LOCUS       NM_001106220            3587 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus NLR family, pyrin domain containing 4A (Nlrp4a),
            mRNA.
ACCESSION   NM_001106220 XM_001067208 XM_008758899 XM_218188
VERSION     NM_001106220.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 31, 2023 this sequence version replaced
            XM_008758899.3, NM_001106220.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760389 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000001.1  75173325-75173426   c
            103-409             JAXUCZ010000001.1  75160397-75160703   c
            410-1982            JAXUCZ010000001.1  75132922-75134494   c
            1983-2141           JAXUCZ010000001.1  75123828-75123986   c
            2142-2306           JAXUCZ010000001.1  75123183-75123347   c
            2307-2474           JAXUCZ010000001.1  75120442-75120609   c
            2475-2645           JAXUCZ010000001.1  75113412-75113582   c
            2646-2816           JAXUCZ010000001.1  75104584-75104754   c
            2817-2987           JAXUCZ010000001.1  75095795-75095965   c
            2988-3587           JAXUCZ010000001.1  75086422-75087021   c
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..3587
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /note="NLR family, pyrin domain containing 4A"
                     /db_xref="GeneID:292545"
                     /db_xref="RGD:1561918"
     exon            1..102
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            103..409
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..3081
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein
                     4A"
                     /protein_id="NP_001099690.1"
                     /db_xref="GeneID:292545"
                     /db_xref="RGD:1561918"
                     /translation="MASFFSDFGLMWYLEELNKKEFMKFKEFLKQEILQLGLKQVSWT
                     EVKKASREDLASLLLKHYEEKQAWDMTFNFFQKINRKDLIKRAKREIDGYPKLYRAHL
                     KTKLTHDSSRIFNINIQDFLKEKFTKDDHDRFETLLQSKGTESKPQVVVLSGVAGIGK
                     TLMLKRLMLAWIEGLVFPYKFSYIFYFCCQEVKQLKTASLAELISREWPDPSAPIEEI
                     LSEPEKLLFIIDSLEGIECDLFKCDSELCDNCMEKQPVNILLSSLLRKKMLLEASLLI
                     STTPETFEKMEDRIEYTHVKIITGLNESDIKMCFHRLFQDRNRAQEAFSLVRENEQML
                     TICQVPVLCWMVATCLKTEIEKGRNLVSTCRRTTSLYTTYIFNLFIPQSAHSPSKKSQ
                     DQLQGLCSLAAEGIWTDTFVFTEEALRRNGILDSDIPTLLDIGMLGKMGKFENCYIFL
                     HPSLQEACAAIFYLLKSHGDHPIEDVKSVEALLFTFLKKAKVQWILGGRFIFGLLHES
                     EQKKLEAFFGHQLSQEIKHQLYQCLETISVNEELQEQIDGMKLFYCLFEMEDEDFLME
                     AMNYMEQINFVAKDYSDVIVAAYCLKHCYTLKKLSFSTQNILNEEHEHSCMENLLTCW
                     RHICSVLINSKDIQELQIKDTNLNEPAFSVLYNSLKYCNDTLKVLVENNVFFLCEKYL
                     FFELIQNCNLQHLNLNLTFLSHSDVKLLCDVLNQAECNIEKLEVAACNLSPDDCKMFA
                     SILMSSKTLKQLNLSSNILGKGISSLCKSLCHPDCILEHLVLAKCSLSDQCWDYLSDG
                     IRQNKTLNHLDISSNDLKDEGLKVLCRALALPNSVLKSLCLRHCLITTSGCQDLAEVL
                     RNNQNLTSLQISYNKIEDAGVKLLCDAIKQPNCHLEDLGLEACELTGACCEDLASTFT
                     QCRTLWGINLLNNTLDYTGLVVLCEALRQQKCTPHVLGLRITDFDNETQAFLVAEQEK
                     NPDLSILSGV"
     exon            410..1982
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            1983..2141
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2306
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2307..2474
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2475..2645
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2646..2816
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2817..2987
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
     exon            2988..3587
                     /gene="Nlrp4a"
                     /gene_synonym="RGD1561918"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaaaacaa aaatcattac ttgtccaaat cctcaaacac ttgcttcagc tggatccaca
       61 gacatcccta acaacttaat ctggcttttt ttcaactttg aaatccttgt actctatctt
      121 cctgaagaca caatggcatc tttcttttct gattttggcc ttatgtggta cttggaagag
      181 ttaaacaaga aagaattcat gaagtttaag gagttcctca aacaggagat tttgcaacta
      241 gggctgaagc aggtttcctg gacagaagtg aagaaagcat cccgggaaga ccttgccagc
