LOCUS       XM_039100836            5310 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NTPase, KAP family P-loop domain
            containing 1 (Nkpd1), transcript variant X2, mRNA.
ACCESSION   XM_039100836
VERSION     XM_039100836.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100836.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5310
                     /gene="Nkpd1"
                     /note="NTPase, KAP family P-loop domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:680440"
                     /db_xref="RGD:1591760"
     CDS             1658..4132
                     /gene="Nkpd1"
                     /codon_start=1
                     /product="NTPase KAP family P-loop domain-containing
                     protein 1 isoform X2"
                     /protein_id="XP_038956764.1"
                     /db_xref="GeneID:680440"
                     /db_xref="RGD:1591760"
                     /translation="MQKNYNVHFTKNARAPNEQHFLDPELGHQKGCCRQCYQDLVATH
                     THGPYQLSPQAHWQQTYRSHRGGSGCRRCPQPLILQRQRQQQKRQPPSFPPSPQRQRL
                     CPVRGAQKGSPAIAAARMGPASAPQPATSSPTAVPPTASSGPALPSAAGALLEPSEPT
                     EARPLPAPAACGSFTSYGADILTEDDVYCSCLAKTLCHVPVPVTVGFYAPFGCRLHLM
                     LDKIMTLMQQEAAQRESEELQRVQWQPRPVRGWGVPQLLWFLVFLQPVITELHLRRRN
                     VRFLFIRFSAWQYAGTDKLWAGLVTTLCEGIRHHYGALPFSVYSVLGNKPCGPRDGLC
                     QREWHCRRRVCLALLALLAALCLGVGLLYLSLGGHAPGHAERGVLKALGGAATTLSGS
                     GLLMAVYSVGKHLFVSQRKKIERLVSREKFGSQLGFMCEVKKEVELLTDFLCFLEIYQ
                     RRRLRVVLEVTGLDTCYPERVVGVLNAINTLLSDSHAPFIFILVVDPSILAACLESAG
                     NMKGTADNGYLFLNRTVTLPFSVPVMGRRTKLQFLHDAVRSRDDLLFRELTIKLQPQS
                     PGVLGAGEGTQLLAVETQADTERTQGRVDAEAARRIQEALCCLHDEGDCLYEYVPDNV
                     VSMRRIVNTVPITVRLLQQQQHQQPDRVGPTPRHAVAWVVLANQWPCRLSWVLQCLED
                     RQQAGGAPEGRARLWDVFCDNSRELHTMTKALQNVLDLDGDPELFERFLGTDFPFTVA
                     DAQSLLRCTVNLDHSIRRRMGLIRAVSALKPPSPPKSPSRDGPQAGPRATIAAGTSQA
                     GQGSGHSREAHQTRDRTHGVKPRPMA"
ORIGIN      
        1 ttctgattgt atttgtagca tccggggctg cccttgggct taagcctgca ttctgctgcc
       61 cactgctgca tgggtaagca ccaggcccag ggactacaaa tggaggtggc tgagaagtaa
      121 caagggctgc tggctcttct gttaatttaa ttgtgtgcgc ttgtgctcaa gcgcatgtgc
      181 actgaatcca gtcctctgca agaacagtta gtgctgttaa ctactgagcc ttccttccaa
      241 tccgccaccc ctaagacaag acctctcagg gtgggacagg tgtgtcagaa gttaagagtg
      301 tttgctgccc ttgctgagga cccaagttcg catcccatca cccacacagt ggctcacaac
      361 cacccataac tccagttcca ggggatccca tgccgtgttc cgacctcaca taaacgcaag
      421 caaagcatcc atacacataa aatgctgtaa aaagatcagg tctcatgcag ctcaggtggc
      481 cttgaactca caaatggtcc tcctgcctca gcctcccacg tgatgacaga tgtgtgtcac
      541 agggtcagct ggttcgctgt ggctagggca tccacctctg tggagttggt ccaggtcctt
      601 agcctgcctc tccccagttt cctacaacta aactctttgt ctcccaattt acatagtgtc
