LOCUS       XM_006244960            1806 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NGG1 interacting factor 3 like 1
            (Nif3l1), transcript variant X2, mRNA.
ACCESSION   XM_006244960
VERSION     XM_006244960.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244960.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244960.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1806
                     /gene="Nif3l1"
                     /note="NGG1 interacting factor 3 like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, 5 Proteins, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 189 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:301431"
                     /db_xref="RGD:1310329"
     CDS             244..1404
                     /gene="Nif3l1"
                     /codon_start=1
                     /product="NIF3-like protein 1 isoform X1"
                     /protein_id="XP_006245022.1"
                     /db_xref="GeneID:301431"
                     /db_xref="RGD:1310329"
                     /translation="MVGNLLPGFRMLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLS
                     SLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYH
                     PPIFRPMKHITWKTWKERLVIRALENRVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTR
                     PIHPSKAPNYPTEGTHRLEFSANHSQDLDKVMSAVKGVGGVSVTSFPARCDGEEQTRV
                     SLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMIE
                     RIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVL
                     DAASKGINVILCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLRVV"
ORIGIN      
        1 cacttccgcc catcttcttc ctacattgcc aggagcttca gggcagagcg gaagtgacac
       61 accaaaagag tttctgcgac tcgtgggttg tggaggagag aaaagctcgc ggggctgtct
      121 gttcttcacg ctggaggctg gccttgaact gacagcatag ctgacactgc ccttgcacct
      181 cgtcctctac tggatcacag acaagtgcca gtttctgtgg tgctggggac taaacccttg
      241 tgcatggtag gcaaccttct acctggtttc cgtatgctgt catctgcaca cgtggtccct
      301 acaagtgtgc gacgtgcccc atcgtggatc tgcagctctt cccgttcctt catggatctg
      361 aaggctcttc tctcttcctt gaatgacttt gcctccctct catttgctga gagctgggac
      421 aatgtggggt tgctggtgga gccaagcccg ccccatactg taaatacact cttcctgacc
      481 aatgacctga cggaggaggt catggaggag gctctgcaaa agaaggcaga tctcattctc
      541 tcctaccatc cacctatctt ccggcccatg aagcacataa cttggaagac ctggaaggag
      601 cgccttgtga tccgggctct ggagaacaga gtcgccatct actctcccca cacggcctat
      661 gacgccgcac cccagggagt caacagctgg ttggccaaag ggctcggaac ttgcactacc
      721 aggcccatcc acccttccaa agctccgaac taccccacag agggaactca ccgactagaa
      781 ttcagtgcga accacagcca agacctggac aaagtcatgt ctgctgtgaa aggggttgga
      841 ggtgtctctg tcacctcttt tcctgccagg tgtgatggtg aggagcaaac acgggtcagt
      901 ctgaattgta ctcagaaggc tttgatgcag gtgctagctt ttctctccca ggacagacaa
      961 ctttatcaga aaactgaaat tctttctttg gagaagcctt tgcttctgca tactggaatg
     1021 ggacgcttgt gcacactgga tgagtctgtc tccctggcaa caatgataga acgaatcaaa
     1081 agacacctaa agctgcctca tcttcgctta gctcttggag tggggaggac cttagagtct
     1141 ccagtcaaag ttgtggccct gtgtgctggt tctgggggca gcgttctaca aggagtagag
     1201 gccgaccttt acctcacagg tgaaatgtcc caccatgatg ttctggatgc tgcttccaaa
     1261 gggataaatg tcatcctttg tgaacacagc aacaccgaaa gaggcttcct ttctgatctt
     1321 caagaaatgc tgggtgttca cttggagaat aagattaata ttatcctgtc tgagacagac
     1381 agggaccctc tccgtgtcgt ttagaaggca aggacattat gacagaagcc tggactgaac
     1441 aggactgtgc aggagttggt acaccaccct tctgcagaac tgtaatgaac ttctcatttc
     1501 agtttgctaa tctggctcaa caaatgtcat agctcagacg gtaaaactgt aaagagtaca
     1561 ttaaagacaa atcttggggc tggagagata gctcagtggt taagagcact gactgctctt
     1621 ccagaggtcc tgagttcaag tcccagcaat cacatggtgg ctcacagcca tctgtaatga
     1681 gatctgatgc cctcttctgg tgagtctgaa gacagctaca gtgtgcttat atatatatat
     1741 atatatatat atatatatat atatatatat atatatatat gaaatgaaat aaataagtaa
     1801 atcttt
//