      301 ttactgttga aacattatga agaaaagcaa gcctgggata tgaccttcaa ttttttccag
      361 aagatcaata ggaaggatct cataaagagg gcaaaaagag agattgacgg atacccaaaa
      421 ttataccgag ctcatctgaa gacaaagctg acccatgaca gttccagaat atttaatatt
      481 aatattcagg attttttgaa ggagaaattt accaaggatg accatgatcg ttttgagacc
      541 cttcttcaat caaagggaac tgaatcgaag ccacaggtgg tggtcctgag tggtgttgct
      601 ggaattggca agacactgat gttgaagagg ttaatgctgg cctggataga aggcctcgtg
      661 tttccataca aattctccta catcttctac ttctgctgtc aagaagtgaa gcagttgaag
      721 acagctagcc tggctgaact gatctccaga gaatggcctg acccctcagc tcccatagag
      781 gagattctat ctgaacctga aaaactctta tttatcattg acagcttaga agggatcgaa
      841 tgtgatttgt tcaaatgtga ttcagagctg tgtgataact gcatggagaa gcagccagtg
      901 aatatactgt taagcagttt gctcagaaag aagatgctct tagaagcctc tctcctcatt
      961 tccactaccc cagaaacttt tgaaaagatg gaggacagga ttgagtacac acatgtgaaa
     1021 ataataacag gacttaatga gagcgatatt aagatgtgtt tccacagatt attccaagat
     1081 aggaacagag cccaggaagc cttcagtctg gtgagagaaa atgagcagat gttgactata
     1141 tgtcaagtcc ctgtgctctg ctggatggtg gctacttgtc taaaaacaga aatagagaag
     1201 ggaagaaatc tagtctccac ctgccgacgg accacctctc tgtacactac ttatatcttc
     1261 aatttgttca ttccccaaag tgcccattct ccaagtaaga aaagccaaga ccagctgcag
     1321 ggcttgtgtt ctctagctgc agagggcata tggactgaca catttgtttt tactgaggag
     1381 gctctcagga gaaatgggat cctggattct gacatcccca cactattgga cattggcatg
     1441 cttggaaaga tgggaaaatt tgaaaattgt tacattttcc tccacccatc tctccaggag
     1501 gcctgtgctg ccatctttta tctgctaaag agccatggag accaccctat cgaggacgta
     1561 aaaagtgtag aggcactctt gtttacattt ctaaagaaag ccaaagtaca gtggattttg
     1621 gggggccgtt tcatctttgg ccttttacat gaatcagaac aaaaaaagct agaggcattt
     1681 tttggccacc agttgtccca ggaaataaaa catcagctgt atcagtgcct ggaaaccata
     1741 agtgtcaatg aagagcttca agaacagata gatggcatga agttgtttta ctgtctgttt
     1801 gagatggagg atgaagactt tttaatggaa gcaatgaact atatggaaca gattaacttt
     1861 gtggctaagg attattctga tgttattgtt gctgcctact gcttaaaaca ctgttataca
     1921 ctgaagaaac tatccttttc tacccaaaat attcttaatg aagaacacga acacagctgt
     1981 atggaaaatc ttctaacctg ttggcgtcat atttgctctg tgctcataaa cagtaaggac
     2041 atccaggaac tccaaataaa agacactaat ctcaatgaac cagcattctc agtcttgtat
     2101 aatagtttga agtactgcaa tgacaccctt aaagtacttg tggaaaataa tgtgttcttc
     2161 ttatgtgaaa agtacctgtt ctttgagttg attcagaatt gcaatttaca gcacttgaac
     2221 ctcaacctca cattcctctc ccacagtgat gtgaaactgt tgtgtgatgt cttgaaccag
     2281 gcagaatgca acatagaaaa actggaggta gcagcctgta acctttcacc tgatgactgc
     2341 aagatgtttg cctctatcct gatgagcagc aagactttaa agcaacttaa tttgtcatcc
     2401 aatatcttag gaaaagggat atcctcactg tgcaaatctt tgtgccaccc agactgcatt
     2461 ctggagcact tagttttggc caagtgttcc ctcagtgacc aatgttggga ctacctttct
     2521 gatggtatta ggcagaacaa aactctgaac catcttgata tcagctccaa tgatctgaag
     2581 gatgaaggac tgaaggttct ctgtagggct ctggctctcc caaacagtgt cctcaagtca
     2641 ctatgtttga gacattgtct catcaccact agtggctgcc aggacctggc tgaagtctta
     2701 aggaacaacc agaacctgac cagtctacaa atttcataca ataagataga agatgctggt
     2761 gtgaagctgc tgtgtgatgc tataaaacaa cccaactgcc acttagagga tcttgggttg
     2821 gaagcctgtg agctaactgg tgcctgttgt gaggaccttg cttctacatt tacccagtgt
     2881 aggactctgt gggggatcaa cctgctaaat aacaccttgg actacactgg cttggttgtc
     2941 ctgtgtgagg ctttgagaca gcaaaagtgt accccgcatg tacttggatt gcgaattact
     3001 gattttgata atgaaaccca ggcatttctg gttgctgagc aagagaaaaa tcctgacttg
     3061 agcatcctaa gtggcgtgtg agcagaagca gaaaacaagg atggaaattc tgatgcaaga
     3121 accaggggta tactctgaac tcaaactacc tccataaaaa gaaagtagga tcattatttt
     3181 ggcccattga atacaatgtt atagatcaat aatgttctaa taaaatatga tttctttgta
     3241 tcccttttgg atatgttttg caagacagat gtggtttttt tatttgtact acatattcaa
     3301 acatactata attacatttt attttccata ctggtatctt gagcacccaa taaagtgtta
     3361 agtatcttta agtagtgact tggaaatctc ttaaaatgat atttgcctgt tagtagatta
     3421 ctggagccat agagtaagtc taagcagtaa tggtacccta aaaggttgtt ggggaagttt
     3481 taattggctc tgcatgagaa acctttagca gagtgtctag actggacact cagaatatgg
     3541 aaactgttgc tgttttgcgc ttttttcatt aaataataat ttatgca
//
