LOCUS       NM_138847               1178 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus nucleolar pre-rRNA processing protein NIP7
            (Nip7), mRNA.
ACCESSION   NM_138847
VERSION     NM_138847.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Nov 27, 2020 this sequence version replaced NM_138847.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF158186.1, BC059114.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000019.1  51872306-51872449
            145-231             JAXUCZ010000019.1  51872555-51872641
            232-370             JAXUCZ010000019.1  51872740-51872878
            371-511             JAXUCZ010000019.1  51873466-51873606
            512-1178            JAXUCZ010000019.1  51873782-51874448
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1178
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /note="nucleolar pre-rRNA processing protein NIP7"
                     /db_xref="GeneID:192180"
                     /db_xref="RGD:620069"
     exon            1..144
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..631
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /note="kDa93; Saccharomyces cerevisiae Nip7p homolog;
                     nuclear import 7 homolog; NIP7, nucleolar pre-rRNA
                     processing protein"
                     /codon_start=1
                     /product="60S ribosome subunit biogenesis protein NIP7
                     homolog"
                     /protein_id="NP_620202.1"
                     /db_xref="GeneID:192180"
                     /db_xref="RGD:620069"
                     /translation="MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRV
                     YYVSEMILKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPG
                     AEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMA
                     IVVFHQADIGEYIRHEETLT"
     exon            145..231
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            232..370
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            371..511
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            512..1178
                     /gene="Nip7"
                     /gene_synonym="CGI-37; Nip7p; pEachy"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttggtgta cccaggaagt agagataaag tgacttccac ttccggctct ccaggcacga
       61 ggatccggag agccaagcta gtgggaaaat gaggcctttg actgaagaag agacccgcgt
      121 aatgtttgag aagattgcga aatacattgg agagaatcta caactcctgg tggacagacc
      181 ggacggcacc tactgtttcc ggctgcacaa cgaccgagtg tactatgtga gtgagatgat
      241 cctgaagctg gccgccaaca tctccggaga taagctagtg tccctgggta cgtgttttgg
      301 aaagtttacc aagacccaca agttccggtt gcacgttaca gctctggatt tccttgcacc
      361 ctacgccaag tataaagtgt ggataaagcc tggagctgag cagtccttct tgtatggaaa
      421 ccatgtgttg aaatccggtc tgggtcggat cactgaaaac acgtctcagt accagggagt
      481 agtggtttat tccatggcag acgttccttt gggttttggg gtggcagcaa agtctaccca
      541 agactgcagg aaagtggacc ccatggcaat tgtggtgttc catcaagcag acattgggga
      601 gtacatacgc catgaagaga cgttaactta agatggccat cccaagaaca ttttgctgtg
      661 tgagaggact tagctttgtt tcctgtgtgc cggccatcat gttaaatctg gataacactg
      721 agatatgcag cttggattct tatcaacaga aatggctcaa aaatagggtt tctggccctc
      781 tagagccaaa tgcaggtgga tcacaaggat aaggccagct caggctactt ggcaagttca
      841 aggctagcct gggctaccta gtgaggcttg tctcagaaat ctaaaacaga caaatcagaa
      901 cctatgagca tttgtgtgag caaattgagt gtttctattt tatgtctgca tcatcgttga
      961 ttcagaagcc ttgttctgag tgacggtttc taagttactt caccgaggac agggataatc
     1021 ttactgttat ctgtgataac tcttttccag gcttataaca gcacagtgga ctttctaatg
     1081 tttgttaata ttaaagttag aaacagctat ataaggacag taggccatgc ctatggtttt
     1141 atatatggag tttaataaat tgtaatggtt ttattttc
//
