LOCUS       XM_039095958            2823 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus NLR family, pyrin domain containing 4F
            (Nlrp4f), transcript variant X1, mRNA.
ACCESSION   XM_039095958
VERSION     XM_039095958.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2823
                     /gene="Nlrp4f"
                     /note="NLR family, pyrin domain containing 4F; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:691086"
                     /db_xref="RGD:1588619"
     CDS             1..2823
                     /gene="Nlrp4f"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein
                     4A-like isoform X1"
                     /protein_id="XP_038951886.1"
                     /db_xref="GeneID:691086"
                     /db_xref="RGD:1588619"
                     /translation="MASFSSDFSLVWYLKELNQKEFMKFKDFLIQEILELKLKQISWT
                     EVKKASREGLSNLLLKCYGENQALDMTFKILQKINRKDLTKKATREIAENSKLYREHL
                     KKKLSHNCSKMFNINIQDFILETVIQDDYDTFENLLVSKGDEKKPHMVFLKGMAGIGK
                     TLMLKNVMLAWAKGLVFQNKFSYTFYFCCQDVKQLKTASLAELISREWPISSAPIEEI
                     LSQPEKLLFIIDSLEGMEWDLTKQESELCGNCTEKQPVSLLLSSLLRRKMLPESSFLI
                     SATPETFEKMEDRIRCTDVKTATAFNERSIEICFHRLFQDRNTAQKAFSLVRENEQLF
                     TLCQAPLLCWMVATCLKKEIEKGKDPVSICRHITSLYTTYIFNSFIPQSAKYPSKKSQ
                     DQLQGLCSLAAEGMWTDTFVFSEEALRRNGIMDSDIPTLLDIGMLGKIREFENSYLFL
                     HPSVQEICAAIFYLLKSHGVHPSQDVKSVETVLFMFLKKVKTQWILWGSFIFGLLHKS
                     EQEKLAVFFGYQLSQKIRHKLYQCLETINGNVELQEQIDGMKLFYCLFEMEDDAFLVK
                     AVNCMQQINFVANYYSDFFVAAYCLKRCSTLKKLSFSTQNALNEELEQQYRERLLICW
                     NDICSVFVRSKNIQTLQIKDTNFSEPTFRVLYESLKYPSFPLSKLVANNVHFFGDNHM
                     FFELIQNHNLQYLDLSCSSLSPNGVKLLFDVLNQAECNIEKLMVAHCKLSPDDCKIFG
                     SILMSSKTLKILNLASNNLNQGISSLCEGLCHPNCVLEYLVLANCSLSEQCWDYLSDV
                     LRKNKTLNHLDISCNDLKDKGIKILCKALTLPDCFMKSLCLKHCQITTRGCQDLAEVL
                     RNNQNLKHLHVSNNKLKDAGVKLLCDAIKHPNCHLVDLGLEACEITGASSENLSFAFI
                     QCKTLKRLTLKGNAFEISGMVFPPKF"
ORIGIN      
        1 atggcatctt tcagttcaga tttcagcctt gtatggtact tgaaagaact aaaccagaag
       61 gaattcatga agtttaagga ctttctcata caggagattc tggaactgaa gctgaaacag
      121 atttcttgga ctgaagtgaa gaaagcatct cgggaaggtc ttagcaactt acttctgaaa
      181 tgttatgggg agaatcaagc cttggatatg accttcaaaa tcctccagaa gatcaataga
      241 aaagatctca ctaagaaggc aacaagagag attgctgaaa actcaaagct ttatcgagaa
      301 cacttgaaga agaagctgtc ccataattgt tccaaaatgt tcaacatcaa tattcaagat
      361 ttcattctgg agacagtcat tcaggatgac tatgatactt ttgagaacct tcttgtatca
      421 aagggagatg aaaagaagcc acacatggtg ttcctgaaag gcatggctgg aattggcaag
      481 acgctgatgt tgaaaaatgt aatgctggcc tgggcaaaag gtctggtgtt tcaaaacaaa
