LOCUS       XM_006239277            5614 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NIPA-like domain containing 3
            (Nipal3), transcript variant X2, mRNA.
ACCESSION   XM_006239277
VERSION     XM_006239277.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239277.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239277.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5614
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5614
                     /gene="Nipal3"
                     /note="NIPA-like domain containing 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 11 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 83 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:502990"
                     /db_xref="RGD:1563439"
     CDS             672..1904
                     /gene="Nipal3"
                     /codon_start=1
                     /product="NIPA-like protein 3 isoform X1"
                     /protein_id="XP_006239339.1"
                     /db_xref="GeneID:502990"
                     /db_xref="RGD:1563439"
                     /translation="MDGAHSAGLQLQPLSPTSGATSPSLSSGEGSFSYKENLIGALLA
                     IFGHLVVSIALNLQKYCHIRLAGSKDPRAYFKTKTWWLGLLLLLLGELGVFASYAFAP
                     LSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVGCGLAIVGTYLLVTFAP
                     NSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKEKNANSIVVILLLVALLGS
                     MTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAIYQATFLSQASQIYDSSLI
                     ASVGYILSTTVAITAGSIFYLDFLGEEALHICMFALGCLIAFLGVFLITRNRKKAIPF
                     EPYISMDAMPGMQDMHAKGMTVQPDLKASFSYGALENNDSISEIYTPATLPVMQEEHS
                     SRSTPGVPYRVLEHTKKE"
ORIGIN      
        1 gagcgccctg gaagctccac gcgcaggttc atggtcacag cggaacccct gggaaacagc
       61 agcgggggac tagggtgatt gacagcctcg cggggctgct gagccgcggg cgtgctggga
      121 gattaaggac gcaatacagc caacaggtgg gacgcaggcg caggaaagaa ggggtacgca
      181 cggtccccga gacacgtcag ggctctgctg ggtttcgata ttgaagctac ctgatagaag
      241 catcaggggc accgcccggg acagtcggtg acagttaacg cagcctgcgg gggacaccag
      301 gcgggctgtt caagtccagc ctacctgtct ggcaggtgga ggtgagcagc cataacctgg
      361 ggaccaaagc agcctggact ccttcctttg gccgctagag gggactcctc cagagcttgg
      421 cgggagtcag aagacacacc ctcccctgtc tgctcgggag agacacacga gctgcttcct
      481 gaggagagga gaggagagga gacggctata aatcaaccaa aagagaccag agaactcatc
      541 tggctgagga agggaacgag gtggctgttg gaaggaggtg aacaccagga gacatggcct
      601 ccagttcaca ccctgcctag cagcagctcc tcctcccagc ctggcccgac aggatgtccc
      661 gctagacagc catggacgga gcccacagcg caggcctgca gctgcagcct ctctcaccca
      721 ccagcggagc cacctccccg agcctgagca gcggtgaggg ctccttctcc tacaaggaaa
      781 acttgatcgg cgcgctcttg gccattttcg ggcaccttgt ggtcagcatc gcccttaacc
      841 tgcagaaata ctgccacatc cgcctggcag gctccaagga cccccgggcc tacttcaaga
      901 ccaagacatg gtggctgggg ctgctcctgc tgctgctggg ggaactgggc gtgttcgcct
