LOCUS       XM_039109850            1147 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nipsnap homolog 3B (Nipsnap3b),
            transcript variant X3, mRNA.
ACCESSION   XM_039109850
VERSION     XM_039109850.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1147
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /note="nipsnap homolog 3B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 23
                     ESTs, 1 long SRA read, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:313211"
                     /db_xref="RGD:1359688"
     CDS             277..816
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /codon_start=1
                     /product="protein NipSnap homolog 3A isoform X3"
                     /protein_id="XP_038965778.1"
                     /db_xref="GeneID:313211"
                     /db_xref="RGD:1359688"
                     /translation="MIGYWTVEFGGKINRVFHIWKYDNFAHRTAVRKALAKDKEWQEQ
                     FLISNLAFMDEQEVEITYLVPWCKIRTPPKEGVYELATFQMKPGGPALWGDAFKRAIN
                     AHVELGYSTLVGVFHTEYGALNRVHVLWWNDSADSRAAGRHWSHEDPRVVAAVRESVN
                     YLESQQNMFLIPTSFSPLK"
ORIGIN      
        1 gtctagcacg gacccaacta aagctgagga gcacacaagg aagcggaaag agcgcgtgtc
       61 ccgctgctcc gctgcggtct atctgggcag caccatgctc gcgctccgaa gcggcctgag
      121 gacggcgctg gccccgcggg ctctgacgcc tcaggcccca ggcaaagcga tgggacattg
      181 tatgaattcc gcacctactc tctgaagccc tcaaagacaa atgcgttcct gcagaatttt
      241 cagaaatacg ttcaccttcg gacagctcac tctgagatga ttggatactg gaccgtagaa
      301 tttggaggca aaataaacag agtgttccat atttggaagt atgataattt tgctcatcga
      361 actgccgtcc gcaaagcctt ggccaaggat aaggaatggc aagaacaatt cctcatttca
      421 aatttggctt tcatggatga acaagaggtt gagattacct acttggtacc ctggtgtaaa
      481 ataagaacac ctcccaagga aggagtctat gaactggcta cctttcagat gaagcctggt
      541 ggcccagctc tatggggtga tgcattcaaa agggcaataa acgcccatgt tgagcttggc
      601 tactctacac tagttggtgt tttccacact gaatatggag ccctcaacag agttcatgtc
      661 ctctggtgga acgacagtgc cgacagccga gcagctggga gacactggtc ccatgaggat
      721 cccagagtag tggctgctgt tcgggaaagt gtcaattacc tcgagtctca gcagaatatg
      781 ttcctgattc caacctcatt ttcaccattg aagtagtttc ctaccgagcg ctgagcattc
      841 ccatcacgga ggtgagatgc gtttccccca gacaatcgcc ctgttcattg tctgaaggag
      901 gtgctgagct accgcactgc cctctgcatg tctgagactt catgtatcct ttactaccag
      961 tcgctcagga aatgtttctg tcccttttca tgtctactgg atgtcagaaa gtggtgttat
     1021 tactccatgc cctggtactt cattgttctt ctgtggtttt atgattaagt cttgtcctca
     1081 aaatatgatt ttgaaatttt ttccctcaaa atatttggaa attaaataaa tacaatatct
     1141 gcctttt
//
