LOCUS       NM_001130559            2200 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus NIPA-like domain containing 2 (Nipal2), mRNA.
ACCESSION   NM_001130559 XM_001058806 XM_343227
VERSION     NM_001130559.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 28, 2008 this sequence version replaced
            XM_001058806.1, XM_343227.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..2200
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /note="NIPA-like domain containing 2"
                     /db_xref="GeneID:362899"
                     /db_xref="RGD:1564315"
     exon            1..633
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     CDS             499..1650
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /codon_start=1
                     /product="NIPA-like protein 2"
                     /protein_id="NP_001124031.1"
                     /db_xref="GeneID:362899"
                     /db_xref="RGD:1564315"
                     /translation="MASPAPTGPQDDASAVLDELSRNFTYWAPGPSNGSLSSAWYHRN
                     QIHLFGVLLAILGNLVISISLNIQKYSHLHLAQKEHPKPYFKSVLWLSGVLLMAIGET
                     GNFAAYGVAPITLIAPLGCVSVTGSAVISVIFLKENLRASDLLGMTLAFAGTYLLVNF
                     APNITQAISARTIQYYFVGWQFLVYMILEILVFCILLYFHKRKGKKHIVILLTLVALL
                     ASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMT
                     TVVPVNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREREY
                     LQQSFIDFGNIPGKQMLDKIQPDSNGLSYGSLPDGGDSTRGQRAEKKEA"
     exon            634..702
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            703..874
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            875..934
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1056
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1153
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1289
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1290..1378
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1442
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1443..1537
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..2200
                     /gene="Nipal2"
                     /gene_synonym="Npal2; RGD1564315"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgacaact tttcagcaat tctttgtgaa cctatctgac agcccatcca gctgccatag
       61 gatagccctt ctctagtcta cgaatagttc ctaatgatca ttctgtggct aggctcttag
      121 ttcccacact gtgcacaata ttggggagag ggagattatg actttttctt ttttccatat
      181 gtagaccatt ttaactttta cacacgagaa ctggaattaa ccaatagctc cttttccccc
      241 tgcacttgga caaacgttta ctatgtgccg ggtagatccc agaggcaaag gagatgatgt
      301 cattcctgcg ctgacaggtg aaggcaccgt ggcccaggag ggagcggcgg cagctaggcc
      361 cagccgaccg cagctgcgtg ccgcaggaac caggtgctgg cgccgggtcg ccgggcagga
      421 agtggctgcc gctgccagag gacagcccgg cgggcgggga aggccgcgcc cgagtcccag
      481 ctcgcggagc aactcttcat ggcgtcgccg gcgcccacgg gcccgcagga cgatgcctcg
      541 gccgtccttg acgagctgtc tcgcaacttc acatactggg cgccaggccc gagcaacggc
      601 tcgctgtcga gcgcctggta tcacagaaac cagattcacc tttttggagt tctgctggcc
      661 attttaggaa acctggttat cagcatttcc ctaaatatcc agaaatattc tcatcttcat
      721 ttggcccaga aagagcaccc aaagccatac tttaagagtg tgctttggct gagtggagtc
      781 ctgctgatgg ccataggaga gactggcaat ttcgcagcct atggggttgc ccccatcact
      841 ctgatcgcac cactgggctg cgtgtcagtt acaggtagtg ccgtgatttc tgtcatattt
      901 ctaaaagaaa acttaagagc ctcggattta ctgggtatga cactagcatt tgcaggaaca
      961 tatttattgg tgaattttgc tccaaacatc acccaggcta tctcagcaag aacaatacag
     1021 tattactttg ttggctggca gttcctggtc tatatgattc tagaaatcct agttttctgc
     1081 atccttctgt atttccataa gagaaaagga aagaagcata tcgtgatcct gctcaccctg
     1141 gtggcactcc tcgcctcatt gactgtgatt tctgtgaaag ctgtctcagg catgatcact
     1201 ctttccgtga cgggtaaaat gcagctaact tatgccatct tctacatcat gcttgtcatc
     1261 atgatagcct cttgtgtttt ccaagtcaag ttcctgaatc aagccacaga gctctacaca
     1321 atgaccacag tggtgccagt caaccatgtt ttctttacaa ccagcgctat catcgcgggc
     1381 atcatatttt accaggaatt ccttggtgct gcttttctca ctgtatttat atatcttttt
     1441 gggtgctttc tgtcattcct tggagtattt ttagtgacaa gaaatagaga aagggaatat
     1501 ctacaacaat cttttattga tttcgggaat attcctggga aacaaatgtt ggacaaaata
     1561 caaccagatt caaatggctt atcctatgga agcttgcctg atggaggcga ctcaacaagg
     1621 ggccagcgtg cagagaagaa agaagcctag gttgccgaga ggggtggcgg ttggcccgct
     1681 atgcagtacc accttttaaa ggattgcaca tgttcgctcc gtaattgtca gcagctattt
     1741 cacgctgaca tgtgtgcgca ttcgattcag ttctcccccc actgtggaca atcaggacct
     1801 tcctaatctc tcacaggcta atgctttcat ggaatgtaac tccgagtgcc ccacaccctg
     1861 cacctctccc tagcgagcat ctcgctggct gcatcctaat gagagcctgg ctgccggagc
     1921 acgactgtca cacaaaaatg tgcactcgag atttggccat agaagacaga ggttgcttct
     1981 ccatgtggct tgcagaatct gcttgttggc cccaaaaaca ccctctcatg ctacaacctt
     2041 agtctttaaa ggaagatttg acgagctcgt tctcgggtgc cttctatgaa cctctcaagg
     2101 aatccactcc cttttccctg ttgtgtgcca agccaccgtc tcagccaatt ctgttaaaat
     2161 cttcctttgg aaataaaggg cctccttaca aaattgagtt
//