      961 cctacgcctt cgctccactg tcactcatcg tgcccctcag tgccgtctcc gtgatagcaa
     1021 gcgccatcat cggaatcata ttcatcaagg aaaaatggaa acctaaggac tttgtgaggc
     1081 gctacgtctt atcctttgtt ggctgtggtc tggcgatcgt gggcacctac ctgctagtga
     1141 cgtttgcacc caatagtcat gagaagatga cgggcgagaa catcgccagg caccttgtga
     1201 gctggccttt tctcctgtac atgctggtgg ccatcgtcct gttctgcctg ctgctgtact
     1261 tctacaagga gaagaatgcc aacagcatcg tggtgattct cctcctggtg gccctgcttg
     1321 gttccatgac ggtggtgaca gtcaaggctg tggcggggat gctggtgctg tctatccaag
     1381 gcaacctgca gctggactac cccatcttct acgtgatgtt cgtgtgcatg gtggccaccg
     1441 ccatctatca ggccacgttt ctgagtcaag cctctcagat ctacgactcc tccttgatcg
     1501 ccagtgtagg ctacatccta tccaccacgg tggccatcac agcaggttcg atcttctacc
     1561 tggacttcct cggggaggag gctctgcaca tctgcatgtt tgcactgggg tgcctcatcg
     1621 ccttcctggg cgtgttccta atcactcgga acaggaagaa ggccattccc tttgagcctt
     1681 atatttccat ggacgccatg ccaggtatgc aggacatgca cgcgaaaggg atgaccgtcc
     1741 agcctgacct caaagcttct ttttcctacg gagccttgga aaacaatgac agcatttccg
     1801 agatctacac cccggccaca ctgcccgtca tgcaggagga gcacagctcc agaagcaccc
     1861 ctggggttcc ctaccgcgtc ctggagcaca ccaagaagga atgatctgcc tccctcgggg
     1921 ggtgtaactg cccatagacc acccatcctt ccactcttcg ttgttcaaac tgcctttcaa
     1981 gtatcctggt ttgaaacgga gaactctgtg caagatgacc ttgggagacc cccgtttctg
     2041 gcagagaagc cattcaatga tcttggcctt ggaaatttca aatagtggcg gaagtatccc
     2101 aggtgggctg tgtggccggc taaggcagtg ggatttggag ccattttacc tgcttgggca
     2161 gtcagtgggt tatcaggtaa tggtcacaag cttccacaca ctccttgaag tgaaagcaag
     2221 acactgctcc ctctttgcaa accgagcaaa aggctggagg acttccacag tcggtcttcc
     2281 cctacccggc acgcatgtct cagctcgacc cgttcactca caattctata gctctgagaa
     2341 tattgctgtc cctctgccag gctcagcagg gccaaccctg cgtggaacaa actgtcgttt
     2401 gcacctggct ggggtacatg ggccttccat cacctgagcc cttctgtgaa gacccggcag
     2461 cgtctgctgg ctccattcca atccttggag attttttttt ccattgcttc ctccctctaa
     2521 agaaatcaag aggacagagg tggaggagga caggcacaag ggcgggggac gtgggggaga
     2581 gctaacttca gccctctctg tttccaactg gtaagaaaag ttcctgtgac tctcttgtcc
     2641 agccctagag gatgtgtgga aactctctgt aggacaagct actctggctc ctgcacatcc
     2701 ggctcctgag aagagtccag agcctcctgc aggtccactt cagcctcccc ctccccctct
     2761 ccctcctcct cttctccctc cccctcccct tcccccctcc tcctcctcct ctcctaacct
     2821 tccactagct aagcctcaac tgccggttca cagcccagtt caggcagagc agagcaggca
     2881 ttttcacaca caggtctgca gcttccttcc tgggtagcct ccccctcttc ctccccgact
     2941 tcccagccaa tgtacaaagg cttgcaggct ttgacaggca ttagaattcc agaggagttt
     3001 gtttaaaatg taagttccta gctccaactg tagtgacctg gatccgtggg cctggaaggg
     3061 gacccaacag cctgcatcct cacaggagat ctgagcccca gagagcttac cccctcagaa
     3121 gccttctctt atgggccact aactcccaaa ggaccacaca gccctgccag aaggtttaaa
     3181 cctccagttc ctggccctct cagggccctg tagacaagct tgatggcccc gtcggactgt
     3241 ggcagtcctt ccacagtgaa caccactcaa aagtggcagt gttaataggt cagtgttgat
