LOCUS       NM_001009422            1129 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus nipsnap homolog 3B (Nipsnap3b), mRNA.
ACCESSION   NM_001009422 XM_232955
VERSION     NM_001009422.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 1129)
  AUTHORS   Buechler,C., Bodzioch,M., Bared,S.M., Sigruener,A., Boettcher,A.,
            Lapicka-Bodzioch,K., Aslanidis,C., Duong,C.Q., Grandl,M.,
            Langmann,T., Dembinska-Kiec,A. and Schmitz,G.
  TITLE     Expression pattern and raft association of NIPSNAP3 and NIPSNAP4,
            highly homologous proteins encoded by genes in close proximity to
            the ATP-binding cassette transporter A1
  JOURNAL   Genomics 83 (6), 1116-1124 (2004)
   PUBMED   15177564
REFERENCE   4  (bases 1 to 1129)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 4, 2023 this sequence version replaced NM_001009422.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087643.1, FQ219476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               JAXUCZ010000005.1  72447907-72448022
            117-327             JAXUCZ010000005.1  72451108-72451318
            328-486             JAXUCZ010000005.1  72460100-72460258
            487-636             JAXUCZ010000005.1  72462980-72463129
            637-723             JAXUCZ010000005.1  72464510-72464596
            724-1129            JAXUCZ010000005.1  72464683-72465088
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q23"
     gene            1..1129
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /note="nipsnap homolog 3B"
                     /db_xref="GeneID:313211"
                     /db_xref="RGD:1359688"
     exon            1..116
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..800
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /note="nipsnap homolog 3A; NIPSNAP-related protein"
                     /codon_start=1
                     /product="protein NipSnap homolog 3A"
                     /protein_id="NP_001009422.1"
                     /db_xref="GeneID:313211"
                     /db_xref="RGD:1359688"
                     /translation="MLALRSGLRTALAPRALTPQVCSPFATGPRQSDGTLYEFRTYSL
                     KPSKTNAFLQNFQKYVHLRTAHSEMIGYWTVEFGGKINRVFHIWKYDNFAHRTAVRKA
                     LAKDKEWQEQFLISNLAFMDEQEVEITYLVPWCKIRTPPKEGVYELATFQMKPGGPAL
                     WGDAFKRAINAHVELGYSTLVGVFHTEYGALNRVHVLWWNDSADSRAAGRHWSHEDPR
                     VVAAVRESVNYLESQQNMFLIPTSFSPLK"
     exon            117..327
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            328..486
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            487..636
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            637..723
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            724..1129
                     /gene="Nipsnap3b"
                     /gene_synonym="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagcggaa agagcgcgtg tcccgctgct ccgctgcggt ctatctgggc agcaccatgc
       61 tcgcgctccg aagcggcctg aggacggcgc tggccccgcg ggctctgacg cctcaggtat
      121 gttcaccttt tgctacaggc cccaggcaaa gcgatgggac attgtatgaa ttccgcacct
      181 actctctgaa gccctcaaag acaaatgcgt tcctgcagaa ttttcagaaa tacgttcacc
      241 ttcggacagc tcactctgag atgattggat actggaccgt agaatttgga ggcaaaataa
      301 acagagtgtt ccatatttgg aagtatgata attttgctca tcgaactgcc gtccgcaaag
      361 ccttggccaa ggataaggaa tggcaagaac aattcctcat ttcaaatttg gctttcatgg
      421 atgaacaaga ggttgagatt acctacttgg taccctggtg taaaataaga acacctccca
      481 aggaaggagt ctatgaactg gctacctttc agatgaagcc tggtggccca gctctatggg
      541 gtgatgcatt caaaagggca ataaacgccc atgttgagct tggctactct acactagttg
      601 gtgttttcca cactgaatat ggagccctca acagagttca tgtcctctgg tggaacgaca
      661 gtgccgacag ccgagcagct gggagacact ggtcccatga ggatcccaga gtagtggctg
      721 ctgttcggga aagtgtcaat tacctcgagt ctcagcagaa tatgttcctg attccaacct
      781 cattttcacc attgaagtag tttcctaccg agcgctgagc attcccatca cggaggtgag
      841 atgcgtttcc cccagacaat cgccctgttc attgtctgaa ggaggtgctg agctaccgca
      901 ctgccctctg catgtctgag acttcatgta tcctttacta ccagtcgctc aggaaatgtt
      961 tctgtccctt ttcatgtcta ctggatgtca gaaagtggtg ttattactcc atgccctggt
     1021 acttcattgt tcttctgtgg ttttatgatt aagtcttgtc ctcaaaatat gattttgaaa
     1081 ttttttccct caaaatattt ggaaattaaa taaatacaat atctgcctt
//
