LOCUS       NM_001107252            3267 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus NFKB inhibitor interacting Ras-like 1 (Nkiras1),
            transcript variant 1, mRNA.
ACCESSION   NM_001107252 XM_001067073 XM_223837
VERSION     NM_001107252.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jan 31, 2022 this sequence version replaced NM_001107252.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169080.1, SRR26360172.1973986.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               JAXUCZ010000015.1  9934366-9934538     c
            174-284             JAXUCZ010000015.1  9930859-9930969     c
            285-395             JAXUCZ010000015.1  9929514-9929624     c
            396-637             JAXUCZ010000015.1  9927856-9928097     c
            638-3267            JAXUCZ010000015.1  9924316-9926945     c
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..3267
                     /gene="Nkiras1"
                     /note="NFKB inhibitor interacting Ras-like 1"
                     /db_xref="GeneID:305751"
                     /db_xref="RGD:1308560"
     exon            1..173
                     /gene="Nkiras1"
                     /inference="alignment:Splign:2.1.0"
     exon            174..284
                     /gene="Nkiras1"
                     /inference="alignment:Splign:2.1.0"
     exon            285..395
                     /gene="Nkiras1"
                     /inference="alignment:Splign:2.1.0"
     CDS             302..880
                     /gene="Nkiras1"
                     /note="NFKB inhibitor interacting Ras-like protein 1"
                     /codon_start=1
                     /product="NF-kappa-B inhibitor-interacting Ras-like
                     protein 1"
                     /protein_id="NP_001100722.1"
                     /db_xref="GeneID:305751"
                     /db_xref="RGD:1308560"
                     /translation="MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGMEDCETLEDVYM
                     ASVETDRGVKEQLHLYDTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKK
                     EIDKFKDKKEVAIVVLGNKLDLSEQRQVDADAAQQWARSEKVKLWEVTVTDRRTLIEP
                     FTLLASKLSQPQSKSSFPLPGRKNKGNSNSEN"
     exon            396..637
                     /gene="Nkiras1"
                     /inference="alignment:Splign:2.1.0"
     exon            638..3267
                     /gene="Nkiras1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctagctctc agcagcgctc ctgagccgct gaggctgcga aaagtgagag gcggtgagct
       61 cgcgtgtgcc atcggcgcgg gaccggagga agcagatcgg ggacgggctc cagaggggcg
      121 tcttcggacc gcgctgaccc gcgtgccact atctcactac cctgctgtgt cagctcatct
      181 gttggagtcc agctcatgca gaagaccagg tgaaacaccc cccctcgtgg aactaagtaa
      241 ctaccggatt cttgcccact gttgggttag ttggactgca gacttgctgt cccaggagaa
      301 gatgggaaaa ggttgcaagg ttgtcgtttg tgggctgttg tccgttggga aaactgcaat
      361 tttggagcaa ctcctttatg ggaatcacac tattggcatg gaagactgtg aaacgctgga
      421 agacgtgtac atggcatctg tggagacaga ccgtggggtg aaggagcagc tgcacttgta
      481 cgacacccga ggcctgcagg aaggcgtgga gctgcctaag cactatttct catttgccga
      541 cggcttcgtt ctcgtgtaca gcgtgaataa cctcgagtcc ttccagagag tggagcttct
      601 gaagaaagag attgataagt tcaaagacaa aaaggaggtg gcaatcgttg tgttaggaaa
