LOCUS       XM_039097280            3382 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NLR family pyrin domain containing 2
            (Nlrp2), mRNA.
ACCESSION   XM_039097280
VERSION     XM_039097280.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 4, 2024 this sequence was replaced by
            NM_001426910.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3382
                     /gene="Nlrp2"
                     /note="NLR family pyrin domain containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:684545"
                     /db_xref="RGD:1589140"
     CDS             236..3382
                     /gene="Nlrp2"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein 2"
                     /protein_id="XP_038953208.1"
                     /db_xref="GeneID:684545"
                     /db_xref="RGD:1589140"
                     /translation="MEHSDQLGFNLKDVLKKLDKTELNNFKSTLKSCSLPQTMKQISK
                     LTMDLANGAQLAEILTDYCPNDWVKRVTFKILEEINRADLAELVMKQVEEAASKASEE
                     KVSSKPREPLKTSLFPQDFVQGDERPEHKHKKEWRNMYTEKWKKNFWPKCNKEIYVDT
                     ESYRTLLTLCNPKIEMPFAYTIVLHGPPGSGKTTMARRLMLEWSESKQAQSFSCAFYI
                     SCRKLNNSKPCTFAHLLSMNNPSWRYYMIRRLVLSEQFLFVVDGFDELTFPAGALLRD
                     ICGDWNTVKPVEVLLSSLLMRKMEPHSTLLVTTQTQSLHQIYLMVDQPVLVETQGFLE
                     PEKQEYFQQYFEDEEGEEEGEGEGKALRALKEVKCNEALFQMASLPAACGIFCLCLEL
                     GMKKGEDLALTCQTYTSMFLNFLCRVFLQEACDGHLNKQLQILFKKICILAADSLLEQ
                     VPILCEEDFLKLKLNLNKLHPVVYRCIFLEDSSCTNCLSFICLSIQQLLAAIIFVQEL
                     GQESKDVSKYSIQKMLSREARLKNPNLSGVLPFVFSLLNKTHIQELETIFGCQISMGV
                     KRKFLECELGENKPFLLLMDLQEIFSCLYESQEEEFVKEAMALFGEVSLHLKTNMDLV
                     HASFCLKNSQNLQTMFLKVEKAVFPENFATLESTAEDQRFQDKKCMLTLWTDFCDTFH
                     SNEKLAFLEIHESFLNSSSLEILCEKLSSAPCHLQKVVLKNISPDDAYEKLCLIFCGY
                     ETISHLTLQGGKLDSMLHSLCKVVKNPACNLKFLSLGSCSTTAQKWDDFFPALKANQS
                     LISLDLTDNNLLDKGVRLLCNTWKQSKCILQRVSLENCHLTEVCCKDLSSVLMVSQTL
                     THLSLAKNELGDNGVKKLCESLSFPKCKLQTLVLWSCNITSNGCHYLSKMLGQAPSLK
                     HLDLGLNRIGTTGAKFLCEALKSPRSNLKSLWLCGCSIIPTNCKDFSEILRSNKSLNT
                     LDLSQNVMGTDAVKIFCESLKLQICPLQTLRLKFDEANPSIQKLIQEMKESHPQLSIT
                     SDQVDPKKKSHSFPHFIF"
ORIGIN      
        1 tgtaagcagt tattttattt acattccaaa tgttgctccc accagagttc ttaattctat
       61 cccctttccc cttgagggag agaaatttgc tcttaaagga gcaggagact gtgttgatag
      121 cccctgctat tggcacaatg gtcaccagta tttgagttaa gaaagctgtc tcattgactc
      181 cattttcccc acagttctct ggagctggaa gctcagatct caccagtggt tcaacatgga
      241 acattctgat caactgggtt tcaacctaaa agatgtcctg aaaaagctag acaagaccga
      301 gttgaacaat ttcaagagta cattgaagag ctgttctcta ccacagacaa tgaagcagat
      361 ctccaagctg acaatggacc tggccaatgg agctcaacta gcagaaattc tcacagacta
      421 ctgccccaat gattgggtaa agagagttac cttcaagatc ttagaggaaa taaaccgtgc
      481 agatctagct gagttagtaa tgaagcaagt cgaagaagca gcatcaaaag catcggaaga
      541 aaaggtttct tctaaaccaa gagaaccctt gaagacatca cttttcccac aggatttcgt
      601 tcaaggagat gaaagaccag agcacaaaca taaaaaggaa tggaggaata tgtacactga
      661 aaaatggaag aagaacttct ggcccaaatg caataaagaa atctatgtgg atactgagag
      721 ctacaggaca ctcctgacat tgtgtaaccc gaagatagaa atgccatttg cttatacaat
