LOCUS       NM_001100730            1909 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus nipsnap homolog 1 (Nipsnap1), mRNA.
ACCESSION   NM_001100730 XM_001067526 XM_341249
VERSION     NM_001100730.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Okuda-Ashitaka E, Minami T, Tsubouchi S, Kiyonari H, Iwamatsu A,
            Noda T, Handa H and Ito S.
  TITLE     Identification of NIPSNAP1 as a nocistatin-interacting protein
            involving pain transmission
  JOURNAL   J Biol Chem 287 (13), 10403-10413 (2012)
   PUBMED   22311985
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Nautiyal M, Sweatt AJ, MacKenzie JA, Mark Payne R, Szucs S, Matalon
            R, Wallin R and Hutson SM.
  TITLE     Neuronal localization of the mitochondrial protein NIPSNAP1 in rat
            nervous system
  JOURNAL   Eur J Neurosci 32 (4), 560-569 (2010)
   PUBMED   20646061
  REMARK    GeneRIF: Data provide the first experimental evidence for a
            strictly neuronal expression of NIPSNAP1 in the rat nervous system.
REFERENCE   3  (bases 1 to 1909)
  AUTHORS   Tummala H, Li X and Homayouni R.
  TITLE     Interaction of a novel mitochondrial protein,
            4-nitrophenylphosphatase domain and non-neuronal SNAP25-like
            protein homolog 1 (NIPSNAP1), with the amyloid precursor protein
            family
  JOURNAL   Eur J Neurosci 31 (11), 1926-1934 (2010)
   PUBMED   20497468
REFERENCE   4  (bases 1 to 1909)
  AUTHORS   Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl
            E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES and
            Mann M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   5  (bases 1 to 1909)
  AUTHORS   Da Cruz S, Xenarios I, Langridge J, Vilbois F, Parone PA and
            Martinou JC.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AI111951.1 and BC089879.1.
            
            On or before Oct 26, 2008 this sequence version replaced
            XM_341249.2, XM_001067526.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089879.1, EV776712.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                AI111951.1         435-452             c
            19-1909             BC089879.1         1-1891
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..1909
                     /gene="Nipsnap1"
                     /note="nipsnap homolog 1"
                     /db_xref="GeneID:360971"
                     /db_xref="RGD:1310419"
     exon            1..114
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..871
                     /gene="Nipsnap1"
                     /note="4-nitrophenylphosphatase domain and non-neuronal
                     SNAP25-like protein homolog 1"
                     /codon_start=1
                     /product="protein NipSnap homolog 1"
                     /protein_id="NP_001094200.1"
                     /db_xref="GeneID:360971"
                     /db_xref="RGD:1310419"
                     /translation="MAPRLCIISAAARRLLRKPGPCVGDLAAARAVRFYSKDSEGSWF
                     RSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPECLDAYNSLTEAVLPKLHLDE
                     DYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKTNKEYLEFRKERSKMLL
                     SRRNQLLLEFSFWNEPQPRAGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAV
                     GGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMI
                     PLKISPLQ"
     exon            115..242
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            243..288
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            289..383
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            384..454
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            455..595
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            596..627
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            628..722
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            723..806
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
     exon            807..1887
                     /gene="Nipsnap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctgctccgg tccaacatgg ctccgcggtt gtgcatcatc tctgcagcag cacggcggct
       61 gctaaggaag ccgggaccct gtgttgggga cctcgcggct gcgcgtgctg tgcgattcta
      121 ttccaaggac agtgaaggca gctggttccg ctccctcttt gttcacaagg tggatcctcg
      181 gaaggacgcc cactccactc tgctgtccaa gaaggagact agtaatctct acaagatcca
      241 gtttcacaac gtgaagcccg aatgtctgga tgcctacaac agtctgacgg aggctgtgct
      301 gcccaagctg cacctggatg aggactaccc ctgctcgctt gtgggcaact ggaacacgtg
      361 gtacggggag caggaccagg cagtacacct atggcggttc tcaggtggct atccggccct
      421 catggactgc atgaacaagc taaaaaccaa caaggagtac ctagagttcc ggaaggagcg
      481 gagcaagatg ctgctgtcca ggagaaacca gttgcttctg gaattcagct tctggaatga
      541 gccacagccc cgagctggcc ccaacatcta tgagctgaga acatacaagc tcaagccggg
      601 aaccatgatc gagtggggaa acaactgggc tcgggccatc aagtaccgtc aggagaacca
      661 ggaggcggtg ggaggcttct tttcacaaat aggagagctc tacgtggtac accacttatg
      721 ggcctacaaa gatctgcagt ctcgggagga gactcgaaat gcggcctgga gaaagagggg
      781 ctgggatgaa aatgtgtact atacagtccc tttggttcga cacatggagt cacgaatcat
      841 gatccccctg aagatttctc ctctccagtg aggctggcac tgcctccacc tccttccctt
      901 tctcctttgg agtaacctgg aacagaagag cttctgggcc ggctggcaga gtttttctct
      961 caactctgga agacttctga tgggtggtgt ttggcttaga aaaagatgac gttttttgag
     1021 aacttagtct gtctatcccc atccaacctc tctcccatgc tggatgaagt ttttaatgcc
     1081 cctaactgca gaatagcaac ctttccagca ttcacacatt ttcctcttaa gattcgttat
     1141 gtccaggaca gcacgtcccc agctaacact gtggccatgg ctagctgtta ggaggtgtgg
     1201 tgtgaaagga tatcagacta ggtatggccc aggaactctc tggtatctta tttgttaaaa
     1261 aatcagcaag cctgagcctt taaaaaaaaa aaacaagcaa acaaacaaca acaacaacaa
     1321 taacaaaaac ccctggaact gccataaact ctgaagtcat cgaagtcagg aggagatcca
     1381 gaatcctact taaagggctg ggaaaaggat aggaatggga agggtttggg tacatgagac
     1441 aggcttgacg caggaatcct tcagaagtgg gcacatagga ttcagaattt gaaacgcaga
     1501 attaggaagc tagcacagag tgacagagga tcttaaggga ggaccctgtt cctagacagg
     1561 tggagaggct tagccgtgtt ttccacacag cgcggttaga acttgcatat gccccagctc
     1621 ttctgcacat cttccttcct acaggcaaaa atacaggctg agacctagag tcccatcttg
     1681 aattctttct ttcccaactt gacatcctgt cagccaaacc ttcattttgc agaaccagta
     1741 ggcctgtgga gtgggttcag tgattctggg gtctcttcaa tgacccctcc catacctcat
     1801 gaaccccctg cttagcatgg ttttgctacc ataccaggag aatgtactgg aatagttgat
     1861 ggaaccaaat taaatattta ctgtaaaaaa aaaaaaaaaa aaaaaaaaa
//
