LOCUS       XM_039082739            7004 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus natural killer cell triggering
            receptor (Nktr), transcript variant X1, mRNA.
ACCESSION   XM_039082739
VERSION     XM_039082739.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082739.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7004
                     /gene="Nktr"
                     /note="natural killer cell triggering receptor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 53 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 151 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100364165"
                     /db_xref="RGD:2321593"
     CDS             9..4559
                     /gene="Nktr"
                     /codon_start=1
                     /product="NK-tumor recognition protein isoform X1"
                     /protein_id="XP_038938667.1"
                     /db_xref="GeneID:100364165"
                     /db_xref="RGD:2321593"
                     /translation="MNSRDTCVQSRVLWRGAPRLALTGRRWCSVGDVRLRRRRQGVLR
                     SCRASSRRRPVAALAMGAQDRPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLC
                     SGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFIL
                     KHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTD
                     AASRPYADVRVIDCGVLATKLTKDVFEKKRKKPTHSEDSDSSSNSSSSSESSSESEVE
                     RERIRRRRHKRRPKVRHTKKRRKEMSGSEELRRKRTVSPEGYSERSDVNEKRSGDSNT
                     KREKPVVRPEEIPPVPENRFLLRRDVPAVAVEPEQNVPDVAPVVSDQKPSVSKSGRKI
                     KGRGTIRYHTPPRSRSHSESEDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGDKLSD
                     PCSSRWDERSLSQRSRSWSYNGYYSDLSTARHSDGHHRKRRKEKKLKHKKKAKKQKHC
                     RRHRQTKKRRIVMPPDLEPSRSPTHRVKSSSVGERRPHASSSSQCSSKRDWSKSDRDD
                     RSASTRSSRDSYRSKCHSGSDSRGSSRSRAASESSSRSHNRSKSRSSSRSGPRRTTSV
                     SPKKPAQLSENKPVKTEPLRSSMPQNGSVLVQPVAAENIPVIPLSDSPPPSRWKPGQK
                     PWKPSYERIQEMKAKTTHLLPIQITYNLTNVKGTVSSSSYHKREKASESDGSAYSKYS
                     DRSSGSSGRSRSKSSRSRSSSRSYTRSRSRSVPTSRSLSRSPSSRFHSPDKYSDGSRH
                     SRSSSYTSVSSDNGRRATFRSSRKKSITSNKRHRSSSEKTPHSTYAKGREKSSRHRKY
                     SESRSSLDYSSDSEQSHVQGVHSAPEKEKQGKVEMLNGKQGKGREEGKSKPEWECSHS
                     KKRTLKGDLPDHSRGDSVSKGKNCAGSKWDSESNSEQDVTKSRKSDPRRCSDKEEGEA
                     SSDSESEVGQSHIKAKPPAKPPTNTSLPGSDGAWKSRRSRSSASESESSCSNLGNTRV
                     EPQKQKHLKDSLKGEREKSKAKKDKRHKAPKRKQAFHWQPPLEFGEEEEEEEEVNGKQ
                     LMQDPKEKKHVSEKYEAVKDNTPKGEKTCNEGSCPNKPKMGTLEQDSLAEGEHDLNSC
                     PAPLKVEENSTSSPPSTQHLEEPVPGGGEDVLQTDDNMEICTPDRTSPAKGEGVSPLA
                     NHRLDSPEISLIPEQDEHIAHPRSGGKQESSVSESKTLGESGAKQDSSTSLTSPVEIA
                     GKKEGAEKSQVNLTDKWKPLQGIGNVAVSAATTSSTVDVKALSTVPEVKPQGLRIEIK
                     SKNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDGDSQSRSPHRSRSKSETKS
                     RHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYGSFHSHRTS
                     SRSRSRSSSYDPHSRSSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSIRSYG
                     SDSESDRSYSRHRSPSESSRYS"
ORIGIN      
        1 tagaccagat gaactctcgc gatacttgtg tccagtctcg cgtgctctgg cgtggcgctc
       61 cgcggctggc cctaacgggg aggaggtggt gttccgttgg tgacgttagg ctccggcggc
      121 gccggcaggg cgttctccgg agctgtaggg ccagctcccg ccgccgtccc gttgctgcgc
      181 tcgcgatggg cgcccaggac cggccgcagt gccacttcga catcgagatc aaccgggagc
      241 cggttggtcg aattatgttt cagctcttct cagacatatg tccaaaaaca tgcaaaaact
      301 tcctgtgcct gtgctcaggg gagaaaggcc ttgggaaaac aactgggaag aagttatgtt
      361 ataaaggttc tacattccac cgtgtggtta aaaactttat gattcagggt ggggacttca
      421 gtgaaggtaa tggaaaaggt ggagaatcaa tttatggtgg atactttaaa gatgaaaact
      481 ttattctcaa acatgacaga gcgttccttt tgtcaatggc aaatcgaggg aaacatacca
      541 atggttccca gtttttcata actacaaagc ctgctccaca cttggatggg gttcatgttg
      601 tctttggact ggttatatct ggttttgaag taattgaaca gattgaaaat ctgaaaacgg
      661 atgctgcaag cagaccttat gcagatgtcc gagttattga ctgtggagtg cttgccacaa
      721 agttgacaaa agatgttttt gagaaaaaaa ggaagaaacc aacacattca gaagactcgg
      781 actcttcttc caactcctct tcctcttcag agtcatcctc agaaagcgaa gttgaacgag
      841 agagaatcag aaggaggaga cataagagga ggccaaaagt cagacatact aaaaagagac
      901 ggaaagagat gagcggttca gaggaactga gaaggaagcg cacagtgagc cctgagggtt
      961 actctgagag gagtgatgtg aatgaaaaaa gatcaggtga ttcaaacact aaaagagaaa
     1021 agcccgttgt tcgaccagaa gagattcctc cagttcccga gaaccgattt ttacttagaa
     1081 gagatgtgcc tgccgtcgct gtggagcctg aacagaatgt tccagatgtt gcacctgttg
     1141 taagtgatca gaaaccatct gtatcaaagt ctggacggaa aatcaaggga agaggaacaa
     1201 ttcgctatca cacacctcca aggtcaagat cccactccga gtccgaagat gatgacagca
     1261 gtgaaacccc acctcactgg aaggaggaga tgcagagact gagagcctac aggccaccga
     1321 gcggagagaa gtggagcaaa ggagacaagc taagtgaccc ctgttcaagc agatgggatg
     1381 aaaggagctt gtcccagaga tcccgatcat ggtcctataa tgggtactat tcagacctta
     1441 gtacagcaag gcactctgat ggtcaccaca gaaaacgccg gaaggaaaag aagcttaagc
     1501 ataaaaaaaa agctaaaaag cagaaacatt gccgaagaca cagacagaca aagaagagga
     1561 ggatagttat gccacctgat ttggaaccct caagatctcc cacccaccga gtgaagtcct
     1621 ccagtgttgg agaaaggaga cctcacgcct cctcatcctc tcagtgctcg tcaaagcggg
     1681 attggtccaa atcagaccga gatgaccgga gcgcttccac ccgctccagc agagactcct
     1741 acagatccaa gtgtcattca ggatcagatt ctagagggag ctctagatca agggctgcgt
     1801 cagaatcctc atcgcgctct cataatagat caaagtctag atctagttcc aggtctgggc
     1861 cccgaagaac aacatcagta tcccccaaaa aacctgctca gctgagtgaa aataagccag
     1921 ttaagacaga acctttaagg tcatcaatgc cacagaatgg aagtgtgctt gtgcagccag
     1981 tggcagcaga aaacattcct gtaataccat tgagtgacag ccctccccct tctaggtgga
     2041 agcctggaca gaagccctgg aagccctctt acgagcgaat tcaggagatg aaagctaaaa
     2101 caacccactt gctgcctata caaatcacat acaatttaac aaatgttaaa ggaactgtga
     2161 gttcctcgtc ttatcacaaa agagaaaaag cttcagaaag tgatgggagt gcttattcaa