      781 tgtgctgcat ggccctccag gctctggaaa aaccacaatg gcaaggaggc taatgctaga
      841 atggtcagag agtaagcagg cccagagttt ttcatgtgcc ttctacatca gctgcaggaa
      901 acttaataat agtaaacctt gcacttttgc ccacctcctc tccatgaaca atccctcctg
      961 gagatactat atgattcggc gtctagtcct gtcagaacaa ttcttatttg tggtagatgg
     1021 ttttgatgag ctgacattcc cagcaggagc tctgctccgt gatatctgtg gtgactggaa
     1081 cacagtgaag cctgtagagg tcttactgag cagtttgcta atgaggaaga tggaacctca
     1141 tagcacactg ctggtaacca cacaaacaca gtctttgcac caaatctacc tcatggtaga
     1201 tcagcctgtc ctagtagaaa ctcagggttt cttagagcca gaaaaacagg agtactttca
     1261 gcaatacttt gaagatgagg agggtgagga agagggtgaa ggtgagggaa aggcactgag
     1321 agctcttaag gaagttaaat gcaatgaagc tctcttccaa atggcctcac ttcctgctgc
     1381 atgtggaata ttctgcctct gtctggagct aggaatgaag aagggggaag acctggctct
     1441 gacatgtcag acctacacct ctatgttcct gaacttcctc tgcagagtct tcctacaaga
     1501 agcctgtgat ggccatctca acaagcaact ccaaatctta ttcaagaaaa tatgtatcct
     1561 ggctgccgat agtctcttag aacaggtgcc catactctgt gaagaagact tcttgaaatt
     1621 aaaattgaac ctgaataaat tgcatcccgt ggtgtacagg tgcatctttc ttgaggacag
     1681 ttcctgtaca aactgtcttt ctttcatctg cctcagtatc cagcagctcc tggctgccat
     1741 aatatttgtt caggaactcg ggcaagaaag caaggatgtc tctaaatata gtatacagaa
     1801 gatgctttct agggaagcaa ggttgaaaaa ccccaacctg tctggagtgc tgccatttgt
     1861 atttagcctc ctgaacaaaa ctcatattca agagctggag accatttttg gctgccaaat
     1921 atcaatgggg gtcaagagaa aattcctgga gtgtgagttg ggggaaaata aacccttcct
     1981 attactgatg gatctgcaag agatcttttc ctgtctctat gaatctcagg aggaggagtt
     2041 tgtgaaagaa gccatggccc tctttgggga agtctccttg catttgaaaa ccaacatgga
     2101 cctcgtccat gcttcattct gcctcaagaa ctctcagaac ttgcagacaa tgttccttaa
     2161 agtagaaaag gcagtcttcc cagagaattt tgctacactg gagtccacag ctgaggacca
     2221 aaggttccag gacaaaaaat gcatgctaac tctctggaca gacttttgtg acacatttca
     2281 ttcaaatgag aaactggcct ttctagaaat ccacgaaagc ttcctcaaca gctcctcact
     2341 ggagattctt tgtgaaaagc tgtcctctgc tccctgccat ctccagaaag tggtcctcaa
     2401 aaatatttcc ccagatgatg cgtatgagaa attatgcctc attttttgtg gttatgaaac
     2461 catctcacat ctgactttgc aaggtggtaa actggatagc atgcttcact cactgtgtaa
     2521 ggttgtgaaa aatccagcat gcaacctgaa gtttctcagc ctgggatctt gttctaccac
     2581 tgctcagaaa tgggatgact tcttcccagc cctgaaagcc aatcaatccc tgataagtct
     2641 ggatctcaca gacaataatc tcttggacaa gggtgtgagg cttctatgta atacttggaa
     2701 gcaatcaaag tgcatactgc agagggtatc gttggagaac tgtcatctca ctgaagtctg
     2761 ttgcaaggac ctctcttctg ttctgatggt cagccagact ctaacacacc ttagcctggc
     2821 caagaatgaa cttggagata atggagtgaa aaaactatgt gaaagcttaa gcttccccaa
     2881 atgcaaacta cagaccctgg ttctgtggtc ctgtaacatc accagcaatg gttgccacta
     2941 tctctcaaag atgctcggac aagcaccaag cctgaagcac ttggatctgg ggctaaatcg
     3001 cattggaacc acaggtgcaa agtttttgtg tgaggctttg aagagcccca ggagtaactt
     3061 gaaaagtttg tggctgtgtg gatgctccat cattccaacg aactgcaaag acttctctga
     3121 gattctcaga agcaacaaga gcctgaacac tctagacctg tctcagaacg tcatgggaac
     3181 tgatgcagta aagatattct gtgaatcctt gaaactccaa atttgtcccc tccaaacact
     3241 caggttgaaa tttgatgaag ctaaccccag tatccagaag ctgatccaag aaatgaagga
     3301 gagccatcca caattgagca ttaccagtga ccaagtggat cctaagaaaa agagtcattc
     3361 tttccctcat ttcatttttt ga
//