      541 ttctcataca ccttctactt ttgttgtcaa gatgtgaagc agttgaagac agcaagcctt
      601 gctgaactta tctccagaga gtggcccatc tcctcagctc ctatagagga gattctgtcc
      661 caacctgaga aactcttatt tatcattgac agcttggaag ggatggaatg ggatttaacc
      721 aaacaggaat cggagctgtg tggtaactgc acggagaagc agcccgtgag tttactgctg
      781 agcagtttgc tcaggaggaa gatgctcccc gaatcctctt tcctcatctc cgctacccca
      841 gagacttttg agaaaatgga ggacaggatt cggtgcacag atgtgaaaac agcaactgca
      901 ttcaatgaga gaagtattga gatatgtttc cacagattgt tccaagatag gaacacagcc
      961 cagaaggcct tcagtttggt aagagaaaat gagcagctat tcactctgtg ccaggcccct
     1021 ctgctctgct ggatggtggc cacctgttta aaaaaggaga tagagaaggg aaaagaccca
     1081 gtctccatct gccgacatat cacttccctg tataccactt atatcttcaa ttcattcatt
     1141 ccccaaagtg ccaaatatcc aagtaagaaa agccaagacc agctgcaggg cttgtgttct
     1201 ctagcggccg agggcatgtg gaccgacaca ttcgtgttta gtgaggaggc gctccggaga
     1261 aatggaatca tggactctga catccccaca ctattggaca ttggcatgct tggaaagatc
     1321 agagagtttg aaaattctta cctattcctc cacccatcgg ttcaggagat ctgtgctgcc
     1381 atcttttatc tgctaaagag ccatggagtc caccctagcc aggatgtgaa aagtgtagag
     1441 acagtcttgt ttatgttttt aaagaaagta aaaacacagt ggattctttg gggcagtttc
     1501 atcttcggcc ttttgcacaa atcagaacaa gaaaagctag cagtgttttt tggctaccag
     1561 ttgtcccaga aaatacggca taagttatat cagtgtctgg aaacaataaa tggcaatgta
     1621 gaactccaag aacaaataga tggcatgaaa ttgttttact gtctgtttga gatggaagat
     1681 gacgccttcc tcgtgaaagc agtgaattgt atgcagcaaa ttaacttcgt ggctaattat
     1741 tattctgatt tttttgttgc tgcctattgc ttgaaacgct gttctacact gaagaaacta
     1801 tccttttcaa cccaaaatgc cctgaatgaa gaattagaac agcagtatag ggaaaggcta
     1861 ctcatttgtt ggaatgatat atgctctgtg tttgtaagga gtaaaaacat ccagacactc
     1921 caaataaaag acactaattt cagtgagcca acttttcggg tcttgtatga atctctgaag
     1981 tacccaagct tccctcttag caaacttgtg gcaaataatg tgcacttctt tggtgataac
     2041 cacatgttct ttgagttgat tcagaatcac aatttacagt acttggacct cagctgctca
     2101 tccctgtccc ccaatggagt gaaactattg tttgatgtct tgaaccaggc agagtgcaac
     2161 atagaaaaac ttatggtagc acactgtaag ctttcacctg atgactgcaa gatctttggc
     2221 tccatcctga tgagcagcaa gacattgaaa attcttaatt tggcatccaa caatttgaac
     2281 caaggaatat cctcattgtg cgagggtttg tgccacccaa attgcgttct ggagtactta
     2341 gttttggcca actgttccct cagtgagcaa tgttgggact acctttctga tgttcttagg
     2401 aagaacaaaa ctctgaacca tctagacatc agctgcaatg acctgaagga taaaggaatc
     2461 aagattctct gtaaagctct gactctccca gactgtttca tgaagtcact atgtttgaaa
     2521 cattgtcaaa tcaccactag gggctgccag gacctggctg aagtactgag gaacaaccag
     2581 aacctgaagc acctacatgt ttcaaacaat aagctaaaag atgctggagt gaagctcttg
     2641 tgtgatgcta taaaacatcc caactgccac ttagtggatc tagggttgga ggcctgtgag
     2701 ataactggtg ccagtagtga gaacctttct tttgctttta tccaatgtaa gaccctgaag
     2761 aggctcaccc tgaaggggaa tgccttcgaa atcagtggga tggttttccc tccaaagttc
     2821 taa
//