     2221 agtacagtga tagaagttct ggaagctcag gaaggtcaag gagcaagtct tctaggagca
     2281 ggtcatcctc cagatcatac acgaggtcaa ggtcacgaag tgtacctacg tcccgctcgc
     2341 tctctaggtc tccatcctct aggtttcact cgccagataa gtacagtgat ggctcccggc
     2401 acagcaggtc atcttcatac acttctgtta gcagtgacaa tggaagacga gccacattta
     2461 gatccagcag gaaaaaaagt atcacttcaa ataaaagaca ccgcagcagc tctgaaaaga
     2521 cacctcacag tacatacgcc aaaggcagag agaagtcttc acgtcacagg aagtatagtg
     2581 aaagcagatc atctttagat tactcttcag acagtgaaca gtcacatgtt caaggagtac
     2641 actcagcccc agagaaggaa aagcagggaa aagtggaaat gttgaatggt aaacagggga
     2701 aaggcagaga agaaggaaaa tccaagcctg aatgggaatg ttctcattct aaaaagagaa
     2761 ctctgaaagg tgatcttcct gatcactcta gaggtgacag tgtgtccaaa ggaaagaact
     2821 gtgctgggag taaatgggac tctgaatcaa actcagaaca agatgtgaca aagagcagga
     2881 aaagtgatcc ccggagatgt tctgataagg aggaggggga agcttcatca gactccgagt
     2941 cagaagttgg ccagagtcac atcaaagcca aacccccagc caaacctcca acaaacactt
     3001 ccctgcctgg cagcgatggt gcctggaagt ctaggaggtc acggtcttca gcctctgaat
     3061 cagagagctc ctgctccaac ttggggaaca ctagagtgga gccccagaag caaaaacatt
     3121 tgaaggatag tcttaaaggg gagagagaga aatcaaaagc caaaaaagac aaaaggcaca
     3181 aggctccaaa acggaagcaa gctttccact ggcaacctcc actcgagttt ggggaggagg
     3241 aggaggaaga agaggaggtg aatggaaagc aacttatgca ggacccgaaa gagaaaaagc
     3301 atgtctctga gaagtatgag gctgtgaaag acaatactcc aaaaggagag aaaacctgta
     3361 atgaaggtag ctgcccaaat aaacccaaaa tgggtacttt agagcaggac tcacttgcag
     3421 agggtgagca tgatctcaac tcttgccctg cacctctgaa agtggaggaa aactcgacca
     3481 gctctccccc tagcacccag caccttgaag agcctgtccc aggtggaggg gaggatgtgc
     3541 ttcagacaga tgacaacatg gagatttgca cccccgatag gacttcccct gcaaagggag
     3601 agggggtgtc ccctttagca aaccacaggc tagacagccc agagatcagc cttattccag
     3661 agcaggatga gcacatagca catcccagat caggagggaa acaagagagc agtgtgtctg
     3721 aaagcaagac cttgggtgaa agtggggcta aacaggacag ctctaccagc ttgaccagtc
     3781 ctgtagagat tgctggaaag aaggaggggg ctgagaagag ccaggtgaac ctcacagata
     3841 agtggaagcc actgcaaggt atagggaatg tggcagtgtc tgctgcaacc acatccagca
     3901 ctgtagatgt aaaggctttg tctaccgtgc ctgaagtgaa accacaaggc ttgagaatag
     3961 aaatcaaaag caaaaataaa gttcggcctg ggtctctctt tgatgaagta agaaagacag
     4021 cacgcctgaa tcggaggcca cggaatcaag agagttccag tgatgagcag acacctagtc
     4081 gggatggcga tagtcagtcc aggagtccac acagatctcg aagtaaatct gaaaccaaat
     4141 ctcgacacag aacaaggtct gtctcataca gtcactcacg aagtcgatct agaagttcca
     4201 cctcatctta ccgatcaaga agctactcta gaagccgaag caggggctgg tatagcagag
     4261 gccgaacccg cagccggagc agttcctatg gaagtttcca tagccacagg acatccagca
     4321 ggagccggtc caggagcagc tcctatgacc cccacagccg ctccagcaga tcctacacct
     4381 acgacagcta ctacagccgg agtcgtagcc gcagccgcag ccagaggagt gacagttacc
     4441 atcggggtag aagttacaac aggcggtcca ggagtattag gtcctatggc tcggacagtg
     4501 aaagtgacag aagttactct cgtcaccgga gccccagtga gagcagcaga tacagctgag
     4561 gtgtctctgt acaggttgtg tcttaactgt aaatacctgg taacttaaag tgtacgaaac
