LOCUS       XM_234082               1871 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NK1 homeobox 1 (Nkx1-1), mRNA.
ACCESSION   XM_234082
VERSION     XM_234082.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_234082.9.
            
            On Jan 21, 2021 this sequence version replaced XM_234082.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1871
                     /gene="Nkx1-1"
                     /note="NK1 homeobox 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 Proteins, and 72%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:298981"
                     /db_xref="RGD:1564874"
     CDS             1..1332
                     /gene="Nkx1-1"
                     /codon_start=1
                     /product="NK1 transcription factor-related protein 1"
                     /protein_id="XP_234082.6"
                     /db_xref="GeneID:298981"
                     /db_xref="RGD:1564874"
                     /translation="MSTSGPAAPGDIPALPPPPPPPEPGSGPAPPAPAATARDAMDGR
                     AELPIFPRAGVPPLAVSDTVPAVPDGAGAARPAAPPRPTSFSVLDILDPNKFNSRRRR
                     CVLLGPVVPATCAPCAPAACVPVPAASGRSPRAELERRALSAATGVAAATGAEPTSTG
                     DSYRADEAEANGYSSGSGRSPTADSEDEAPEEDEDEDQAPEVQDVQGTEEPRGGSGGL
                     GARGSGCSGAAEVEASPVDEAAAPGPRGNSPGAPGPPVTAAGAGNAGSTPQGAAVATK
                     PKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQ
                     VKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGAGLPGGLSPLSPSPPMGAPL
                     ALHGPAGYPAHSPGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHL"
ORIGIN      
        1 atgagtacca gcggcccggc ggcacctggg gacatccccg cgctgccacc gccaccgcca
       61 ccgcccgagc ccggctccgg gcccgcacca ccagctcctg cggctacagc tcgggacgct
      121 atggacggac gagctgagct gcccatcttc ccccgggctg gagtcccacc gctagcggtt
      181 agtgacactg tgcccgcggt gccagacggg gctggagcag cccggcccgc cgcgcccccg
      241 cgccccacct ccttctccgt gctggacatt ctagatccca acaagttcaa cagtaggaga
      301 cgccggtgcg tgctcctggg ccccgtggtg cccgctacgt gtgccccatg cgccccggcc
      361 gcgtgcgtcc cggtccccgc tgcctccgga cgctcgccgc gcgcagagct agaacgccga
      421 gccctttccg ccgccacagg agtcgccgcg gccacgggag ctgagcctac aagtactggg
      481 gactcttaca gggcggacga ggccgaggcc aacggctaca gcagcggcag tggtcgcagc
      541 ccgaccgcgg acagcgagga tgaagcgcct gaggaggacg aggacgagga ccaggcgccc
      601 gaggtgcagg atgttcaggg caccgaggag cctcggggag gcagcggcgg tctcggggcc
      661 cgcgggtcgg gttgctccgg agcggccgag gtcgaggctt ccccggtgga cgaggctgcg
      721 gccccagggc cccgcgggaa ctcgcccgga gccccgggcc cgcctgtaac tgctgcggga
      781 gcggggaacg cggggagcac cccgcagggc gccgccgtgg ccaccaagcc caagcggaag
      841 cgcacgggct cggactcgaa gtccgggaag ccgcggcgtg cgcgcaccgc cttcacctac
      901 gagcagctcg tggcgctgga gaacaagttt aaggccactc gctacctgtc ggtgtgcgag
      961 cgcctcaacc tggcgctgtc gctgagcctc acggagacgc aggtgaagat ctggttccag
     1021 aaccgacgaa ccaagtggaa gaaacaaaat cctggcgctg acaccagcgc gccgaccggc
     1081 ggcggcgggg gcccgggccc gggagcggga cccggcgcgg ggctgcccgg cggcctcagt
     1141 cccctcagcc cctcgccgcc catgggcgcg ccgctcgctt tgcacggccc ggcggggtac
     1201 ccggcgcata gtccgggagg gctggtgtgc gccgcgcagc tgcccttcct gtccagcccg
     1261 gcggtgctct cgcccttcgt gctgggctcg cagacgtacg gcgcgcccgc cttctacgcg
     1321 ccccacctct gaacctcggt gccaggatcc cagtggggac tgcaccataa ggcctcgtgg
     1381 ccagaggacc taaggcgagc gcggccatct cttttctaag gtttcagtcg ttggtcctgt
     1441 atatagccgg ttcctacaga agagaaattt ataaacgagt gtgcgcaggg gccaaacggg
     1501 aggctcccgt ggcctgctcc aagcactttg cagaactctt aataaaccac aggaagccac
     1561 gcgaggtttt tccgaaggct ctggcgccgt cggatgccta tcccgccttc ctgtccgttc
     1621 gagttcttac ccatcagcag ggactccaga gcccagttag gtctagtttc ctatttgtgt
     1681 tagtgtctaa tagtcactct ggtagcttgc accaagacat ccttctctct tggggatcgc
     1741 ccggagctgg accagcgtgg gtccctttcc cactgtctcc gaagtgaggc ctttccccct
     1801 cttcttgcag cctggcactg ctgagctcca aatggagcgc taatgttgct ctttgtcttc
     1861 tgtagcacca a
//
