LOCUS       NM_001109455            1881 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus NK6 homeobox 3 (Nkx6-3), mRNA.
ACCESSION   NM_001109455 XM_001062306
VERSION     NM_001109455.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S,
            Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A,
            Ginno PA, Domcke S, Yan J, Schubeler D, Vinson C and Taipale J.
  TITLE     Impact of cytosine methylation on DNA binding specificities of
            human transcription factors
  JOURNAL   Science 356 (6337) (2017)
   PUBMED   28473536
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Yoon JH, Choi WS, Kim O, Choi SS, Lee EK, Nam SW, Lee JY and Park
            WS.
  TITLE     NKX6.3 controls gastric differentiation and tumorigenesis
  JOURNAL   Oncotarget 6 (29), 28425-28439 (2015)
   PUBMED   26314965
REFERENCE   3  (bases 1 to 1881)
  AUTHORS   Choi MY, Romer AI, Wang Y, Wu MP, Ito S, Leiter AB and Shivdasani
            RA.
  TITLE     Requirement of the tissue-restricted homeodomain transcription
            factor Nkx6.3 in differentiation of gastrin-producing G cells in
            the stomach antrum
  JOURNAL   Mol Cell Biol 28 (10), 3208-3218 (2008)
   PUBMED   18347062
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473970.2.
            
            On Oct 4, 2007 this sequence version replaced XM_001062306.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN12840120,
                              SAMN13663610 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..1881
                     /gene="Nkx6-3"
                     /note="NK6 homeobox 3"
                     /db_xref="GeneID:685102"
                     /db_xref="RGD:1597780"
     exon            1..696
                     /gene="Nkx6-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             312..1100
                     /gene="Nkx6-3"
                     /codon_start=1
                     /product="homeobox protein Nkx-6.3"
                     /protein_id="NP_001102925.1"
                     /db_xref="GeneID:685102"
                     /db_xref="RGD:1597780"
                     /translation="MESNLQGTFLLNNTQLAQFSEMKAPMCQYSVQNSFYKLSPPGLG
                     PQLAAGTPHGITDILSRPVATPNSSLLSGYPHVAGFGGLSSQGVYYGPQVGSFSKTGN
                     EYPTRTRNCWADTGQDWRGSTRPCSNTPDPLSDTIHKKKHTRPTFTGHQIFALEKTFE
                     QTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKSALEPSSSTPRAPGGASGDR
                     AASENEDDEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHSV"
     exon            697..866
                     /gene="Nkx6-3"
                     /inference="alignment:Splign:2.1.0"
     exon            867..1881
                     /gene="Nkx6-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 taaaacttct gatggagggc ccccagactc agaggcagag aaaccgggtg ctctgattat
       61 ggagagcacc cctccttagg cccagtaggc agagagggaa cgcgcggaag gcctcccacc
      121 ttctctggac acctgacttt ccagaaggct gacgtaggtg ccccatctct aaggaagggc
      181 ctagccagag ggcagtcgga ggctcggggt gggatggggg gttctgattc tccaaatctg
      241 ccatgagatt ctgggccacc atttatagtg ctggccttta agggctcctc gacctcactg
      301 acctgaagac catggagtcc aacctgcagg ggaccttcct cctgaacaac acacagctgg
      361 cccagttctc cgaaatgaag gctcccatgt gccagtactc ggtgcagaac tccttctaca
      421 agctcagccc tccgggactt ggcccccagc tggcggctgg gacaccccac ggaatcactg
      481 acatcctgag caggccggtg gccactccga acagcagcct tctctccggc tacccccacg
      541 tggcaggctt tggtggactc agctcccagg gcgtctacta cggcccccag gtggggagtt
      601 tttccaagac tgggaacgag taccccaccc ggacccggaa ctgctgggca gacacaggcc
      661 aggactggag aggtagcact cggccatgca gcaacacccc agaccccctg agtgacacta
      721 tccacaagaa aaagcacacc cgccctacct tcacaggcca ccagatcttt gctctggaga
      781 aaacctttga gcagaccaag tacttggctg gccccgagcg ggcgaggctg gcttattcac
      841 tgggcatgac agagtcacag gtcaaggtgt ggttccagaa ccgccgaacc aagtggagga
      901 agaagagcgc tttggagccc tcgtcctcca cgccccgggc cccgggcggt gcgagcgggg
      961 accgcgcggc ctcggagaac gaggatgatg agtacaacaa gcccctggac ccagactcgg
     1021 acgacgagaa gattcgcctg ctgctgcgca agcaccgggc cgccttctcc gtgctcagcc
     1081 tgggcgcgca cagcgtgtga cgccgggcct gcggcgcgga ccagccttcc cctccccttt
     1141 ccgtgcagcc cgctgtgggc agggaccaga gaagaggagt tccgggggga gggggtggaa
     1201 aagaggaagg aagtggaaag aggaggagga agcgagaggg aaggaaggga aggaggagag
     1261 gaatggcgag tgccccgaga gaggagacgg cgcatctctc tgccattcct ccctctgggc
     1321 cccttgccca gtcggccctg ctcagcaggg aacctggcta tggaactctc cagatcccct
     1381 aaggaccagc agattaggga gtcacacaag gcactgcgcc cagtcgtagg ctgggactgc
     1441 aaagcaaaag gtggaggccg aggtccaggt gtgcttccca gtgatcccac tgctggggac
     1501 aggaggaaat ccacctctgc gaggggagcg ggtcctgaaa acagcaattc ttcaaacccc
     1561 gagtttcagg accctgggac ccccaactgc actttactgt caacgcagat cccgctgtat
     1621 caaggaagac tctgggaaag ggaggagggg aagccaggca gagggaaaac aggtacccac
     1681 caaggcatcg cggggcacct aagcacacca gagtttggga gcacctcagc aggatggaga
     1741 gaaagtctct gaacgccaca ctccaccagt aggagcacca gactgagaga acttcaggca
     1801 ggacaggggg gctgggagtg ctgttgggca cccaggcttt taaaaccaaa ctagaataaa
     1861 gatgaaaatc ccagaaacct c
//