      661 ccctgcctgg tccctccacc ttagtccctt ctcaggaccc agcagcctgg gatctctgtc
      721 cctttgccgc acagcctgtg agcaggagct ggcaccccac ggttcacctc aacaatccct
      781 gcctcctagg ggacaatccc taaagaagag gcttgaagga aaagaaactt cacaacagga
      841 ggaaggtggc caggcccaac agcaggaagc ccacatcccc accccagctg atgtgaggaa
      901 agagttctac agtataggat gtaccttgcc cagcaccatc ttggtcctat tagacacagg
      961 gcagagcccc ggaagtcacc acctgctttc aactccccac tctgtatggt ctggggcaaa
     1021 ggaagggctt tgtgtctccg ggcctcaatt ttctcatctg tgaagtgggc actaccgtgg
     1081 ctctgtggtt tctgatgata aagggaccta cggagtggcc aggctcagaa gccactccct
     1141 gtatgtctgt gctgttgcca gggttctgtg tgaggtgccc acagcagcac ctggtaaagt
     1201 gggtcagcta gtgctgtacc caagggccag ccccaggctg ggtggactgt ttgacaactt
     1261 caaaaagcag gtgccaacct ggcctattca gcaatgagga agctgaggcc cagagagatg
     1321 aagtcactga ggcacagtca caaagctggg ccacagagga actagcagct tgaatctatt
     1381 taagattcat tctgcctcct ccctaccaga agaggtgcca gaaacccggc gtgagggttg
     1441 ccgtgggctc tccaccccct cctgggttca tcctgtcagg ggcacccagt cctagagagc
     1501 agcaggtcgg acgcctgccc aaagggcggg gacacacgca ggagaaccgg ccgagcgggc
     1561 gccactgggc tccaaccagg cctgcgcggg gccacgggca gggagctggg gccgcggggc
     1621 caccaccagg actgggccac tgaagtcacg gcccgccatg cagaagaact acaatgtgca
     1681 cttcaccaag aatgcccggg cccccaatga acaacacttt ttggatcccg agttggggca
     1741 ccaaaaagga tgctgccgtc agtgttacca ggacctggtg gccactcaca cccatgggcc
     1801 ctatcagctg tccccccagg ctcactggca gcagacctac cgcagccacc gaggtggcag
     1861 cggctgtcgc cggtgtcctc agcccctcat tctgcagcga cagcggcagc agcagaagcg
     1921 acaaccccca tccttccctc ccagcccgca gcggcagcgg ctctgtccag ttcgcggggc
     1981 ccagaaaggg tcacctgcga tcgccgctgc ccgcatggga ccagccagcg ccccccagcc
     2041 tgccacctcc tcacccaccg cagtaccacc cacggccagc agcggcccag ccttgccctc
     2101 tgcagccggc gccctcctgg agcccagcga gcccaccgag gcgcggcctc tgcctgcgcc
     2161 tgcagcctgc ggctccttca cctcctacgg cgcggacatc ctgacagagg atgatgtcta
     2221 ctgcagctgt ctggctaaaa ctctgtgtca cgtgcccgtc ccagtgaccg tgggtttcta
     2281 tgctcccttc ggctgccgtc ttcacttgat gttggacaaa atcatgacgc tgatgcagca
     2341 ggaggccgcg cagcgtgaga gcgaggagct gcagcgcgtg cagtggcaac ctcggcctgt
     2401 gcgcggctgg ggcgttccgc agctgctgtg gttcctggtg tttctgcaac cggtgatcac
     2461 cgagctgcac ctgcggcgca ggaacgtgcg cttcctgttc atccgcttca gcgcctggca
     2521 gtacgcgggc accgacaagc tgtgggcagg gctggtgacc acgctgtgcg agggcatccg
     2581 ccaccactac ggcgcgctac ccttcagcgt gtattcggtg ctgggcaaca agccctgtgg
     2641 cccgcgcgat ggcctctgcc aacgcgagtg gcactgccga cgtcgcgtgt gcctggcgtt
     2701 gctggcgctg ctagccgcac tgtgcttggg cgtggggctg ctgtacctgt ctctgggagg
     2761 ccacgcgccg ggccacgcag agcgtggcgt gctcaaagcg ctgggaggcg cggccaccac
     2821 gctgtctggc tctgggctgc tcatggccgt gtactccgtg ggcaagcatc tgttcgtgag
     2881 ccagcgcaag aagatcgagc gcctggtgtc gcgtgagaag ttcggcagcc agctgggctt
     2941 catgtgcgag gtgaagaagg aggtggagct gctcacggat ttcctgtgct tcctggagat
