LOCUS       NM_001170476            3362 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus NK1 homeobox 2 (Nkx1-2), mRNA.
ACCESSION   NM_001170476
VERSION     NM_001170476.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 13, 2022 this sequence version replaced NM_001170476.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06680412,
                              SAMN06680421 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-317               JAXUCZ010000001.1  196821055-196821371 c
            318-3362            JAXUCZ010000001.1  196816491-196819535 c
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..3362
                     /gene="Nkx1-2"
                     /note="NK1 homeobox 2"
                     /db_xref="GeneID:293568"
                     /db_xref="RGD:1306744"
     exon            1..317
                     /gene="Nkx1-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..1021
                     /gene="Nkx1-2"
                     /note="NK1 transcription factor related, locus 2"
                     /codon_start=1
                     /product="NK1 transcription factor-related protein 2"
                     /protein_id="NP_001163947.1"
                     /db_xref="GeneID:293568"
                     /db_xref="RGD:1306744"
                     /translation="MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPPVRLAAL
                     EAKKSLVEVEAGEDACSGNPIGSQETPDAVGGGTDPASPVEGSEAEEEEEAEDAGRAQ
                     RPERWQGAHAGSLEAGAVAVGTEESGADGLPASPGSPGSPRPRRRRAESSCAKPRRAR
                     TAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA
                     DGAVQAGGSAPQPGTPNAVTGGGGSATGSSPGPPVPGALPFQTFPTYPATNVLFPAAS
                     FPLTTTATGSPFTPFLGPPYLTPFYAPHL"
     exon            318..3362
                     /gene="Nkx1-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttcgcggc tggagagctg tggccgaacc gctgctgaag ataaggttga acgcatccat
       61 cccggacccc gcgcggctgg cctccaaccc gcggaagacg ggcatgctgg catggcagga
      121 cggcggggcc aaggcggccc cctctcacca caagatctcc ttctcggtcc tggacatctt
      181 ggatccgcag aaattcacgc gagctgctct cccgcccgtg cgtctcgcag ccctggaagc
      241 caagaaaagt ttagtggagg tggaagcagg tgaagatgcc tgctcgggga atccaatcgg
      301 gtcacaggag acccctgatg cggtgggcgg aggcactgat cccgcgtccc cggtggaagg
      361 ctctgaggcg gaagaggagg aagaagctga ggatgccggg cgcgcgcagc ggccagagcg
      421 ctggcagggg gcccacgcgg gctcattaga ggccggggca gtggcggtgg gaacggagga
      481 gagcggcgcg gatggcctcc cggcgtcccc cggctctccc ggttccccac ggcctcgacg
      541 ccggcgagcg gagtccagct gcgccaagcc acggcgagca cgcaccgcct tcacctacga
      601 gcagctggtg gccctagaaa acaagttccg agccacgcgc tacctgtcgg tgtgcgagcg
      661 cctgaacctg gccctgtcgc tcagcctcac ggagacacag gtcaaaattt ggtttcagaa
      721 ccgcaggacc aagtggaaga agcagaaccc aggggctgac ggcgctgtgc aggcgggagg
      781 cagtgcgcct cagcctggga cacccaacgc ggtgacgggg ggcggtggta gtgccactgg
      841 gagtagtcct ggcccgccgg ttcccggcgc tttgcccttt cagactttcc ccacctatcc
      901 tgcgaccaac gtcctcttcc ctgccgcctc cttcccgctg acgaccaccg ccaccgggag