     3301 atgccgtcct cggcacggtt cttcacgccc aaacagtgct ctgacttcag aactctgcca
     3361 tctgctacag agcctaccac cacttctgta tttcgtcttg accatgtctg tattgtagct
     3421 ctcatgcctg aggttgaaat ggacagagga agggctcttc aactccctcc aacagcagta
     3481 ggccctggta attttcttag gttctgggag ccattttatc ctatatctcg ccccagaaag
     3541 ctataagcat tacacatagt tctgccctcc aggactgcaa ggggacacac ccatgccagg
     3601 aacggtgggc agggcaggct gtgtggccga gaggcagagt cacagaggct tgccagataa
     3661 ggccataggt gttcaggtta gagacaattt ctgtgcttca tgctggaaat agagctaaga
     3721 ttaaagaggg ggtgatcgca ccaccaccac caccaactcc cccctccccc cgctgccacc
     3781 gcaaggaaat gggcagctct ggaaaagtca gagcttggag ccaggattgc caaagagccc
     3841 aggagagtga taagaaatga gcattgaaag acaagcaatg gacgtcaagc acagtggctc
     3901 gcaccgtgac ccctgctctt gggtgacatg ttttttcttt tatttttttc tttacatttc
     3961 aaatgttatc ccctttcccc gtctcctgtc cataagcccc ctatcccatc tccttccccc
     4021 ttctatgagg gtgttcaccc acccacccac cccttcccag gtgacattct tttcttcagg
     4081 aggattgcga caaattctag gctaacccag accaccaagc gagaccccat ctcaaaacaa
     4141 gattagcagc gaagataatc atgaaagagg caagattagc tggcagaggc atgggagggc
     4201 gtgggagcta ctgaagagac atgaggaaga gcgaaaccag gtcagcgcct attggaaagg
     4261 agaccccatc tgtggcagga gagaaaatgg agcaacgcgt cacctttcag ggtcaggctc
     4321 caggcccctg aaaacaaaga cttaaagctt ctgttctggt agctggaagg aattgggaag
     4381 cgggccgtgt atgcaaagaa gtgagcaggg aggttgtttc cgtgtggcaa cccgggtggg
     4441 cagccatcgt tttagcatgg tatgtatgcc cagcctcatt ccccctttcc ctcttcctcc
     4501 catgggctgt ttagccctgg ccagcctgag agacaggtgc actgtaactg catgtgatgc
     4561 agaaggcatg ggagcgccac ccaggaacag cttcctgggg cctgggaagc tcgatggctt
     4621 tcaggctggg gagtagccac catcatacaa gcagagccat gaggggtgag cagaaaggcc
     4681 tttgagctcc tgagtggaga tggggcagtg ggagaccaga gttcccagtc tgtcctagac
     4741 gccctgcttt gccccgggtg tcactggatt gtccgctcac agcagggctg ccctgttgtt
     4801 agaatgagga agggagagac caactgtcta cccacaaccc cgtttcccct cgtggctctg
     4861 acatcaccca cccaccccca tccttcccac ccacaccctg aagacaggca ttcagtctgt
     4921 agcccaggct ggtcttgaaa tctcaatcct cctgcctcag cctctggaat gctgggatta
     4981 tgggtgtgga ctactgtgtc cggctcccat ctgaactccc ctggccacac taaatgccac
     5041 acggcctctc tcccagccac aaggcacctc caacagggtc atcaaccatg agttaaactt
     5101 catttattcg cttgtcttcc tcccgacccc cacactccga atctctgttc cgtgggttgg
     5161 gttccaggtt ccagatcaga cattagaaca gatgttcttg tgaactgctg ctttcagagg
     5221 gggaggcctg accccacacg gtggccagat ggcaccttca ctttcagcac tagggtttgg
     5281 agttcagcgt ggacctgagt accagtgggg aggggaactt gggacccctc ccctttgcct
     5341 ttccagtggg cctagccagc ttgaggtggc catcgaagaa ggactgggcc ctgcacaccc
     5401 tgcagtctca ctgatttcaa atgtgaccca actctaactg acactgaaac caccatgtaa
     5461 atgaagtcac tctagagcat agtctatgta gacgcttata ttttgttaac gtcacaacta
     5521 atagagcatg tgttattttg caaaagtgtg tatactgtgt gcagataaca ttgcgaagcg
     5581 gtatttaatt aaaaatccaa gtggtacttg taga
//
