LOCUS       XM_039079513            1995 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NIPA-like domain containing 2
            (Nipal2), transcript variant X2, mRNA.
ACCESSION   XM_039079513
VERSION     XM_039079513.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079513.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1995
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /note="NIPA-like domain containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 24 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:362899"
                     /db_xref="RGD:1564315"
     CDS             843..1448
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /codon_start=1
                     /product="NIPA-like protein 2 isoform X2"
                     /protein_id="XP_038935441.1"
                     /db_xref="GeneID:362899"
                     /db_xref="RGD:1564315"
                     /translation="MEGQILEILVFCILLYFHKRKGKKHIVILLTLVALLASLTVISV
                     KAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMTTVVPVNHV
                     FFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREREYLQQSFIDF
                     GNIPGKQMLDKIQPDSNGLSYGSLPDGGDSTRGQRAEKKEA"
ORIGIN      
        1 acacataaca catgcacaca cacatgagtg cacacacaaa cacacatgta tgtatacgcc
       61 acacacaaag aagaaatgga ctcagactca aattagtgaa attcacctgt ttagactacc
      121 attgactcct ttagcaccga aatgggacaa ctagtaccat aaaattctaa ttagattcaa
      181 gaagcagtcg agaaacccct gagtgcttgg tgtggtgcac acctttaatc ccagcactgt
      241 ggaggcagtg gcaggtgggt ctctgggcta caaaatgagt tgtaggccag gctaaccatg
      301 gttgtctcaa aaaacagaga gggggaagga gaagagagag gacagagaat gagagggaag
      361 aaaagaaaaa gaagtgaaac aaaattccaa aaccaattca gataatttat ctcaaagatg
      421 atttcttgga aaggacttca agaattaaaa cctgaatcac ttttctatga tttccaccac
      481 attacttgcc caggcctcca gaaaggaacc tgtcatttcc cagctcctgc aggtcttcag
      541 cagtgctcgg cacaggcttg cccagccttt ctgatacagt ggcttctgtt tgcagggctt
      601 ctgcttgaag catccagggt cacctcagac ttcaggcccc tagccttagc ctcagctgta
      661 aaaccccagt ggcatatgcc ataatgtaaa caaacattct ggggatttag aacctgggcc
      721 tcaggctggg cagcgttatt ctgcatgcca aaggtggtat ctttaacatg tcctacatgt
      781 atgacaagcc tcagtttctt cacccatgaa atgaagataa tcacagtacc tgcctcctga
      841 gcatggaagg acagattcta gaaatcctag ttttctgcat ccttctgtat ttccataaga
      901 gaaaaggaaa gaagcatatc gtgatcctgc tcaccctggt ggcactcctc gcctcattga
      961 ctgtgatttc tgtgaaagct gtctcaggca tgatcactct ttccgtgacg ggtaaaatgc
     1021 agctaactta tgccatcttc tacatcatgc ttgtcatcat gatagcctct tgtgttttcc
     1081 aagtcaagtt cctgaatcaa gccacagagc tctacacaat gaccacagtg gtgccagtca
     1141 accatgtttt ctttacaacc agcgctatca tcgcgggcat catattttac caggaattcc
     1201 ttggtgctgc ttttctcact gtatttatat atctttttgg gtgctttctg tcattccttg
     1261 gagtattttt agtgacaaga aatagagaaa gggaatatct acaacaatct tttattgatt
     1321 tcgggaatat tcctgggaaa caaatgttgg acaaaataca accagattca aatggcttat
     1381 cctatggaag cttgcctgat ggaggcgact caacaagggg ccagcgtgca gagaagaaag
     1441 aagcctaggt tgccgagagg ggtggcggtt ggcccgctat gcagtaccac cttttaaagg
     1501 attgcacatg ttcgctccgt aattgtcagc agctatttca cgctgacatg tgtgcgcatt
     1561 cgattcagtt ctccccccac tgtggacaat caggaccttc ctaatctctc acaggctaat
     1621 gctttcatgg aatgtaactc cgagtgcccc acaccctgca cctctcccta gcgagcatct
     1681 cgctggctgc atcctaatga gagcctggct gccggagcac gactgtcaca caaaaatgtg
     1741 cactcgagat ttggccatag aagacagagg ttgcttctcc atgtggcttg cagaatctgc
     1801 ttgttggccc caaaaacacc ctctcatgct acaaccttag tctttaaagg aagatttgac
     1861 gagctcgttc tcgggtgcct tctatgaacc tctcaaggaa tccactccct tttccctgtt
     1921 gtgtgccaag ccaccgtctc agccaattct gttaaaatct tcctttggaa ataaagggcc
     1981 tccttacaaa attga
//