     4621 tggacggcaa tctgttgtgt gttagtctta gacctcaatc cagtagtggg tatttcttgt
     4681 cacttgctta catgtgtgca gaagaattta aagtgcagat gtccctagaa atatttttat
     4741 gccccatttt acagtaggca actatggaat tttcattttc ttgaatcaag aaataataaa
     4801 tttgatgtta agtataattt gcagtgttac tgtaggtagg ttttctatgt atcacattgt
     4861 ccatagaatc caggtttctt tttgtcagtg tttcaggttt tagtgtccat gctgccagac
     4921 agatttgtgg agagctgtca caagacacat gtttctgtgt ccccatgctg gttgtcttct
     4981 ctatacgctg tcagatcaga ctgtccacat ccgtattgat tatggccagg tgtgcagggt
     5041 ggtagcccat accaccatgt ctgcagcagt ccgttccagc tgtgaacacc cacactgtct
     5101 aagggctctg ccttctcaca gtgaatgcca gaagctcaga tagtgactgt gttgccaccc
     5161 cagctcctgc tttggtgctt ggtgcctttg gcccctcata cgtcgtatca tcatttacag
     5221 catttcccga tgccaggaaa tgaattgtga tttttttttt ttttaattca ctggcaccaa
     5281 aaattatttc ttctgagctg gattcactat gggtgtaggg gcttctccca aacacagata
     5341 tgtggtgcag gtcccttgaa acagaacctg taagactggt catcttgttc tgcacgtgtg
     5401 ctaaagagcc agctacagat ggggcttcag acgtcactct cactgtgtca gcagcagcag
     5461 ccccgcctca gccatctgtt ctgttcgtgt tgagacccca ctggctccag gaagttctgc
     5521 ctgatggagg agacccagga cagaagttgg ggacagacgg gtggcaggcc ccaggaagaa
     5581 tctaacctgt caacctgtca aaactagtgt gggtttgttt ctttgtttta ctctttagtt
     5641 cacattcttt ccccaagtgt acttaatcac cttagtgccg gtttaatcca gttcacagaa
     5701 ttcctgtcag gtatatggtg tagaagtcta taccatccta tttcacccag acctggctgg
     5761 tgtatttagg aagagaaaaa gccttgggat cttactaatg tcctggtcaa attgagggcg
     5821 ggtactgggt gtatgaaaat agtcttccag ggccatgtgg ctcagtgata gatagcatgt
     5881 gcttagcacg catctagcta tgggttcgga gattggcacc ccacaaatgc tgctgtcact
     5941 ctgatgtgtg taaacagccg gctgttgttc accatatctg taaattagtt aattagaaag
     6001 cgggataaca tcagaactca gtgcttggca gattaaatat gtggtttata gtgagtggtt
     6061 cctcccccaa cccccacccc ctttaaagtt gcctacaaag aagggtgttt gaatctagta
     6121 ttcgctggga agaatgcatt caagaggaca aacacactga caaatggaat tagtaagaaa
     6181 aggtcactat tgggccatat attattgttc ggttgttgcg tacgtaacaa gtcatcacaa
     6241 atttctcagc ctaagagtgc ccgtgtgtca ttgactatca ggcatggtag gttcagaggc
     6301 tcaaggctat gactaagggc tggaagggtg cattcctcac agcgactctg ggaaggagtg
     6361 actttctcat agactgcagc tggggctcta gaccccttgg aggatgcccg catcccctgc
     6421 tgtagacctt gccatgatct tcaaccaaca gagacccttt gaatcttcgt ctttcttcaa
     6481 aatctctgcc ttcctcctgc tttaagggtc aatgtaacta taccaaaccc cagagataaa
     6541 tctctacttg cagtcccatg gccccagagg agttagagac attggcaggt tctggggatt
     6601 agcataggga gaggaagggc atccacctac cacctactgc cactgtggac agggtttaac
     6661 ctgtaccaga caggcgctca tattcagtag tgtcagcctt gctgtttata cccaagtgaa
     6721 ctacagaaat ggcttttctt cctaaccagg atcattctgt attttgaagt tattttttta
     6781 ataaaattga attatgttgt gtaatgtgct taatagaaaa tgctttattg gatgattttg
     6841 taacatcctg tttactgcaa gtggcatagt tgatattgtt caaaaatgta gaaaatactt
     6901 ttgtacatac tagcagtgtc taatttgtat atacttctat taaatttctc tacaacttga
     6961 aaaggctctt gtaaaaatga aaatacatgc aaaatttgag tctg
//
