LOCUS       NM_001161846            1052 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus nipsnap homolog 3A (C. elegans) (Nipsnap3a),
            mRNA.
ACCESSION   NM_001161846 XM_001062201
VERSION     NM_001161846.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jun 20, 2009 this sequence version replaced XM_001062201.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.27864.1,
                                           SRR26360181.1326095.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-221               JAXUCZ010000005.1  72409425-72409645
            222-432             JAXUCZ010000005.1  72414145-72414355
            433-591             JAXUCZ010000005.1  72416067-72416225
            592-741             JAXUCZ010000005.1  72417188-72417337
            742-828             JAXUCZ010000005.1  72419729-72419815
            829-1052            JAXUCZ010000005.1  72419903-72420126
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q23"
     gene            1..1052
                     /gene="Nipsnap3a"
                     /note="nipsnap homolog 3A (C. elegans)"
                     /db_xref="GeneID:685080"
                     /db_xref="RGD:1583223"
     exon            1..221
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..905
                     /gene="Nipsnap3a"
                     /codon_start=1
                     /product="nipsnap homolog 3A"
                     /protein_id="NP_001155318.1"
                     /db_xref="GeneID:685080"
                     /db_xref="RGD:1583223"
                     /translation="MLALQSSLRRMLAPRALVHPVCPSFATDHRQREGTFYEFCTYYL
                     KPSNVEEFLYNFKKNVHLRTAHSELVGYWSVGFGGRINTVFHIWKYDSYAQRAAVYKA
                     LAKDNDWQERFLIPNLPFIDKQESEITYLVPWCKLGTPPKEGVYELATFLMKPGGPAL
                     WGDAFERAVNAHANQGYVKLIGVFHSEYGLLNRVHVLWWVEDADRRAAGRHQAHEDPK
                     VVSAVRESVNYLDTQQNMFLIPWSFSPLK"
     exon            222..432
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            433..591
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            592..741
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            742..828
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1052
                     /gene="Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catacaggtc ggtcctctgc tacctggaga agggcggacc cgctcctacg aaccccaccc
       61 agtccagctc ggaccaaacc aagcaggaac aggcaccaga aagctgggac agcgcctgtc
      121 caagcaccca acgtgtcttc ctgagcgctc caggctgcgc catgctcgcc ctccaaagca
      181 gcctgaggag gatgctggcc ccgcgggctc tggtgcatcc ggtgtgccca tcatttgcta
      241 ctgaccacag acagcgagaa ggaacattct atgagttttg tacttactat ctcaaaccct
      301 caaatgtgga agagttcctg tacaatttta agaaaaatgt tcatcttcgg acagctcact
      361 ctgaattggt cggatattgg agtgtaggat ttggaggcag aataaacaca gtattccata
      421 tttggaagta tgatagttat gctcagcgtg ctgcggttta caaagccttg gccaaggata
      481 atgattggca agaacgattc ctcattccaa atttgccttt catcgataaa caagagagcg
      541 agattaccta tttggtacca tggtgcaaat tagggacgcc tcccaaggaa ggagtctatg
      601 aactggctac ttttctgatg aaacctggtg gcccagctct atggggtgac gcatttgaaa
      661 gggcagtaaa tgcccatgct aatcaaggct acgttaaact aattggcgtg ttccattcag
      721 agtatggatt gctcaacaga gttcatgttc tgtggtgggt cgaggatgca gatcgtcggg
      781 cagctgggag gcatcaagcg catgaagatc ccaaagtcgt gtctgctgtt cgggaaagtg
      841 tcaactacct agatactcaa cagaatatgt tcctgattcc ttggtcattt tcaccactga
      901 aatagtttcc tactgactgt tttgctagct aagtgagatg tttcagtggc cagtgcttca
      961 attctctcta gagaattact tcaactttta tttgaaggaa gtggtaagtt aatttactgt
     1021 gcatttttaa agaccattaa aggccctttt at
//
