LOCUS       XM_039106629            2471 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NK2 homeobox 4 (Nkx2-4), mRNA.
ACCESSION   XM_039106629
VERSION     XM_039106629.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106629.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2471
                     /gene="Nkx2-4"
                     /note="NK2 homeobox 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 9 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:366213"
                     /db_xref="RGD:1304985"
     CDS             739..1800
                     /gene="Nkx2-4"
                     /codon_start=1
                     /product="homeobox protein Nkx-2.4"
                     /protein_id="XP_038962557.1"
                     /db_xref="GeneID:366213"
                     /db_xref="RGD:1304985"
                     /translation="MSLSPKHTTPFSVSDILSPIEETYKKFGGVMDGAPPGLGAPLGA
                     AAYRAPPTGPSSQAAAVAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFP
                     HSAMGSYCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANTDPRYSSISRFMGPSAGV
                     NVAGMGSLTGIADAAKSLAPLHAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPERE
                     HLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPPSPRRVAV
                     PVLVKDGKPCQNGAGTPTPGQGGQQPQAPTPASELEELSSSPPALHGPGGGLAALDTA
                     TGDYGGGVLGANLLYGRTW"
ORIGIN      
        1 tttgagctaa tttggaagtg tccgttaggt tgcctacaaa atgatgcttt aaaggatcta
       61 acgatgcata aattagagag ccctacaatg ccagaggact gtcattgtac ctctcctctt
      121 tatctgctct tatggtggga cccaagagcc tttttttttt ttttaacact ttagctgatg
      181 gagccagtga ggggctggta gctagaaagg aggtgagccc tgcaaatcat ccccctccca
      241 aacttaacag ctgtttgttc tcccccaccc cccaccctcc acgttgtact gaactttgct
      301 acaaagtcac tttaggaaaa ctcccagtat gcacgaaaca agcgtgggtc tttcagtggc
      361 ctcagagttt ttatttctcc agggctaagg taacctggat aggagagcga aggatggaga
      421 tagaaagggg aggtgatatt ttcaagaaac acccaactgg ccctttacct tttttgcctc
      481 cgttatgggg aaggggggtg agagaaaaag atgtcaatga ccattgtttg ctcgttgggg
      541 atattgctcc gccccccgag tctgtcgtaa acctggcgct ggactaaaat aaacccaaga
      601 tcccgcagct cgggggctcg ccgcgccgcg gacagctctc cactggcgct gccgccgggc
      661 cgaagtggcg gcgaccagcg gccgccgcgt cccgcccgcg cccgccccgg gcccccctac
      721 ctggctgtcc gccgagccat gtcgttgagc cccaagcaca cgacgccctt ctctgtgtcc
      781 gacatcctga gccccatcga ggagacctac aagaagttcg gcggcgtcat ggacggtgcg
      841 ccgcctggcc tgggggcgcc cctgggggcc gccgcctacc gcgcgccacc gactggcccc
      901 tcctcgcagg cggcggccgt ggccggcatg cagccgcccc acgccatggc cggacacaac
      961 gcggcggcgg cggcagcggc agcggcagcg gcagcggcgg cggccgccac ctaccacatg
     1021 cctcccggcg tctcgcagtt cccgcacagc gcaatgggca gctactgcaa cggcggcctg
     1081 ggcaacatgg gtgagctgcc cgcctacacg gacggcatgc ggggcggcgc ggcggccgcg
     1141 gccaccggct ggtacggcgc caacacggac ccgcgctact cgtcaatctc caggttcatg
     1201 gggccgtcgg cgggtgtgaa cgtggccggc atgggttcgc tgaccggcat cgcggacgcc
     1261 gccaagtctc tggcaccgct gcacgcggcc gcgccgcgaa ggaagcgccg agtgctcttc
     1321 tcgcaagctc aggtctacga gctggagcgg cgcttcaagc agcagaagta cctgtcggcg
     1381 cccgagcgcg agcacctcgc cagcatgatc cacctgacgc ccacgcaggt caagatctgg
     1441 ttccagaacc atcgctacaa gatgaagaga caggccaagg acaaggcggc acagcagctg
     1501 caacaggagg gcggcctggg tcctccaccg cctccgccgc cgccgtcgcc gcgccgcgtg
     1561 gccgtaccgg tgctggtgaa ggacggcaag ccgtgccaga acggcgcggg caccccgacg
     1621 cctggccagg gcggccagca gccgcaggcc ccgacgcccg cgtcagagct cgaggagctt
     1681 tcgtccagcc cgcccgctct gcacggtccc gggggcggct tagcggccct ggacaccgcc
     1741 accggggact atggcggagg cgtgctcggc gccaacctgc tctatggcag aacgtggtga
     1801 tgagcccccg ggggtctgcc tgcgactcgc aggatccgcc aagaaactgc aagaacggat
     1861 ggggaaatgt acagaagctg gccctttagt gcatggagat aagaacgaat gagtcgcgaa
     1921 gagggtcagt ctgctctgaa cctctttact gggggtggga gaggcgacag ctccagaccg
     1981 aataatgtga caccacactt tgaggtggtg atttctcttc tttcagaagt tcctaagtta
     2041 tgcgaagaac tgacgggaat ccacattcac cacgttccga accaaagctc tcagagtttt
     2101 agaagttgga aactttgttg gtgtttgtat ctctataaat caaccagctt tcacgatgaa
     2161 tccttgaagt ggaatttatt ttgggagatt aatttgcaaa gcccctcccc taagtgcaat
     2221 ttcgttaatg cttgattgaa agtaaattga attgtagccc aaaatggatc atatacacag
     2281 caacatgatt gctgaggaat aactgccatt tgggtgaaat agagaaatgg aataaaaaga
     2341 attgaaatac taattatatg gatcgttacc gtttttacat ttaaatgctg attttaaaat
     2401 atttttgtta attattaggc aaccaagtaa ttgtatattg tcccagaaga gcacaacccc
     2461 cacccacccc a
//
