc ccgtgacccc gcctattaag cagaagctcc aacactgcct
     1501 ctctctgata ggtcagcagg tcaatggctc cagcccaatg gataccctgg atgccttcta
     1561 ctatctcttt gagtctcagg atgaagagtt tgttcacatg gctctcaaaa gcttccaaga
     1621 agtgtggctt ctgattaacc agaagatgga cttgatggta tcttcctact gtctccagca
     1681 gtgtcagaac ttgaaggcaa tccgggtgga tatcagtgac ctcttctcag tggataatac
     1741 tcccaagctg tgccctgtcg ctctccagaa gacacaatgc aagcccctca tcatagagtg
     1801 gtgggaaaac ttctgcactg tgctcagcac ccatccgaac ttgaagacac tggacttggg
     1861 ccacagcatc ttgaatgaat ggtccatgaa gattctatgc ctcaagctga ggaattcatc
     1921 ctgcagcata cagaatctaa cgtttaagaa ttcagaggta gtttctggcc tgcaatatct
     1981 ctggatgctc cttgttagca atcggaactt aaagtacctc aatctaggga acacgcccat
     2041 gaaggacgat gacatcaagt tagcctgtga agcactgaaa catccaagct gttccctgga
     2101 gaccctgagg ttggattcct gtgagttaac cctcactggt tatgagctga tctccaagct
     2161 ccttctttca gccagcagcc taaagtgtct cagcctggcc agaaataagg tgggggtaaa
     2221 gagtatgaca tcccttgggg aagccttgag tagctctaca tgtacactgc agaagctgat
     2281 actgaatcat tgcaacatta tcaaggatgc ctacggcttc ctggcgttga tactggcaaa
     2341 caacagaaag ctgacgcacc tgagcctgac catgaaccct gtaggaaata gtgcaatgaa
     2401 gctactgtgt gaagctttaa aggagccaac ttgctacctt caagacctgg aactagtgga
     2461 ctgccagctc acggagaact gctgtgaaga cctggcctgt atgatcacaa caaccaagca
     2521 cttacaaagc ttggatcttg ggaacaatgc cctcggtgac aaaggagtca taaccctgtg
     2581 caaaggactg aagcaaagta gcagctccct gaggagactt gggttggcag catgtgggtt
     2641 gacttccaaa tgctgtgagg tattgtcatc ggccctctct tgcaacccgt acctgaacag
     2701 cctgaaccta gtaagaaatg acttcaatac atcagggatg ttgaagctct gctctgcgtt
     2761 ccaaaaccct gcctctaacc tgtggataat tggcctgtgg aagcagcagt tctatgccca
     2821 ggtgagaaga cagctggaag aagtgcagtt tatcaagccc cacgtggtga ttgatggtga
     2881 ctggtattct attgatgaag atgaccgtaa ctggtggaaa aactga
//