      961 tcccttcact cctttccttg gtccccccta cttgacccct ttctatgctc cacacctatg
     1021 aatctggtac tgctgctcag tcagaattca cgagtgatca agtgtggtaa cgcgggtccc
     1081 cgcttcacag aggggcactg actgccccct cctggtgtgc tggtgactat gtaccccttc
     1141 cctctagctg ctcatgacac caccagaggg cgaggagaag ccacctgctg gactacatac
     1201 aaccacacaa gccactgagg ggctcgagaa ggtatccaga acaggttgtt aaaaaccttc
     1261 cagcttctgg acctcattct tcgctttcat ttactccgag ggctctgctt ttaaagtgtc
     1321 tgtgtagtca gtaccaggtt aataggagtt cccaggatgg aggatggaga ccggagggag
     1381 ccaagatgct ctgggcacca gttgctagca ccaaggactg aatctttaca ggttgcagta
     1441 caaacaaaga gaaggaaact ttccttcctg gcggtggcag tggctcagca caatactccc
     1501 aaatcctgaa caaagctgga gagaaactca aagcagatgc aactgttttg tgggctgttt
     1561 tcaagatgca gaactcagca tctctagatc ttcatgtgaa attcagactt gagccagttc
     1621 cagaagttaa ctacgtagct tgttcttcag aaagccacag ccttactttt tttggtgagg
     1681 actccactag tgcccccgaa gttgttcagc actgtaaata gactgaccca gagaagaaga
     1741 caccactctg ttgcctcaca ggttttgaga acagcttgac tcgaccacag cagtgccctg
     1801 aatgcacaga aagaacagta aagggagcga tgactcaaag gctatcctga agtctgcgtt
     1861 cgcactgtca cgatgtgcag tgcttggtgc ttacctgtcg gtcctgctac accttcatgg
     1921 acttccaaac tgacgagctc cagcagcaga cattgcactc aggcatttaa ctgtatttct
     1981 gaaagcacaa acataaccta tttagataac ctgagattct gacttgaaaa caattcttgc
     2041 tctaaataga ttttttcccc ctttatgatg gggaagaagc aaaagttgta aggggccggg
     2101 aaaagaaata cttgctaact gtaaggagtt attgtggagg ccaaaacctt gtctggaatg
     2161 ggttcaaggg tacttatgtt ctaactgctg ctttctctgt taaaacaaag caaaggtact
     2221 ctgtaaactc aacggtttga aataccagtt ttctgtgtct tgtagtcaca tacctcagag
     2281 acccagatga ccccatctac cctattttgt gttccatcct tactttttta gtggtttgat
     2341 ggcagaataa tgtatttctt actattattc ctcagcaacc tgtaccatta aaaattaaac
     2401 atgcccgctg atggtggtgg atgcctttaa ttccagcaca ctagaggcag agggaggtgg
     2461 gccttgtgaa tttgaggcca gcctggtcta cagagctggt tttaggacat ccagggctat
     2521 acaaagaaac tgtgtcaaaa accaaaaagc ggggttgggg atttagctca gtggtagagt
     2581 gcttgcctag caagcgcaag gccctgggtt cggtccccag ctctggaaaa gaaaaaaaaa
     2641 gaaaaaacca accaaccaaa caaacaaaaa gcaaaaagca aagcaaaaca aaacaaaaca
     2701 aaaaaaatct aatcatcaat agctttaaat taagcataca cattggaatt ctgaacatta
     2761 gaacattgaa acaattcact ttattatcat gaggaatgct aggaaaatat cccttctttc
     2821 ctccaccttc agtgaagctt tcatgtcctg ggactgtaag atttctcagt atgagttaca
     2881 tcattgtata actgataatt agattctgct tcttctattc tgaagaacag tttctccaaa
     2941 tgctgtattg taacttctca aaggacagct ggtgccagag gagattagag acgaagttac
     3001 tgcagtaggg agcacagttt tattcaccat gtgtgctgat aaacgctcct tccctggcta
     3061 ctcgttctca acagcggaat ccatatctgt gaacagagaa cttcaaatat gcaaaggtct
     3121 gaacgaagag gtcaaaggtc tgtactaagt gggaaactgt gccccaggta ccagaatcac
     3181 gggcttcaga ggaggtaatg gcccagcctt ggctgtcatt accgagaccc tgcctcattc
     3241 cacatgttgt cagagtgatg tcggaaatgc gtgactttgg acatattaca aggcccagta
     3301 acatttcaac taacccccta gactcgtctc tattggtgtg ttagcctaat aaattctttt
     3361 tt
//