      661 caaactggac ctttctgagc agaggcaagt ggacgctgac gcagcacaac agtgggctag
      721 aagtgagaag gtgaagctct gggaggtgac ggtgacggac cgcaggacgc tgattgagcc
      781 cttcacacta ctggccagca agctttccca gccccagagc aaatctagct tccctctgcc
      841 agggaggaaa aacaaaggga actccaattc cgaaaactga gtcaagcctt gaaatgtctc
      901 tagcatgaca cagggttccg atttaatgtg gctcttcaca aacctcctct gggccttagg
      961 gaacccctaa gtggtaactt aatgcacttt aatgcaagct actggtttgc tgctgttgga
     1021 cattattttg tctttatttg aaacctgctc ttaaaatcga gttttgttat tctgcacctg
     1081 tcagtaataa taaacgttag agtatgcagt gtaccatggg aaggaaccct tccagcttgt
     1141 cagggactct catactcatt gtagttttat gcacatgcct tggcgtgacc ataagtcatt
     1201 actgtgtgtg tggagttggc tttctccttc catctacgca tgaatttcag ggctgtaact
     1261 caggtggcct ggctcgcctg gcaaagcacc ttctccactg agtcatctta acaggcccag
     1321 aattccgttt taaaaacgtt gactactcag ggctggggag attgctcagt agctaagatt
     1381 gaagctctca cagaagagcc aggtccagtt tatagcacct acatggtggc tcataaccac
     1441 ctataagaga gtccaaagga ttcagtgtct tcccttggtt tcttcagaca ttgcatgcag
     1501 ttagtgctca tgtacagatg cagggaaaac catacacacg tagaatgata gctaaacttt
     1561 tttaaaggtt aattatctaa tatctcagat tataaagctt ggcagtggct ttctttgtgc
     1621 agctaaattg tgccaatgac gacaatctgg acctctgagt taaactctca tttcacggag
     1681 gctttgctga cagaccacat gtggttttgc gtcgctcgct ctgttaagta taatcgatcg
     1741 taggttagca tgagtagctt ctgtattcag agccctgtct ttataagcta ggcctgtgct
     1801 gacgataaag tgaaatacta gagggtcttc agaaaacggt taggctgaag aatgaggaag
     1861 catccctttc ttctaataac ctcatcgtat acaataaaat gtcagaaata cagagttacc
     1921 actagtttta catattaatc tgagtttgta atttagttta tggaaaatct taccaagatc
     1981 cgagcagttt tggtcactgt attgaacaag attgccagac ctatgcaaag aactaggaaa
     2041 tgaactgcct ggtggttcca actgtaaatc aactttagcc atttacctga aaagcaaagt
     2101 gtgaaacaag gtgtagtaaa cacaggaagg caagtaaagt atggactctt cagtgcaatg
     2161 ctttcaactg tggctggctc agtccagtga gttcaagcca aggaccgccg tgtataatgt
     2221 aaaccattag cactattgcc acttgctttt ctgttggtgg cactgcagtc tgaacccaag
     2281 ggttcacaca catgcatcat taaccgtttt actttgtgag aaagggtctt aataaacaac
     2341 ccaagctttg aagttggaat ccttgtgccc tgaatactgg ggttatagcc accaggcttg
     2401 tccctcatcc ccctaaagac aaggttactg tataaccctg gctggttgga attatgtaga
     2461 ctaggctagc cttgacctcc aagtcctgct cagctgggat tagaagtgtg taccaccatg
     2521 ctgtcttggc caattcttta aaaaaaaaaa acaaaaacca aaaacttttc cggttatccc
     2581 tcaggttaag tcagtcctct agcctgccct tccaagtact tactttcagc tttttttctg
     2641 aggtatttta tttcaatccc tgcctggagt ttccgttttt ccttttgact acatttagat
     2701 cttgtgcttt aatatacatg gaattactta tgtttctaaa attgaagagt gaacatgtcc
     2761 tgggtcaatt ttttccctcc ctcggcccct ttgagacagg gtctcatgta gcctaggcta
     2821 gtctgaagcc cggcgtgtag ctgaggatga ccttgagctc taatccctgg cctccatccg
     2881 ccctgggaag aaggcctgtg tatactactg ttctcagctt tcacctgcat gagtctggag
     2941 gcttcccatg ggcttgtttc tcatgtgtct gctgccactt cctctgcaga tcagaaaatg
     3001 ctttgagaaa aaggcattgc agtgcatctt tgaagctcac ctggcttaca cagtttattg
     3061 tttttaagat atctccaggg ggctgaagcg atggctcagt ggtttaagag catggactgc
     3121 tcttccagag gtcctgagtt caattcccag cagccacatg gtggttcaca tccatctgta
     3181 atgggatctg atgccctctt ttggtgcgtc tgaagacagc tacagtgtac ttatatataa
     3241 taaataaaga attctttaaa aaaaaaa
//