     3001 ttaccagcga cgccggctgc gtgtggtcct cgaggtcacc ggactggaca cctgctaccc
     3061 agagcgcgtg gtgggcgtgc taaacgccat caacactctg ctgtccgaca gccacgcgcc
     3121 ctttatcttc atcctggtgg tggaccccag catcctggcc gcgtgcctgg agagcgcggg
     3181 taacatgaag ggcacagcgg acaatggcta cctgttcctc aaccgcacgg ttacgcttcc
     3241 cttctcggtg ccggtcatgg gccgtcgcac caagttgcag ttcctgcacg acgcggtgcg
     3301 cagccgggac gatctgctgt ttcgggagtt gacgatcaag ctgcagccgc agagtcccgg
     3361 ggtcttgggt gcaggcgagg gtacccagct cctggcggtg gagactcagg cagacaccga
     3421 gcgcacgcag ggccgcgtgg acgcggaggc ggcgcggcgc atccaggagg cgctgtgctg
     3481 cctgcacgac gagggtgact gcctatacga atacgtgccc gacaacgtgg tgtccatgag
     3541 gcgcatcgtc aacacggtgc ccatcaccgt gcgcctgttg cagcagcagc agcaccagca
     3601 gccggaccgc gtgggaccca cgccgcgcca cgcggtggcc tgggtcgtgc tcgccaacca
     3661 gtggccttgt cgcctcagct gggtgctgca atgcctggag gaccggcagc aggcaggggg
     3721 cgcgcccgag gggcgcgcgc gtctctggga cgtcttctgc gacaacagtc gcgagctgca
     3781 caccatgacc aaggccttgc agaatgtact ggacctggat ggcgaccccg agctttttga
     3841 gcgctttctg ggtactgatt tccccttcac cgtggccgac gcgcagagtt tactgcgctg
     3901 cacagtcaac ctggaccatt ccatccgtcg ccgcatgggc ctcatcaggg ctgtcagcgc
     3961 gctcaagccg cccagcccgc ccaagtcccc gtcccgggat ggtccccagg ccggtcccag
     4021 agccactatt gccgcaggca cgtcccaggc gggtcaagga tcaggacaca gtagagaggc
     4081 acatcagacc cgggaccgga cccatggggt caagccaagg ccaatggcct aagtccttta
     4141 atttcagggg tgtaaaggcc gcttggttgt ggggtggaga acaccagcca ctggggacag
     4201 caacatcctg ccctccctga tgacggtgtg aggtcagggc tgggctcaag agccatggtt
     4261 tatgggatgg ccacacactc tgatgacttt ggaagccaaa gggaggcagg tactagcttc
     4321 ctggattagg ctgctgctac accagtgtct gagtgaacgg aggagtcgtt gaggaacacg
     4381 ggagtcaaag aagcaataaa ggaagctgtg gaaagccagg gctgtctttc atgtcctgga
     4441 tttctggcta ggcgaggatg ccatccgacc cacctacttc ctccttaggg agccaggcct
     4501 ctggactgca tcctggcaac cgaagttggc atcccaggtg gtaggaggct tgcgggggcg
     4561 gtgggtgagg ctgcgggggc agggatgatg aagggcgagg gcaggttgac tcaggcaaag
     4621 gggagcaccc aggcctcagg ggatcccagg cctttgtccc cacaccctag cctgccctct
     4681 gtgggcaggg caggaactgg cacttcccag ggtggtgcct gtgacctcac caggtgggtc
     4741 tgagtggcac tgccttcctc agataggcag gtaactgtcc gagaggagcg gttgaggcac
     4801 ttgttttaca agtcactcct gggccactgg ctggacctgg ttaccgacta agaagccaca
     4861 tcgccagcag ggaagttgag gaacagggat tgggaaatga gagaatatag agtcagagca
     4921 aagccaggca ggagagcatg aactgtttgt ggctgggctg ggccctgccc agctaacgta
     4981 gtcagggatc aagaatgggt gtccctcctg tgggtggctc ctgagacccc agtggccgaa
     5041 tatgcagcca cacactcagg ctggggtttc tcatccagtg tggtgggtgg ggaagaagca
     5101 gcagaggtga ccaggcactg aatgacagag atcccaggcc cacatgtgga caagtctttc
     5161 accttctgtc ccagcactct agaaagaggc agaggcaggc agatctctgt aagttccaat
     5221 aagccagcct ggtttactgc gttctaagct agccagggct acatagggag acccccatct
     5281 tggtcagcca ataaaggttt ttgcttccaa
//
